LOC110486612 (LOC106601453)


Basic Information

Item Value
gene id LOC110486612
gene name LOC106601453
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 47952948 ~ 47960452 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558342.2
GTTTCTATGATATTTATTCCCTGATCTGCACACTGTTGGAATGTTTGGCTACTCTCTCATCTGGGTTTCTACTGTGTAGCTATGTTTTATCACTCTGTGGAATGGGTAGCGCAAGCAGTTTGCCGACTGGAAAAATCCATGGAGCCGTCTACTACAGTACTGTGCAATTACAGCTAGCTGGACTCTGGACAGCCAAGTCTGATCCGTCAAGGCAGTCAGGCAGATACAGAATATCATCGGTTTAAAATATTGCATTAATCATGGCTGATTTTGAGGAATTCGAAAAACAGCTGAGCGAAAACCGACAGGagagagagaaagagagacgcaAGAAGAGGAGCGGCAGTGGGTCTCAGAGCCGCAGTGAGAAACATCGCAGCTGGAGCAAAGACCGGGGCAACCGGAGCCGAGAGAAGCGAAGCCGCAGTAGAGACAGGAAGAGCCGGGAGCAGAGGAGCACCTCGCGGGATCACAAGAAGCACAGCTATTCTCCACGAAGAACAAGGAGGAAAAGGACCTGCAGATACTGGGATGTGCCTCCCCCTGGCTTTGAACACATCACACCATTGCAGTACAAAGCTATGCAAGCGGCTGGGCAGATACCCACAATAGCCCTGCTGGCATCATCTGCCATGAGTGGGTTGGCAGTAACACCCACCCAAGTGCCCATAGTTGGCAGTCAGATGACTAGGCAGGCTCGACGTCTCTATGTTGGCAATATTCCCTTTGGAGTGACGGAGgaGTCCATGGCAGAATTCTTCAATGCCCAAATGAGGCTTGCAGGCCTATCGCGAGCCCCTAGCATCCCTGTGCTTGCTGTGCAGATAAATCAGGATAAAAACTTTGCATTCCTAGAGTTCCGGTCTGTCGATGAGACCACACAGGCCATGGCTTTCGATGGAATCATTTTCCAAGGTCAGTCGTTGAAGATAAGACGACCACATGACTACCGGCCCCTACCTGGCATTTCAGAGCAGCCTGCTTTTCATGTCCCAGGTGTCGTGTCCACAGTGGTACCAGACTCCCCACATAAACTGTTTATTGGAGGCCTTCCCAACTATCTCAATGATGATCAGGTGAAGGAGCTCTTGACATCATTCGGACCACTCAAAGCTTTCAACCTTGTCAAGGACAGTGCCACGTCACTTTCCAAAGGTTATGCCTTTTGTGAATATGTTGACATCAGTGCGACTGATCAGGCGGTGGCTGGGCTCAATGGCATGCAACTGGGTGACAAAAAGCTCATCGTCCAGAGAGCAAGTGTGGGAGCCAAAAACGCCAATCCGACTGCCATCATCGAGACCCCGGTGATGCTGCAGGTTCCTGGGCTGCAGGGACTTCAGAACTCTGGGCTGCCCACGGAGGTGCTGTGCCTGCTCAACATGGTGATGCCTGAGGAGCTTGTGGATGACGAGGACTACGAGGAGATCCTGGAGGACATTAGTGAGGAGTGCTGCAAGTACGGCAGCGTGCGCTCCATCGAGATTCCCCGGCCTGTCGAAGGAGTGGAGGTCCCTGGCTGTGGCAAGATCTTTGTGGAGTACGTTTCTGCTGCAGACTGTCTGAAAGCCATGCAGGCCCTCACTGGCCGCAAGTTTGCCAACAGAGTGGTGGTAACCAAATACTATGATCCAGACATGTATCACAGACAGGAGTTCTCAGGGTAGAGGGGAAACAGGAGGCAATACATGGAATTAACTGGGACCTCCTCTTTCCTGCTTCCTCAAACCTGGTTTCAGCTCTTCAGTATCgtgtgttctgtctccagtaTTCACAGCTAGTACGTTGTAACCCTATTCTCATTTACTACAGTAGTTCAGATTTTTGTGAAAAAATACTAGATTTTTACATGCGTCTTTTAGATACTCTAACTGATATATTACACCAACAAAAAATATCTGTGTGCAGTGAATTAATTTAGTCTGAAAtgtatacaaataaataaaaccatGCTATTTGTGTAGGATTCCCTTTGCAGAAGTAGTATGAATGTCATGTGTGCTTAGATCTAAAACCAGACTGTAACGTAGCCAGTGTTGCTGTCTTTCTTAACTCTGGAGTCAATGAGATGATACAAAAGTGAAATGTTTAGATTTCTATTCTGAGCACAAGCTTATTTTGTCTCTTAACTTAAAGAATTGTTAAGTCGAGATGAACCTATATTTGATAGCTATCATACTTCCACTGTGTGATTCTGAGAAgtaactaacagtgaaatgttattGTATAccccccagagtcagatgaacttgtgaaTACCATGTTTATgcctctgcatccagtatgaaggaagttagaggtagtttcacgagCCAAGTACCATAGACTCCCAGTCATtgagctaacgctagttagcaacttccttcaaactgcatgtagagacataaaaatggtttcCACAGGTTCATCTTACTCTAGGGAAGTAGAAAACAAAATCCTGAAGTTTAAAATTCAAACACCTAAAACTCGTGTTAGAAAAACACTCTCAACACTAATAATTACAAACAGTGAACAAAACAATTGTTTCAACAAAGTCATGATTTGGGCATTTTCGCAGCGGTTTAAACCCATAACCTTGAAATTTGCAGATTGTTTTGTGTTCATGCTCTGGATTAAGAATTTGTGTCATTTAGATTGTAGCATAAAATTACAAGGTCACAAAAATACCATACTGGCCATAGAATGGATATTATGCATAGTTTTTTGAATAAGAAATATTTGGTCATCCTACAGGAAAAGGCGAGGAGATTTTAGAAGATGTGCTTTCaatttatgtaaataatgtatgtaGCTAATGTATATCCTGTGTATTTGTTATCTGATGCTTTCGCAATTGTATGGAAGAAAATTGGTTAATTTATTTTTACCCAAAGGTTTTTTAAGCTTCATGAAAATTGCAGACGTGAGTTGATCCAACATTGTCGTCATATGACAGTAATTAATATCATTCATCATTACAGTGAGACTACCGTTGAGTGTTTttattatgtactgtatatcacatACGATTACAACAAAAACAGTATGCTTCATTATGGGTACATAGGAAATCAGCTTTCAACTAAATAAATGCAGTTCATTGATTCAAAAGAGGTATAAATACTGTTTTTGTAAATGTGGTTTTGAATGTGCCAAATCTGAAAGCATTTTTATGTACACCTCTAACCTGCCATTGTCATGCCTTGAATAAATGCCTGCATCTTC

