LOC110486609 (LOC106601450)


Basic Information

Item Value
gene id LOC110486609
gene name LOC106601450
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 47927047 ~ 47932749 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558340.2
AAGGAAGAGAACGAATCCTTCAATAAAGGTATCAGGCAGCACATCCTTAGAGCCACAGGAGAGATGTACATACAGCATCACTCAAGGAACCTCAAATGCCACAAGATTATGAAGATTTGAGATATATTTGAGAGGCAAAACACGGCGGCGACATATCGAAAGCCTGGATTAGTTGCCATTTCATTTCATTTTGCCCAGCCTCCAGCATGGGGACAGAGTGCAGTCGGCGGGGGTCCCTGGCGCTCACCCTCAACATTGTAGCATTTACGTGTGCCCTGTCAGCAGTGACCACTAGCTTCTGGTGTGAGGGGACCAGGAAGGTGGTCAAGCCTTTCTGCACGGGGCCGGTGACGACCAGGCAGTCGTACTGCATTCGCTTCAACAGCAGTAACATCAATGACAGCCGGCTGGTGCAGTACATCTGGGAGTCGGGAGAAGAGAAGTTCCTGATGAGGAAGTTCCACACCGGCATCTTCTTCTCCTGTGAGCAGGCTGCTGACATGAATGGTTTTAACTGCAGAGACTTTAAAGACATTGCACCTGACCATGAAAAAGGGGTCCTGTGGCTGTGCATCACAGCTGAGTGTCTCTACCTCATCCTGCTGTTCACGGGTGGTGTACTCATGTGGTTAGAGCTGTGTCCTTGCCTCAGCGTCATGAACAAGCTGAAGCTCAACGCCTTTGCTGCAATGTTCACCGCCCTGTCAGGCCTTTTGGGGATGGTTGCCCACATGATGTTCACCACGGCCTTTCAGCTGGCTGTGGCTATGGGTCCGGAGGACTGGAGGCCCAAGACCTGGGACTACAGCTGGTCCTACATCTTAGCATGGGGCTCCTTCGCCACCTGCATGGCTTCTGCGGTGACAGCACTGAACAGGTACACCAAGACCATCGTAGAGTTCAAGTACAAGCGGCGGAACATTGAGAAGAACCTGAGGATCAAGCAGAAGCTGCTGGAGATGGACCTGCCAGAGCAGATGTGGGACATGTACCTGACGGCTGTGCCTGCAAGGGGAGAAGGAAATGCTGGGCCTCTGGACCTCCCTGTCAATGGGCAAAAACCCTCCACTGGAGCAGCCTATGTAATGGGCCTGGACAGCATGACAGAACCACAGGGAGAGGCCTACTGCTAagacagtggtcaccaaccctggGCCTGCAGGGCCCCATTccaatactgttagaatgtaccttCCATCCTCCCTTCATTGAGGTTATGACTGCTCCAACATGATTGGATAGGTTCCAATTCAAAACACAAAGGGGAGGAAGAAAGGATGCATTTTCACAGTATCAGAACAGGGCCTACGAGATCTATAAGGCTTTACAGGACCAGGCTTGGTGACCTCTTCATTAAAATGACCATAAATTGGCTCTCATATACAGGATCCCAAACTCACTGGACTATATAGGGTATAATGGATCCCGTTGAGGAGATCATTACTAATAATATGGCCAAAGGAACATGGAGCTGACTGAATAAACAACACTTGTCCTCAACTTTCTCCTGTATGTTTCTAGAGCCAAGGCCATGACGATTATTATCATTACTGTTATTCTGGAGCAGATGGTAAAGCTGTTTTTATAAGCTATGTTAGTAGTTTTGTTGCCACATTCGGCATGGGGCTGCAAATATCAGCCAAGTC

Function

NR:

description
germ cell-specific gene 1-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558340.2 True 1646 mRNA 0.50 5 47927047 47932749
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110486607 LOC106601502 coding upstream 14599 47875406 ~ 47912448 (+)
LOC110485199 NA coding upstream 68805 47847412 ~ 47858242 (+)
LOC110486603 LOC106606941 coding upstream 90710 47833234 ~ 47836337 (+)
LOC110486605 tmem220 coding upstream 94116 47830848 ~ 47832931 (+)
LOC110486595 paqrb coding upstream 421058 47482238 ~ 47505989 (+)
LOC110486612 LOC106601453 coding downstream 20199 47952948 ~ 47960452 (+)
LOC110486615 NA coding downstream 29265 47962014 ~ 47984490 (+)
LOC110486616 LOC106601459 coding downstream 52040 47984789 ~ 47992007 (+)
LOC110487551 LOC106606928 coding downstream 100443 48033192 ~ 48037545 (+)
LOC110486621 grap2 coding downstream 143232 48075981 ~ 48091316 (+)
G1181941 NA non-coding upstream 194660 47732130 ~ 47732387 (+)
G1181927 NA non-coding upstream 201874 47724824 ~ 47725173 (+)
G1181774 NA non-coding upstream 223880 47601655 ~ 47703167 (+)
G1181660 NA non-coding upstream 328811 47598070 ~ 47598236 (+)
G1182094 LOC106601460 non-coding downstream 66849 47999598 ~ 48003504 (+)
G1182107 NA non-coding downstream 92435 48025184 ~ 48025774 (+)
G1182110 NA non-coding downstream 99429 48032178 ~ 48032404 (+)
LOC110486620 LOC106601507 non-coding downstream 160259 48093008 ~ 48102030 (+)
G1182130 NA non-coding downstream 175027 48107776 ~ 48108141 (+)
G1181955 NA other upstream 183983 47742361 ~ 47743064 (+)
G1181636 NA other upstream 377499 47549279 ~ 47549548 (+)
tmem100a LOC106606948 other upstream 457035 47468012 ~ 47471205 (+)
G1181472 NA other upstream 552570 47374163 ~ 47374477 (+)
LOC110485193 LOC106601421 other upstream 1590769 46302751 ~ 46336386 (+)
G1182153 NA other downstream 186864 48119613 ~ 48122575 (+)
G1182354 LOC106601550 other downstream 623265 48556014 ~ 48561624 (+)
G1182541 NA other downstream 1014000 48946749 ~ 48947969 (+)
G1182555 NA other downstream 1045251 48978000 ~ 48981403 (+)
G1182595 NA other downstream 1131036 49063785 ~ 49065142 (+)

Expression

LOC110486609(LOC106601450) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 2.
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LOC110486609(LOC106601450) Expression in each Bioproject

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LOC110486609(LOC106601450) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
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Co-expression Network