LOC110486608 (LOC106601451)


Basic Information

Item Value
gene id LOC110486608
gene name LOC106601451
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 47933041 ~ 47934339 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558339.2
ATTAACCCTCTCTTCGATCTAAAACAAATGGATATGGTTATATTCTAATTTGGCTGTATTTTGTGTATTTGATATAAGATTGAACAGCCTCACTGTCCCTCTCAGGAACCTGATGCCCAAAGCTCTGGAGGGCCAGGTGGTCCTGGAGAAGACACCCAGGTACTTTGTGACGGCGGATAGCCCCGGCCGGATCCACTCCATGTCCCAGGAGGTCAAACTGATCGTGGTGGTGCGTGACCCTGTGACCCGCGCCATCTCTGACTACACCCAGATCATATCCAAGACTCCTGGCGTTCCCAGCTTTGAGACCCTGACGTTCCATAACGGGACGGAGGAGGCGTTGAAGGTGGACTCCCTGTGGAGCCCCATCTGGATTGGCCTGTATGCTCTGCACCTGGAGAGGTGGCTGGCCCACTTCCCCTTGGACCAGATCCACTTTGTCCATGGGGAGAGGCTGGTGAGCGACCCTGCAGGGGAGCTGGGCAGAGTCCAAGACTTTCTGGGCCTTCAGAGGATCATCACAGACAAACACTTCTACTTCAACAAGACAAAGGGTTTCCCCTGCCTGAAGAAGCCAGAGGGCAGCAGCAAGCCCCACTGCCTGGGCAGAACCAAGGGCAGGCCACATGCTGACATCCACCCTCAGGTCATCCTCAGGTTACGTCAGTTCTACCAGCCACACAACCTGCGCTTCTACCAGATGACAGGGCAGGACTTTGGCTGGTAGGATGGGAGCCTAGAAAGAGGTGGAAAAAAGATGATACCATCGTTACTGTTCAAAACACAGGCTGCACGAAGAGGATACAGGACAAAGCTTGAATTGGTGTATTTTGTGACGGTCCTGATGTCATCTGGAGTAACTCAAGTCCTCATGCAACCTGTATTGGCAAACAAATCAAAACAGTCACACTTTATTTTGTGACAGTTAAACCGCAAGAAGTAACGTGAGTAATGCCATAGGCCTACTGTGTAACACCATGGAAAGTGACAACAACATCCACCGTCAGAAAGCAGGTCCTCAGAACTCTAGTGTGAACTTACCCTTTactccactagatggcagtcCTTCCCCAACAGAGGCTTAGACGGTATTGTCGAGGTACTGTAAACTACTTGGAAAAATGTGGATTTGTGGTCATGATCGtcatacacatttttttctgtagTCAGATTGAGCAAGTATTACCATAAGAAATGACATGGCATCCCATAATTTAAATCCAAGACAATTCAAGGCAGCTGCATTGGCAAATACTTGAAATATTTAGTAGAGTCCTGCATTGATCCATTCAGTCTGTA

Function

NR:

description
heparan sulfate glucosamine 3-O-sulfotransferase 3A1-like

GO:

id name namespace
GO:0008146 sulfotransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558339.2 True 1299 mRNA 0.49 1 47933041 47934339

Neighbor

gene id symbol gene type direction distance location
LOC110486610 reco coding downstream 11271 47919564 ~ 47921770 (-)
LOC110486606 LOC105899468 coding downstream 61187 47860198 ~ 47871854 (-)
LOC110486602 map2k4 coding downstream 102264 47817718 ~ 47830777 (-)
LOC110486601 rnz2 coding downstream 117977 47806224 ~ 47815064 (-)
LOC110486600 LOC106606953 coding downstream 225490 47638574 ~ 47707551 (-)
LOC110486611 LOC106601455 coding upstream 11022 47945361 ~ 47948136 (-)
LOC110486613 LOC106601452 coding upstream 13985 47948324 ~ 47954054 (-)
LOC110486618 LOC106606909 coding upstream 65242 47999581 ~ 48015951 (-)
LOC110486619 LOC106606937 coding upstream 107331 48041670 ~ 48072432 (-)
LOC110486622 LOC106601465 coding upstream 175118 48109457 ~ 48118413 (-)
G1182954 NA non-coding downstream 42241 47890593 ~ 47890800 (-)
G1181978 NA non-coding downstream 175394 47757427 ~ 47757647 (-)
G1181977 NA non-coding downstream 176174 47756640 ~ 47756867 (-)
G1181974 NA non-coding downstream 178506 47754242 ~ 47754535 (-)
G1181958 NA non-coding downstream 187693 47745005 ~ 47745348 (-)
G1182992 NA non-coding upstream 27588 47961927 ~ 47962271 (-)
G1182993 NA non-coding upstream 27953 47962292 ~ 47962810 (-)
G1182996 NA non-coding upstream 33857 47968196 ~ 47969726 (-)
G1182997 NA non-coding upstream 35470 47969809 ~ 47970255 (-)
G1183001 NA non-coding upstream 54374 47988713 ~ 47991990 (-)
LOC110486594 LOC106601485 other downstream 466355 47460436 ~ 47466735 (-)
LOC110486593 LOC106606954 other downstream 499644 47432406 ~ 47433949 (-)
LOC110486590 LOC105022923 other downstream 1018023 46827752 ~ 46915018 (-)
LOC110486586 ubald2 other downstream 1397396 46510585 ~ 46535713 (-)
G1179621 LOC106607015 other downstream 2400379 45531858 ~ 45532662 (-)
G1183013 NA other upstream 90762 48025101 ~ 48025776 (-)
G1183126 NA other upstream 325185 48259524 ~ 48259989 (-)
G1183190 NA other upstream 427259 48361598 ~ 48365100 (-)
G1183192 NA other upstream 429717 48364056 ~ 48376966 (-)

Expression


Co-expression Network