LOC110486616 (LOC106601459)


Basic Information

Item Value
gene id LOC110486616
gene name LOC106601459
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 47984789 ~ 47992007 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558358.2
ggaccaacactgcttagcttcagaagcaagccatgTCAAGTAATCTAatgataaattaaattgatttattttaAATAATTGTGTGACCTTTTATCAGTCTGCTACTGAATAATCATCACATAATCAAATCGTCAGAGGACAGGGAAATATACAAAATATTCTATGaatgtattatattttattttacaacGAAAAAATTAACATCTTTATCATGAATGGAAATTCATACATTTATCATtattaataaaatatttgttcAGGTCCACATCAAATGAAACTGACAAAACTCTCATCTCCCATAATGCATTGCCCGTTTACCACAAGCTGCCAACTGAGTTCTTTACCAATGCAAGTAAACTACGAGATGCTCTTTTTGGAAAGGGAGCACCCCTTCAGCTTACTTTATTAATTTCTATAAGGTTATGGAGCTGTCGTCTCAAGACCCTCATCCTATGGCTTTGGATCTCTCAAAGAGATGTGGGAAGAGTCATCTGAATCCCAGGACCACAGAGGTTCTGGACCTAATGAAGAAGCCCAGCTGGCACAGCATCACTGATGACCATGTGTCCATGCCCTGCATGCAGCTCCTCTCTGAGAAAACACTAACAGACACAGGTGTCAGACTTTCCTACGGGACTAGGACTTGTGTTCGCTCCCCCCTTTTACATAATGGTATGGACAGAAGCTTACGGGACTCAGGGTTGTACGAGCCACACCCTACAGAGAGCCTAAATGCAGAGAGTCCCATTTCTGAAAGTATTGAGGGAGACGAGAGTCAGAGTGACTCTGATGTCATTTTGCTTGTTTCCAGTTCTAAGGAAGCACCCTCACCTCAGGACTATTTAGACAGGGGATCTGTTAGTCCCTTAGTGGATTCTCCGTCCCCTGGCGCTGTCTCTTTGGGTGAAGCTAAAGGTTGTTTTCTACTGCCCCAGACACTGAGTTGCCCCAGTCCTGACAATACATATTCAGAGGATTCATCTGAAAGCACAGAGGAGATGTCAGTGAATGCAAAACCTGTTCTTAACCTGTCGGAATTAGCCGCTGTGTATGGGAAATATGTCAGGGCTCCTGTGGATATCTCAAGTGATGATAGTGATGTCATTGAAGTTCCCATCACCAATGAAAAGAAAAAGATTCACACTTTACCTGTTTGTCTTCAAAATGAGAAAAGTCTGACAGGTGAAGCTAgtaatattgtaaaaaaaatccTTTCTACACATCCTAGAACAATACAGCCTGGGGTCAGCTCTCAGAAACTCATCAACAATGTCACTCGCCATCATTCAAAATTACATACCAAAAACTCAAGTAGAGTATTACCCAAGGAACATTCTGGCAACACAATGGACTCAAAAGAGAAGTCATCTAGTTCAGAGGATGAGTCTTGGTTACAGCCAACTGTCTACCTGTACAGGTGTGTCGTAGAATCTGATGACTCTGATGTGGACCGTCGGACAGTTCGACAGGACCCCTCTGAGAGCCTACGTTCCTCTAGAAGGCTACAGAGAGGATCATCACCTGCTACAGAGTCAAGGACCAAGGCCACACATGTGGAAGACACCCAACAGGAGTGGACAAAGCCCTCCTCACCCTGGAGCAAAAGGTCAGGAACCAAGCAGAAAACCCACCAGAGAAGCCCAGCAAAGCAGGCCTCAAGTAGTAGAAAAGCAGCAGCAAGTAAAACAAAACGGAGGAGGGAGAAACACAAACAAGCCGGCTCATCCTCCATGTTCTCCCATGAAGAGGCAGAAATCAAGCTGAAATATGCAAACTACAAACAGGACAAAAGGGCCAGTAAATCAGAGGACTTTTGCCCTTTTGTGCACATGGAGCAGAGGGAGTACTCTGCTTGTACAGTGATCAACGATCAGCAGGAGGAGAAGGATGTGACGCGGAACAAAGGACAGCAACAACAACCAACTGGGTCTTTGTCTGGTGTCGTTCCTAAGACGTCTTGTTATCGTCTGGGTCGCCTCAGCTCAAAGAGTAAGTGTCAGCCCCTAATGGTGTGCTGCCTGTGTGGTGGGTCTGCTAATGCTGTGGGCCTAGGGGACCTACACGGACCTTACTATCCAACTGAACCTGCTTTGGAGGAACAAGGCAAACAGCAGGCCCAGAGGGAAGAATTCAAGGACAGTGAACTGTCTGTAGATTGTAAGATAGGCCTATGTGGTCAGGTAGGGGAGAATGGGTTACATGAACTGAGCAATGCTGTAGTTGATGACTGCTGCATCACAGTCAGTGATAGTGAAAGCTCCACATTGCCTTCAGCCAAAAAGCTCAGAACAAATGGCTGCGTGATGGATGGCCACAGTCTGCCTGTGGTGCCCCACAACACCAATGAATGCTGGATCCACGAGGACTGTGGCATATGGTCCACAGGTGTTTTCTTGGTTAAAGGAAAGCTCTACGGCTTGGAGGAGGCTGTTCGGTTCGCCCAAGAAACAGTGTGTTCAACATGCCACGCAGCAGGTGCAACCATGGGCTGCTTCCAGAAAGGGTGCCCCAATAAGTACCACTACTGCTGTGCAGCTCAGTCAGGCTGTGTGCTTAATGAGGAAAACTTCTCCATGAGATGTCCAAAGCACAAGAATAAATCATTCAGAGGTGTGAACATGCCAGAAAACAGATGACAGGAGAGAAGGAATTGGACACCATGGAAGCTAAACCCCATTGGCAGCAGCCATCGGATAGATACTCTCCTTCACCCCAGAGAAGAGGCTGTGGAAGAACTGCAACATTctattcatgttttcttttatcTCTTGAATGTTTACATTGAGTCCATGTTACTTTAGTATTATTAATGATTCTGAATTGATTGTACCAGTGAAGCCAAATGCTCTTATTGTGTGTCTGCCTGCAGATGGCCGTAGTCTTTTTGGCCCATCTCCACTGTGGAAGCTTGAGAGTTGTGTTGCCAGGTTTTGTTGTGCTGTTTGCTTTGTTGAAAgaccaaaatgttttattttgtttaaGTTTTATATCTATGTTGGTCTTTTTACCTTTTAATACTGAATTGACGATTGACATGTTTTTGTGTTCACAATGTGTGACAGACTTGCTATTGTTTCCTTATTTGATAGGAACCTTTATTTAATAGGAACCTTGAGAGGACAATAGTTGAGTTCAGTATTCATCCTAATTAACAGTGATTGAAAGGCCAACCAGTCACTCCCCTGATAATATGACTTGTTTTGCAAGATTGCTACTTTGAAATTCAGATTTCTGTACGTTACTATAAGGATTTTTGCATCTCAGATTATCCTGGTGGTATGCTTTGGTAATCATTCGGAACTAAAGGGCAACAGAGGAAGTGATGGATCTCCAGAAAGGCTTCTGTGGCTGCgcttacacaggcagcccaattcagatatttttcccactaattggtcttttgaccaatcacttCAGATCTTTTCGCATCAGATCTAGTtcagatctgattggtcaaaagaccattttagttaaaagaaatATCAGAATTTGGCTGCCTATCTAAATTCAGTCATAAAGGCATATTTATTTTCTATTTATGATTTAATCATGTTGTGCATATTTATTTATGTAATGTTCAGCTGACATGGTGGTAGTGCTGCTCAATGAGGAAAAGGTACAATGTCTGTTTTGCACAAAGTTTGCAAAGGTTGGTACattcaacccactgggcacacactggttgaatcaacgttgtttccacgtcatttcaattacGTTGAACCACTGTGGAATAGACGTTgcattgacgtctgtgcccagtgtgaaGTGATTTTGAATTTGACCTGATATCATTGGCTCCAGAGATTATGATTTTATACTGGGTTCTGTTAATGCAGTCCATTAAGGAAATGTATGGGTGTTCCAGTCTTACATATGTGTGAGGAAGAGATGGCTGACACATGGAATTAATTGTCTGTAACAGCTTGTAACTGTTGCCTTTTTGTCACCTGTTTGAATAAAATCGGACATTCCTGTGTACGT
>XM_021558360.2
