LOC110486611 (LOC106601455)


Basic Information

Item Value
gene id LOC110486611
gene name LOC106601455
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 47945361 ~ 47948136 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002468093.2
GCATTGGGAAAGACTGCGCACAGCCACGAGCGAGAACTGACTCTTGAACAAGACAATCGATATGGCTTTACGAAAATTGATTTTTCGCGTCTATGCATTGAACAGCAAACCTAATTCTGTAAAGGTTTTGAATACTCATATGTCTGCCTTTAGTGTATTGAGTCCTAACACCGATTTGAGAGTAAAACATGACCGACACAACCTCTGCTTTTCTATCAACCTGGACGGCGAAGGACATCAGGATAGCGCGGTGCTGCGCTACAAATTTACGAGCAAGAAGGAGGTAGATCTACTGTCAACTTATGTACCCGAGTCTTTCAGGGGCAAAGGAGTTGCAGCTCTTCTGTCAAAGGCTGCCATGGATTTTCTGGTGGAAGAAAACCTCAAGGCCCATATATCTTGTTGTTATATTAAGAAATATGTTGAGGAAACCACACTTCTTGGTTATAAGGATCTTATTATAGTCTGAATAAGCTGCATCCTTGAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002468093.2 True 487 mRNA 0.42 3 47945361 47948136

Neighbor

gene id symbol gene type direction distance location
LOC110486608 LOC106601451 coding downstream 11022 47933041 ~ 47934339 (-)
LOC110486610 reco coding downstream 23591 47919564 ~ 47921770 (-)
LOC110486606 LOC105899468 coding downstream 73507 47860198 ~ 47871854 (-)
LOC110486602 map2k4 coding downstream 114584 47817718 ~ 47830777 (-)
LOC110486601 rnz2 coding downstream 130297 47806224 ~ 47815064 (-)
LOC110486613 LOC106601452 coding upstream 188 47948324 ~ 47954054 (-)
LOC110486618 LOC106606909 coding upstream 51445 47999581 ~ 48015951 (-)
LOC110486619 LOC106606937 coding upstream 93534 48041670 ~ 48072432 (-)
LOC110486622 LOC106601465 coding upstream 161321 48109457 ~ 48118413 (-)
LOC110486627 apol3 coding upstream 262617 48210753 ~ 48215730 (-)
G1182954 NA non-coding downstream 54561 47890593 ~ 47890800 (-)
G1181978 NA non-coding downstream 187714 47757427 ~ 47757647 (-)
G1181977 NA non-coding downstream 188494 47756640 ~ 47756867 (-)
G1181974 NA non-coding downstream 190826 47754242 ~ 47754535 (-)
G1181958 NA non-coding downstream 200013 47745005 ~ 47745348 (-)
G1182992 NA non-coding upstream 13791 47961927 ~ 47962271 (-)
G1182993 NA non-coding upstream 14156 47962292 ~ 47962810 (-)
G1182996 NA non-coding upstream 20060 47968196 ~ 47969726 (-)
G1182997 NA non-coding upstream 21673 47969809 ~ 47970255 (-)
G1183001 NA non-coding upstream 40577 47988713 ~ 47991990 (-)
LOC110486594 LOC106601485 other downstream 478675 47460436 ~ 47466735 (-)
LOC110486593 LOC106606954 other downstream 511964 47432406 ~ 47433949 (-)
LOC110486590 LOC105022923 other downstream 1030343 46827752 ~ 46915018 (-)
LOC110486586 ubald2 other downstream 1409716 46510585 ~ 46535713 (-)
G1179621 LOC106607015 other downstream 2412699 45531858 ~ 45532662 (-)
G1183013 NA other upstream 76965 48025101 ~ 48025776 (-)
G1183126 NA other upstream 311388 48259524 ~ 48259989 (-)
G1183190 NA other upstream 413462 48361598 ~ 48365100 (-)
G1183192 NA other upstream 415920 48364056 ~ 48376966 (-)

Expression


Co-expression Network