Function

NR:

description
splicing factor U2AF 65 kDa subunit-like

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12837 U2AF2; splicing factor U2AF 65 kDa subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558342.2 True 3204 mRNA 0.43 11 47952948 47960452

Neighbor

gene id symbol gene type direction distance location
LOC110486609 LOC106601450 coding upstream 20199 47927047 ~ 47932749 (+)
LOC110486607 LOC106601502 coding upstream 40500 47875406 ~ 47912448 (+)
LOC110485199 NA coding upstream 94706 47847412 ~ 47858242 (+)
LOC110486603 LOC106606941 coding upstream 116611 47833234 ~ 47836337 (+)
LOC110486605 tmem220 coding upstream 120017 47830848 ~ 47832931 (+)
LOC110486615 NA coding downstream 1562 47962014 ~ 47984490 (+)
LOC110486616 LOC106601459 coding downstream 24337 47984789 ~ 47992007 (+)
LOC110487551 LOC106606928 coding downstream 72740 48033192 ~ 48037545 (+)
LOC110486621 grap2 coding downstream 115529 48075981 ~ 48091316 (+)
LOC110486620 LOC106601507 coding downstream 133959 48093008 ~ 48102030 (+)
G1181941 NA non-coding upstream 220561 47732130 ~ 47732387 (+)
G1181927 NA non-coding upstream 227775 47724824 ~ 47725173 (+)
G1181774 NA non-coding upstream 249781 47601655 ~ 47703167 (+)
G1181660 NA non-coding upstream 354712 47598070 ~ 47598236 (+)
G1182094 LOC106601460 non-coding downstream 39146 47999598 ~ 48003504 (+)
G1182107 NA non-coding downstream 64732 48025184 ~ 48025774 (+)
G1182110 NA non-coding downstream 71726 48032178 ~ 48032404 (+)
G1182130 NA non-coding downstream 147324 48107776 ~ 48108141 (+)
G1181955 NA other upstream 209884 47742361 ~ 47743064 (+)
G1181636 NA other upstream 403400 47549279 ~ 47549548 (+)
tmem100a LOC106606948 other upstream 482936 47468012 ~ 47471205 (+)
G1181472 NA other upstream 578471 47374163 ~ 47374477 (+)
LOC110485193 LOC106601421 other upstream 1616670 46302751 ~ 46336386 (+)
G1182153 NA other downstream 159161 48119613 ~ 48122575 (+)
G1182354 LOC106601550 other downstream 595562 48556014 ~ 48561624 (+)
G1182541 NA other downstream 986297 48946749 ~ 48947969 (+)
G1182555 NA other downstream 1017548 48978000 ~ 48981403 (+)
G1182595 NA other downstream 1103333 49063785 ~ 49065142 (+)

Expression


Co-expression Network