LOC110486606 (LOC105899468)


Basic Information

Item Value
gene id LOC110486606
gene name LOC105899468
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 47860198 ~ 47871854 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110486606
ATGAGCAGGGATGGAGAAATGTCTATCTTCGGGCCAGCTTCCCAGTACCTGAGGAAGTCAGAGAAGGAGAGGATTGAGGCTCAGTCTACGCCCTTTGATGCCAAAACAGCCTGTTCCGTCAGTGATGACAAAGAGCTCTATGTGAAGGGGTTCGTCCAGAACAAAGACGGAGACAAAGTCACCGTCCAGACCCTGGATGACAGAACTGTAACAGTCAAGGAGGACCAAGTCTCTCCAATGAACCCGCCCGGGTTCGATAAAATGGAGGACATGGTTAGGATGACCCACCTCAATGAGCCCTCTAGCCCTCTAGCACAGAGTTATACAGCACGTATAACCTCAAAGAGCGTTAAGCAGCATGGATGATCTATACctactctggtctgttctgtgtGACTGTGAACCCCTATAAGTGGCTCCCAGTCTATAACCCAGAGGTGGTGAGTGCCtacagagggaagaagaggataGAGGTCCCACCTCACATTTTCGCCCTCTCTGATAATGCCTATCAGCTCATGCTAACAGATCGGGAACATCAGTCTATCCTAATCACTGGAGAATCCGGTGCAGGCAAGACTGTAAACACCAAACGTGTCATCCAGTACTTTGCGACAATCGCAGTGTCTGCAGACCAGAAAAAAGAACCAGTCAGCAAGATGAAGGTAAGTTTATACCTTTTGATCATCCAGGCCAACCCTCTGCTGGAGGCTTTTGGGAATGCCTAGACGGTGAGGAATGACAGCTCCTCTCGCTTTGGCAAATTCATTAGAATACACTTTAGTACAACGGGTAAACTGGCCTCAGCAGATATTGAAGTTTATCTGCTGGAAAAACCTTGAGGGACATTTCAATTGGGTGCTGAGAGGAGCTACCATATATTCTACCAGCTAACTTGCAACAAGAAGCCAGAGCTTATTGATATGCTTCTCATCACCCCCAACTCCTATGACTTTGCCTTTATAAGTCAAGGAGAAATCACTGTGAAGAGCATAGCCGATGCAGATTAATTGATAGCTACTGATGAAGCTATTGATATCCTGGGTTTTATTGCTGATGAAAAAGTGGGCCTCTACAAGCTGACTGGAGCCATAATGCATCATGGGAACATGAAGTTCAAGCAGAAGCAGCGTGAGGAACAGGCAGAAACTGATGGCACCGAGGCAGCTGATAAAGCAGCATACCTGATGGGCTTGAACTCTGCTGACCTGCTCAAAAATCTCTGTTATCCCAGAGTAAAGGTTGGGAATGAGTATGCCACTAAAGGACAAAGCGTTCAGCAAGATATGTTCTATACATTATAAGTGTATAACTCCATTGGAGCCCCTGCCAAATCAGTCTATGAGAAAATGTTCTGTTGGATGGTCTTAAGGATCAACCAACAACTGGATACAAAGCAGTCCAGACAACATTTCATTGGTGTTCTGgatattgctggatttgagatcTTTGAATACAACACACTGGAACAGCTCTGCATCAACTTCACTAATGAGAAACTGCAACAATCACCACATGTTTGTGTTGGAACAAGAGGAATACAAGGAGGAAGGAATAGACTGGGAGTTCATTGACTTTAGTATGGACTTGGCTGCCCGTATTGAGCTTAGTGAGAAGCCAATGGGCATCTTCTCCATCCTTGAAGAGGATGTTCCCTAAGTCAACAGACCCTTCTTTCAAGAACAAACTATGACCAGCATCTTGGAAAGAACCAAGCTTTCCAAAAGCCAAAGATCCCTGGTGCACTATGCTGGTACTGTGGACTACAGTATCACTGGCTGGCTAGAGGAGAACAAGGACCCGTTGAATGAGTGTGTTCTGCAGCTGTACCAGAAGTCATCTGTCAAAATACTTACTGATAATTATTTCAACATGGTTTCTTCAGAGCCTGCAGCAGGTGGTGCTAAGTTGCTAAGAAGAAGGGAGCATCGTTCCAAACAGTTTCCGCTCTGTTCAGAGAAAACCTTGGCAAGCTCATGACAAACTTGAGAACAACCCATCCTCACTTTGTGCAGTGTTTGATTCCAAATGAGACCAAAACACCAGGTGCAATGGAAAACCAATTGGTTATCCACCAGCTGCGCTACAATGGTGTGTTGGGGTGTATCAGAATCTGCAGGAAGGGATTCCCAAGCAGAATCATTTATGGGGACTTCAAGCAGAGgtACAGGATCCTGAATGCAAGTGCTATCCCAGAGGGACAGTTCATGGATAACAAGAAGGCTGCGGAGAAACTGCACTTTTCAAGGTGCACTTTTCACATTGCATACAACATTCACACTGTAATAGTGTTTTTTAAAGCTGGTCTCCTAGGTGCTCTGGAGGGGGTGAGAGATGAGCGCCTAGCCCATGTGACATCCACTCAGGCACTGTGTCGAGGATATGTTGTCAGACTGGAGTACCAGAAGATGATGGCCAGAAGGTAGTCCATTTACACCATACAATATCATTTCTGCTCATTCATGAACGTGAAACACTGGCTATATAAACACTGGCTGAAACTATATTTCAACCTCAAGCCTCTTCTGAAGAGTGCAGAATTGGAAAAAGAGATGGCCCAAATAAAGGTGGACTTCACTAAGAGCAACGAGGAACTGGCCACATCAGAAAGCAGGAGAAAGTAGCTTGAGGAGAAGATGGTCTCTATTGTCCAAGAGAATAATGACCTTCACCTTCAAGTTCAGGGTGAATCCGATCATCTGCTGGATGCTGAAGAGAGATGTGAGGGCCTAATCAAAAGCAAGATCCAGATGGAACACAAACTTAAGGAGGTAACAGactagaggatgaggaggatgggaATGCTGAGCTGACTGCAAAGAAGAGGAAGCTGGAGGATGAGTGCTCTGAGCTCAAGATAGACATGGATGACTTAGAACTCACCTTAGCCAAAGTGGAGAAGGAGAAACATGCCATAGAGAACAAGGCAATCCACCTACTCCCATTAGGTGAGAATGTCGTTAAACTGACCAAAGAGAAGAAAACCCTCCAAGAGGCCCACCAACAAACACTAGATGACACTCTGAACACTCTGAACAAAGCCAAATCCAAGCTGGAACAGCAAGTTGATGATCTTGAAGGTTCCCTGGAACAAGAGAAGAAGGTTCATATGGACCTCGAGAGAGCCAAGAGAAAGCTGGAGGGTGACCTGAAGCTGTCCCAGGAGACCTTAATGGACCTGGAGAATGAGAAGCAGCAGCTGAATGAGAAGCTCAAGATGAAATACTTTGAGGTGTCACAGCTGCTGGGTAAGGTTGAGGAGGAACAGTCTATTTCTGCACAACTTCAGAAGAAAATCAAAGAGCTTCAGGGTCGTGTTGAGGAACTTGAGGAGGAAACTGAGGCTGATCGTGCTATTCGGGCCAAGCTAGAGAGGCTGACCTCTCCAGGCAACTTGAGGAGATCAGTGAAAGACTTGAGGAGGCTGGTGGAGCCACTGCTACTCAGGTtgagattaacaagaagtgtgaGGCTGAGTTTCAGAAGCTGCGTCGAGACCTGGAGGAGTCGTCTCTACAGCATCACGCTACCTCTTCTACTCTGCATAAAAAAACATGCCGACAGTGTGGCAGAACTGGGAGAGCAGATTGACAACCTCCAGACAATTAAGCAGAATCTGGAAAAAGAGAAAAGTGAGCTAAAACTGGAGGTGGATGACCTGTCAAGAAACATGGAGGCTATTGCTAAAGCAAAGATCAATTTGGAAAAACTGTGCCGTTCTCTTGAAGATCATCTGAGTGAAGTGAATACTAAAGAGGAAGAGCATCAAAAATTAATCAATGATCTTTCAAGCCAGAAGGCTCAACTCCAGACACAAAATGGGGAGATGTCACGACTGCTTGAGGAGAAGGATTCCTTAATGTCACACCTAACTTGTGGCAAACAAGCCTATGTCCAACAAATTGAAGAGCTGAAAAGGCAGAATGAGGAGGATGTTAAGCCCATGACATTTGCTTTCCATATTAGGCTAAGAAAGTCCTGGCCCATGTTCCGGGAGCAGTATGAGGAGGAGCAGGAGTCCAAGGCTGAGCTGCAGCGTAGCATGTCCAAGGCCAACAGTGAGGTAGCTCTGTGGAGAACCAAGTATGAGACTGATGCCATCCAGtgcactgaggaacttgaagagGCCAAGAAAAAGCTATCCCTATGTcttcaggaagcagaggaagcTGTTGAGGCAACCAACTCCAAGTGCTCCTCATTGGAGAAGACCAAGCAGAGGCTGCAAGGGGAGGTGGAGTATCTGATGATGGACGTTGAGAAAGCCAACTCTGCTGCTGTCTCTTTGGACAAGAAGCAAAGAAATGTTGATAAGATCTTGTCAGAGTGGAAGCAGAAATTTGAGGAGTGtcaggcagagctggaggcatcGTTGAAAGAGGTTCGCTCTATGGGCACTGAGAACTTCAAAAGGAAGAATGGCTATGAAGAAACTCTTGAACATCTCGAAACACTCAAACGCGAAAACAAAAACCTGCAACaGGAAATTATGGATCTTACTGAACAGCTAGGGGAAACAGGAAAAACCATTAATGAAAAgagaagacagagaagacaACAGGAGAAGACAGAGGTTCAGACTGCCCTGGAGGAGGCAGAGGCATCTCTGGAGCAAAAGGAATCTAAGCTCCTCTGTGTACAGCTGGAGTTGAACCAGGTGAAGTCTGAAGTGGACAGAAATATTTCTGAAAAGGATGAGGAGATTGACCAGctgaagagaaacagacagagagttaTTGATTCCATGCAAACCAATCTGAACTCTGAGGTCAGGAGCAGGAATGATACCCTGCGAGTtaagaagaagatggagggagacctCAATGAGATGGAGATTCAGCTGAGCCATGCTAATAGACAGGCCAGTGAGTCACAGAAACAGCTGAGATATATACAAGTTCAGCTCAAGGAAGCACAACTCTACATTGATGATGATATTAGAGGACAGGAGGATATGAAGGAGCAGGTTGCCATGTCTGAGCGCAGGAGCAACCTGTTGCAGGATGAAATTGAAGAGATGAGGGGTACTCTGGAGTATACTGAGAGAAGACGTAAAACAGCTGAGCAAGAACTAGTGGGTGCTAGTGAGAGACTGCAGCTATTGCACTCACAGGTACACCTGATCAACAGTTTCAAGAAACTTGAGACTGATCTCACCTCAATTCAGGGTGAGATGGAAGACAGTATTCAGGAGGCCAGAAATGCTGAGAAGGCCAAAAAGGCTATCACTGATGCTGTCATGATGGCagaggagctgaagaaggagcaggACACAAGTGGTCACCtggagaggatgaagaagaatcTGGAGATCACCTTCAAGGACCTGCAGCAGCGTCTGGATGAGGCAGAGAATATTGCCATGAACGGTGGAAAGAAGCAACTCCAGAAACTGGAGACAAGGGTGAGAGAGCTGGAGAATGAGCTAGAGTCAGAGCAGAAACACATCTCAGATGCTGTCAATGGCATATGCAAGTATTAGCACAGAATCAAGGAGCTCACCTATCAGGTAAATGTCAGCTGGATGGATACACTGCATGCAAAACTTCACCATTGATTTCCTCATCACCACAGTTCTTTGGTGCGTTCTAAgaactattttttttaaacaatctgAGGAAGATAAAAATAACATCATTAGACTTCAAGAACTGGTGGACAAGTTACAGCTGAAGGTTAAAGCCTACaagagacaggtggaggaggctGTGAGTACAACTCAATCCAGACCAGTTTACAGATGGTTTGGAACCTCCCTTAAAAATGTTGATACTTGATCCAATTAAATTTTATAGGAGGAGCAAGCCAATTCCCACCTGACCAAGTTCAGGAAGGTGCAGCATGAGTTGGAGGAGGCTGAAGAGCGTGCTGACATTGCTGAGACCCAGGTCAAAAGATGCAGGTCAAGAGTCATGACATGGGCAAGGAAAAAGTCAGTGAAGAGTAGCAGATGGCTGGCATTCTGAAGAAAACGTGGGCAATGCCTGCAACATTAATAAGCAACATCCTCTTAACCAACTTCCAAATACCTCGTTTGTTTAGTCTAATAGATATTGATGAGAACTGTAAGAAAATGGTCAAGAGGTGAAATGTAGAAGTTGTAGATGTATTATTTTTGGTTTGCAGTAGTGGATGTATGTTGCCCTATAATAATAAACTTTCAACATGATTTGTGTTTATTGATTCATTGTCTGGATACACAAAGGTTAGCTAATGCTATTTGACAAAATCAGTAGTAAAGAAAATTACAAAATAATAGCCTAGTATTTATTACTGCTTTATCCCATTTTGAATGGCG

