LOC110485199


Basic Information

Item Value
gene id LOC110485199
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 47847412 ~ 47858242 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110485199
ATGAGCTCGGACGTGGAGATGGCCGCTTTTGGAGCAGCCGCCATCTCTTTCCGCAAGCCTGAGAGGGGGAGGGTTGAGGCTCAGACCTGGCCCGTTGATGCCAAGAACGCCTGCTTCGTGCCAGGTGTCAAGGATCTGTCCATCAAAGGAGTCGTCCAGAACAGACAAGGTTGCAAAGTCACCGTGAAATGTGGGAATGGAGAGACGGTAACCATGAAAGAAGAGGACGTTTATCAGATGGATCCTCCAAAGTATGATAAGATGGAGGACATGGCCATGATGACCTACCTCAATGAGCCCTCTGTGCTGCATAACCTCAAATATTGTTATTCAGCATTGATGATCTATACCTACTCCGGGCTGTTCTGTGCTACTGTGAACCCCCCTACAAGTGGCTCCCAGTGTACGACCAATCGGTGGTGACAGCCTACAGAGGCAAAAAGCGTATGGCGGCCCCACCAAATATCTTCTCTGTTTCCGATAATGCATATCAAAATATGCTTACAGATAGTGAGTGTCAGTCTGTCCTGATTACTGGAGAATCTGGTGCAGGAAAGACTGTCAAAACAAAACGTGTTATCCAGTATTCTGCGACAATCACAGTGGCTGGAGGTACTGAAAAGAAGGAGCAAACTGGCAAGATACAGGACACGCTGGAAGATTAAATCAGTTCAGACAACCCTCTGCTGGAGGCCTTTGGAAATGCCAAGACAGTGAGGAATGACAACTCCTCTCATGTTGGTAAATTCATCAGAATTCACTTCGGAACCACAGGAAAACTGGCTTCTGCTGATTttgatacatATTTATTGGAAAAGTCCAGAGTGACATTCCAACTGTTAGAGGAAAGGAGCTACCATATCTACTATCAGATCATGACAAATCACAAACCAGCACTTATAGAAATGCTTCTAATCACGACAAACCCGTAGGATTTCACAATGATCAGTCAGGGTCAGATCACTGTGGCCAGCATTGACGACAAAGAAGAGCTGGTGGCCACAGATGATGCCATTGGTATCTTGGGCTTCAACCATGATGAGAAGTTGGCCATCTACAAGCTGACTGGTGCTGTGATGCATTATGGGAACTTGAAGTTCAGGCAGAAGCAGCGTGAGGAACAGGCAGAGCCTGACTGCACCGAGGTAAGATATCTTATGGCAGACAACGTCTCTTTTCTCTTGGGCCTGAACTCTGCTGAATTAGTGAAAGCCCTCTGCTACCCCAGAGTGAAGGTCGGGAATGAGTTTGTCACCAAGGGGCAGACAGTTCAACAGATAGTCAATTCAGTTGACACCCTGGCATAGAAGATGTTCTTATGGATGGTCATCAGAATAAACAAGATGCTCGATATGAAGCAGGCAAGACAATTCTATATAGGAGTGTTGAAAATCGCTGGATTTGAAATCTTTGATTacaacagcttggagcagcccTGTATTAACTTCACTAATGAGAAACTGCAACAGTTTTTTAACCACACCATGTTTGTGCTGGAACAAGAGGAATACAAGAAGGAAGGAATAGACTAGGAGTTCATTGACTTTGGTATGGACTTGGCTGCCCGTATTGAGCTTAGTCAGAAGCCATTGGGCATCTTCTCCACCCTTGAAGAGGAGTGCATGTTCCCCAAGTCTTCAGACACTACCTTCAAGAACAAACTCTACGACCAGGATCTTAGAAAGAACCAAGCTTTCCAAAAGCCAAAGATTGTCAAAGGCAAACCTGAGGCCCACTTCACCGTAGTGCACTATGCTGGTAATGTGGACTACAGTCTCACTGGCTGGCTGGACAAGAACAAGGACCCGCTCAAcgcaatttcattgaaatgacatggaaataaAATAACATTGATAACaatcagtgtATACTGGTGGCGGCGAGAAAAAGAAAGGGGGAAGAAGCAGAAAGGTGGCTCTTTCCAGACGGTCTCTGCTGTTTTCAGGGAAAATCTTGACAAGTTAACGACCAACTTGAGGAccgtttcccctcatgtctttgtcagagatttagaaaaaaataaaacaaaaagtcCAGGTATTATGGATAATCATCTGGTTATTCATCAGCTGCGCTGTAACTGTGTGCTGGAGGGTATCAGGATCTGTGTCAATGGGTTCCCAAGCAGGATAATACATGCTGACTTTAAGCAGAGATACAGAATATTGAATGCCAGTGCTATCCCAGAAGGACAGTTCATCGATGGCAAGAAAGCTTCAGAGAAGCTTCTTGGATCAATTGATCCTGATCACACACAACATAAATTTGGACATACCAAGGTCTTTTTTAAAGCCGGTCTGCTGGGCACTCTTGAGGAGCTACGAGATGAAAAACTGGCCTCTCTGGTGACAGGCACTCAAGCACTGTGCCGTGGGTGCCTCATGAGAAAATAATTTTCTCAGCTGGCTATAAAGAAAGATTGTGTGTTCATTCTGCAATACAACCACCGCTTATTCATGAACGTGAAACACTAGCCTTGGATGAAGCTGTACTTCAAGATCAAGCCCCTTCTGAAGAGTGCAGATAGTGAAAAGGAGGTGGAGAAGATGAAGGAGGACTTCATCACATGTAAGGAGGACCTGGCAAAGGCAGTGGCCAAGAGAAAGGAACTGGAGGAGAAGATGTTTCTCTTGTTCCATTAGAAAGACAATCGGTTTTCCTGGGATTCAGAAACTCTTTTGGATGCAGAGGAGAGATGTGAGGCTTTCATTAAAAGCAAAATACAGCTTGAAGCCAAACTGAAAGAGTTGACCGAGAGACTGGATGATGAAGACAAAATCAATTCTGAGCTGACTGCCAATAAGAGGAAGCTGGAGGATGagtgctctgagctgaagaaagaTATTGATAACTTAGAGCTCACCTTGGCCAAAGTGGAGAAGGAGAAGCATGCCACTGAAAACAAGGTTAAAAACCTAACAGAGGAGATGTTTGGTCAGGATGAGAGACATTCCAAGTTGACCAAGGAAAAGAAAGGCCTCCAAGAGGCACATCAGCAGACCCTTGATGATCTCCAGGCAGAGGAGGACAGTCAACACTGACAAAAGCAAAAGCTATGCTTGAACAACAAGTGGATGATCTTGAGGGTTCTCTGGAGCAAGAGAAGACGATTCGCATAGACCTTGAGAGAGCCAAGAGAAAGCTTGAGTGTGATGTGAAACTGACACATGAAGCCATAATGGATCTGGAGAATGAAAAGCAGCAGTCAGATGAAAAACTCAAGAAACTTGAAACAGCCCAGCTGCAAAGCAAAATTGAGGATGAACTAATACTGAGCTCCCAGCTTCAAAAGAAGATTAAGGAACACAATACTCGTATTGAGGAACTCGAATAAGAAATTGAAGCTGAGCGCTCTGCTTGTGTCCAGATAGAGAGGCAGAGGTCTGATCTCTCAGGGAACTTGAGGAGATCAGTGAGAGGCTTGAAGAGGCTGGTGGAGCCACTGCTTCTCAAATTGAGAGGAACAAGAAGTGTGAGGCTGAGTTTCAGAAGCTGCGTCGAGGCCTGGAGGAGTCCACCTTGCATTACGAGTCCATCGCTGCCACTCTTCTcaagaagcagacagacagacagtatggcAGAACTGGGAGAACAAATTGACAACCTCCAGATAGTTAAGCAGAaactggagaaggagaagagtgAATACAAGATGGAAATAAATGACTCGGCCAGCAACATGGAAGCTGTGGCCAAATCCAAGGTTAACCTTGAAAAAATGTGCCTCTCTCTTGAGGGTAAGCTAATCGAGTTAAAGACCAAGACAGAGGAGAATGTACGTCATCTCAATGATATCAGTAATCAAAAGGCCCGTCTCCAAACTGAGAATGGGGAATGTAATCAGACAATGGAGGAGAAGGAAGGTCTCATTTCACAACTGACAAGAGCCAAGCATGGGttcacaacacAAATTGATGACCTGAAGAGACATTTTGATGAGGTAATGAAAGCTAAGAATGCCCTGGCCCATAGTTTACAATCAGCACGTCACGACTGCGACCTCCTCCGAGAACAATTTGAGGAAGAACAGTAGTCCAAGGCTGAGCTGCAGCGTAGCATGTCCAAGGCCAACAGTGAGGTAGCTCTGTGGAGAACCAAGTATGAGACTGATGCCATCCAgcacactgaggaacttgaagagGCCAAGAAAAATCTTGCCCAACGTCCCCAAGAGGCTGAGGAACAAATTGAGGCGGTGAACACAAAATGTGCTTCACTGGAAAAGACTACGCAGAGACTGCAGAATGAAATGGAGGATCTCATGGTTGATGTGGGGAGATCAAATTGTATGGCTGCTAAACTTGATAAGAAACAGAGAAACTTTGACAAGATTCTAGTTGACTGGAAGCTGAAGTATGAGGAGTCACAGTCGGAGCTGGAAAGTGCTCAGAAAGAATCTCGATCACAAACCACAGATCTTTTCAAAATTAAAAGCTCATTTGAAGAAGCTCTAGATCATCTGGAAACTCTCAAAAGGGAGAATAAAAACCTACAACAGGAGATATCAGACCTGTCGGAGCAAATTGGTGAGAGTGGAAAGAGTGTCCATGAACTGGAGAAAGTCAGAAAACAAGTGGAAACAGAGAAGAGTGAGATGCAATCTGCACTAATTTACTTTGTATCGGACTTGTTCCTGTTGTCATAGA

