LOC110486603 (LOC106606941)


Basic Information

Item Value
gene id LOC110486603
gene name LOC106606941
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 47833234 ~ 47836337 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558333.2
TGGACTCAGGTGCGTAATTTCCGGTTCTAACAGCCAGAAATAACTGTGTTCGCCGGCAGGTCCAGGGTCAGCTTTAAAGGTTGATATTACGAGCTACTCGGTCAATGAGCATCGTTGTAAAATGTATCCAAGATCAGGAATTTGAatgcgtttttactttcatgatTCACGTTGTGTAAAATTCTGCCACCACTTCCGCATTGAGATCTTGACAAACTAGCTTATCATGGCAGTGGGCCTAATATCGTATCAGACGTTGAGTTGTCGATTGTTAAACCGTATGATTTCGCACCAAAGCGTGAGCACAATCTGCAACTTTACACGCGCTTTATCGAGAAGGACTAGCTCTCCGTACACAGATCTCTCACCACGGACAGTCCACCGTCTGGCAAATCTATGCGGGAGTTGGACGTGCCGGACATCACAGTGGTTGTCTTTTTACGACTCAAGATCGTTCTCGTCTTTACCTCCACCGCCCCCTTCTGGTGAtaaaaccaaaaagacaggaCCAGTGACTTGGAAATCATTAGCAATAACATTTGCATTCGGGGGTGTTCTCCTTGCTGGAATGAAATATTTCAAGAAGGAAAAAGAAGAATTGATTGAAAGAGAAAGGACAAAGTCAATGGGGAAACCAGCACTTGGGGGTCCATTCTCTCTTGTGGATCAGAATAATAAACCCTGTAAAAGTGAGGATTTCCTCAGCCAGTGGGTCCTTATCTACTTTGGGTTTACACACTGCCCTGACATCTGTCCTGATGAAATCGAGAAAATGATTGAGGTGGTCGATGAAATAGACAGGATACAGTCTCTTCCAAACCTGACCCCCATCCTCATCACCATTGATCCTGACAGGGACACACCTGAGGCCATGGGGACATATGTGAAAGAGTTCTCCCCTAAGCTCATTGGCCTGACTGGGACAATGACCCAAATTGACCAGGTCTCTCGAGCCTACAGAGTCTACTACAGCCAGGGACCAAAGGATGAAGACAACGACTACATTGTTGATCACACAATCATCATGTACCTGGTTGGTCCGGACGGAGAGTTCAAAGAGTATTTTGGACAGAACAAGAGGAGCGCTGAGATCTCCTCTTCCATTGCATCACACATGAGGAAGTACAAGAAGGGGAATTAAGAGGTGAGATGAAGGAGAACTGGTCAAGTgcactgtctgtgtctgggaaCACCTCTTGTGTGCCTCTCTCAGCCTTCAGAGACAGTCAGCAGCCTCAGGCCCAGCAGCCTCAGGCCCAGCAGCCTCTGGCCCAGCAGCCTCTGGCCCAGCAGGACTGAACGCTGCCATATTATGTCAATGACATGGAATATTTATTTGCATTACAGCTTTTCATTGAATTCAGATGTCTACGACTTACCATTTCCTTGTTGCGGTTCACCATTTAACATGGTCTCTAATATCATGTTTAAGTCTAAGATGATTTAAAGTGATTCTTTGCAAATGGGTGTGGACAACACTTAAGTGTTTATTTTTTCTGCTTTGCCCATTATTTAAATCGATATGAAATACAATTGTTTCGATGTAAAATGAGCCAACCAGAAATACTTGATTTTAAGTACCTAAAATGTAACTACCATAAAATGTAGGGGGGAAATATTCCCTGGAAATCAATACTGAAGAACTATAGGTTTCCAGTGTTTGCCCTTGGACACTCCTAatggaaaaaaaacatgaatagtTGTCGTTGTGCAGTTAGAGTTCGGCTTTACTTCCTTTACACTAATTCTTCTGTTAAGTCTGGCCCAATACCTGGACTTGTTTCAGTGACACCAGAAACATTTATGCACTGTAATAACTCTTTGGTTACTCGATTTGTACTATTCATAAATCAGTCATATTTCAACTGAATTTCCAAAGTAATGTTTAATTTATTAAACTTGAACTTACAattatgtatgtctgtctgatttttttgtttttgttttactgCCCATGTAGTCGTAGGCTACCATGCAGGTTATCAGGGCTTCACTTTGTACAACCATATTGTAGACTAGCCTGTTCCTAGTGGCAAACACGTGCCGGTCAGAGTTTGTTGTTCATAGGAGGTGTCAAGAGTAGAGTACCGTCCGAGATAATTAATTTAACAGCTTGACTTGTAATCATGTTGCTATTGATATGACCGCCAGGACAGTGTCTTGACTGGGCCCATTGTTCTGCAAATAAATGGTAAT