Function

NR:

description
myosin-1B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110486606 True 6298 mRNA 0.45 38 47860198 47871854

Neighbor

gene id symbol gene type direction distance location
LOC110486602 map2k4 coding downstream 29421 47817718 ~ 47830777 (-)
LOC110486601 rnz2 coding downstream 45134 47806224 ~ 47815064 (-)
LOC110486600 LOC106606953 coding downstream 152647 47638574 ~ 47707551 (-)
LOC110487550 LOC106601487 coding downstream 245826 47612281 ~ 47614372 (-)
LOC110486599 NA coding downstream 248704 47607673 ~ 47611494 (-)
LOC110486610 reco coding upstream 47710 47919564 ~ 47921770 (-)
LOC110486608 LOC106601451 coding upstream 61187 47933041 ~ 47934339 (-)
LOC110486611 LOC106601455 coding upstream 73507 47945361 ~ 47948136 (-)
LOC110486613 LOC106601452 coding upstream 76470 47948324 ~ 47954054 (-)
LOC110486618 LOC106606909 coding upstream 127727 47999581 ~ 48015951 (-)
G1181978 NA non-coding downstream 102551 47757427 ~ 47757647 (-)
G1181977 NA non-coding downstream 103331 47756640 ~ 47756867 (-)
G1181974 NA non-coding downstream 105663 47754242 ~ 47754535 (-)
G1181958 NA non-coding downstream 114850 47745005 ~ 47745348 (-)
G1181931 NA non-coding downstream 134609 47725297 ~ 47725589 (-)
G1182954 NA non-coding upstream 18739 47890593 ~ 47890800 (-)
G1182992 NA non-coding upstream 90073 47961927 ~ 47962271 (-)
G1182993 NA non-coding upstream 90438 47962292 ~ 47962810 (-)
G1182996 NA non-coding upstream 96342 47968196 ~ 47969726 (-)
G1182997 NA non-coding upstream 97955 47969809 ~ 47970255 (-)
LOC110486594 LOC106601485 other downstream 393512 47460436 ~ 47466735 (-)
LOC110486593 LOC106606954 other downstream 426801 47432406 ~ 47433949 (-)
LOC110486590 LOC105022923 other downstream 945180 46827752 ~ 46915018 (-)
LOC110486586 ubald2 other downstream 1324553 46510585 ~ 46535713 (-)
G1179621 LOC106607015 other downstream 2327536 45531858 ~ 45532662 (-)
G1183013 NA other upstream 153247 48025101 ~ 48025776 (-)
G1183126 NA other upstream 387670 48259524 ~ 48259989 (-)
G1183190 NA other upstream 489744 48361598 ~ 48365100 (-)
G1183192 NA other upstream 492202 48364056 ~ 48376966 (-)

Expression


Co-expression Network