Function

NR:

description
myosin heavy chain, fast skeletal muscle-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110485199 True 4646 mRNA 0.45 35 47847412 47858242

Neighbor

gene id symbol gene type direction distance location
LOC110486603 LOC106606941 coding upstream 11075 47833234 ~ 47836337 (+)
LOC110486605 tmem220 coding upstream 14481 47830848 ~ 47832931 (+)
LOC110486595 paqrb coding upstream 341423 47482238 ~ 47505989 (+)
tmem100a LOC106606948 coding upstream 376207 47468012 ~ 47471205 (+)
LOC110486592 LOC106606958 coding upstream 437090 47403774 ~ 47410322 (+)
LOC110486607 LOC106601502 coding downstream 17164 47875406 ~ 47912448 (+)
LOC110486609 LOC106601450 coding downstream 68805 47927047 ~ 47932749 (+)
LOC110486612 LOC106601453 coding downstream 94706 47952948 ~ 47960452 (+)
LOC110486615 NA coding downstream 103772 47962014 ~ 47984490 (+)
LOC110486616 LOC106601459 coding downstream 126547 47984789 ~ 47992007 (+)
G1181941 NA non-coding upstream 115025 47732130 ~ 47732387 (+)
G1181927 NA non-coding upstream 122239 47724824 ~ 47725173 (+)
G1181774 NA non-coding upstream 144245 47601655 ~ 47703167 (+)
G1181660 NA non-coding upstream 249176 47598070 ~ 47598236 (+)
G1182094 LOC106601460 non-coding downstream 141356 47999598 ~ 48003504 (+)
G1182107 NA non-coding downstream 166942 48025184 ~ 48025774 (+)
G1182110 NA non-coding downstream 173936 48032178 ~ 48032404 (+)
LOC110486620 LOC106601507 non-coding downstream 234766 48093008 ~ 48102030 (+)
G1182130 NA non-coding downstream 249534 48107776 ~ 48108141 (+)
G1181955 NA other upstream 104348 47742361 ~ 47743064 (+)
G1181636 NA other upstream 297864 47549279 ~ 47549548 (+)
G1181472 NA other upstream 472935 47374163 ~ 47374477 (+)
LOC110485193 LOC106601421 other upstream 1511134 46302751 ~ 46336386 (+)
G1182153 NA other downstream 261371 48119613 ~ 48122575 (+)
G1182354 LOC106601550 other downstream 697772 48556014 ~ 48561624 (+)
G1182541 NA other downstream 1088507 48946749 ~ 48947969 (+)
G1182555 NA other downstream 1119758 48978000 ~ 48981403 (+)
G1182595 NA other downstream 1205543 49063785 ~ 49065142 (+)

Expression


Co-expression Network