Function

NR:

description
PREDICTED: protein SCO1 homolog, mitochondrial-like isoform X1

GO: NA

KEGG:

id description
K07152 SCO1; protein SCO1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558333.2 True 2196 mRNA 0.43 7 47833234 47836337
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110486605 tmem220 coding upstream 303 47830848 ~ 47832931 (+)
LOC110486595 paqrb coding upstream 327245 47482238 ~ 47505989 (+)
tmem100a LOC106606948 coding upstream 362029 47468012 ~ 47471205 (+)
LOC110486592 LOC106606958 coding upstream 422912 47403774 ~ 47410322 (+)
LOC110486591 LOC106606947 coding upstream 432474 47395330 ~ 47400760 (+)
LOC110485199 NA coding downstream 11075 47847412 ~ 47858242 (+)
LOC110486607 LOC106601502 coding downstream 39069 47875406 ~ 47912448 (+)
LOC110486609 LOC106601450 coding downstream 90710 47927047 ~ 47932749 (+)
LOC110486612 LOC106601453 coding downstream 116611 47952948 ~ 47960452 (+)
LOC110486615 NA coding downstream 125677 47962014 ~ 47984490 (+)
G1181941 NA non-coding upstream 100847 47732130 ~ 47732387 (+)
G1181927 NA non-coding upstream 108061 47724824 ~ 47725173 (+)
G1181774 NA non-coding upstream 130067 47601655 ~ 47703167 (+)
G1181660 NA non-coding upstream 234998 47598070 ~ 47598236 (+)
G1182094 LOC106601460 non-coding downstream 163261 47999598 ~ 48003504 (+)
G1182107 NA non-coding downstream 188847 48025184 ~ 48025774 (+)
G1182110 NA non-coding downstream 195841 48032178 ~ 48032404 (+)
LOC110486620 LOC106601507 non-coding downstream 256671 48093008 ~ 48102030 (+)
G1182130 NA non-coding downstream 271439 48107776 ~ 48108141 (+)
G1181955 NA other upstream 90170 47742361 ~ 47743064 (+)
G1181636 NA other upstream 283686 47549279 ~ 47549548 (+)
G1181472 NA other upstream 458757 47374163 ~ 47374477 (+)
LOC110485193 LOC106601421 other upstream 1496956 46302751 ~ 46336386 (+)
G1182153 NA other downstream 283276 48119613 ~ 48122575 (+)
G1182354 LOC106601550 other downstream 719677 48556014 ~ 48561624 (+)
G1182541 NA other downstream 1110412 48946749 ~ 48947969 (+)
G1182555 NA other downstream 1141663 48978000 ~ 48981403 (+)
G1182595 NA other downstream 1227448 49063785 ~ 49065142 (+)

Expression

LOC110486603(LOC106606941) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
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LOC110486603(LOC106606941) Expression in each Bioproject

Bar chart with 21 bars.
LOC110486603(LOC106606941) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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Co-expression Network