TTTCCAATATAATGGGTCCTCGGCAACATGTTTGTTATAACGCATGTTATTATGGATGAATAGCGAGCTAactccagctagctagctaaagtcgGGTTGTCAACACAGtcgctggctaacgttagctgtggTTATATTGCGGCTTTGTTTACACACTGTTTACAAAGGCCTGGATgcaagtagctagctagccactaaCCAGCTATCGTAATCAGTGCACTCACCTGCAGCAAGGAACGACGAAGGGTTATGGAGCTGTCGTCTCAAGACCCTCATCCTATGGCTTTGGATCTCTCAAAGAGATGTGGGAAGAGTCATCTGAATCCCAGGACCACAGAGGTTCTGGACCTAATGAAGAAGCCCAGCTGGCACAGCATCACTGATGACCATGTGTCCATGCCCTGCATGCAGCTCCTCTCTGAGAAAACACTAACAGACACAGGTGTCAGACTTTCCTACGGGACTAGGACTTGTGTTCGCTCCCCCCTTTTACATAATGGTATGGACAGAAGCTTACGGGACTCAGGGTTGTACGAGCCACACCCTACAGAGAGCCTAAATGCAGAGAGTCCCATTTCTGAAAGTATTGAGGGAGACGAGAGTCAGAGTGACTCTGATGTCATTTTGCTTGTTTCCAGTTCTAAGGAAGCACCCTCACCTCAGGACTATTTAGACAGGGGATCTGTTAGTCCCTTAGTGGATTCTCCGTCCCCTGGCGCTGTCTCTTTGGGTGAAGCTAAAGGTTGTTTTCTACTGCCCCAGACACTGAGTTGCCCCAGTCCTGACAATACATATTCAGAGGATTCATCTGAAAGCACAGAGGAGATGTCAGTGAATGCAAAACCTGTTCTTAACCTGTCGGAATTAGCCGCTGTGTATGGGAAATATGTCAGGGCTCCTGTGGATATCTCAAGTGATGATAGTGATGTCATTGAAGTTCCCATCACCAATGAAAAGAAAAAGATTCACACTTTACCTGTTTGTCTTCAAAATGAGAAAAGTCTGACAGGTGAAGCTAgtaatattgtaaaaaaaatccTTTCTACACATCCTAGAACAATACAGCCTGGGGTCAGCTCTCAGAAACTCATCAACAATGTCACTCGCCATCATTCAAAATTACATACCAAAAACTCAAGTAGAGTATTACCCAAGGAACATTCTGGCAACACAATGGACTCAAAAGAGAAGTCATCTAGTTCAGAGGATGAGTCTTGGTTACAGCCAACTGTCTACCTGTACAGGTGTGTCGTAGAATCTGATGACTCTGATGTGGACCGTCGGACAGTTCGACAGGACCCCTCTGAGAGCCTACGTTCCTCTAGAAGGCTACAGAGAGGATCATCACCTGCTACAGAGTCAAGGACCAAGGCCACACATGTGGAAGACACCCAACAGGAGTGGACAAAGCCCTCCTCACCCTGGAGCAAAAGGTCAGGAACCAAGCAGAAAACCCACCAGAGAAGCCCAGCAAAGCAGGCCTCAAGTAGTAGAAAAGCAGCAGCAAGTAAAACAAAACGGAGGAGGGAGAAACACAAACAAGCCGGCTCATCCTCCATGTTCTCCCATGAAGAGGCAGAAATCAAGCTGAAATATGCAAACTACAAACAGGACAAAAGGGCCAGTAAATCAGAGGACTTTTGCCCTTTTGTGCACATGGAGCAGAGGGAGTACTCTGCTTGTACAGTGATCAACGATCAGCAGGAGGAGAAGGATGTGACGCGGAACAAAGGACAGCAACAACAACCAACTGGGTCTTTGTCTGGTGTCGTTCCTAAGACGTCTTGTTATCGTCTGGGTCGCCTCAGCTCAAAGAGTAAGTGTCAGCCCCTAATGGTGTGCTGCCTGTGTGGTGGGTCTGCTAATGCTGTGGGCCTAGGGGACCTACACGGACCTTACTATCCAACTGAACCTGCTTTGGAGGAACAAGGCAAACAGCAGGCCCAGAGGGAAGAATTCAAGGACAGTGAACTGTCTGTAGATTGTAAGATAGGCCTATGTGGTCAGGTAGGGGAGAATGGGTTACATGAACTGAGCAATGCTGTAGTTGATGACTGCTGCATCACAGTCAGTGATAGTGAAAGCTCCACATTGCCTTCAGCCAAAAAGCTCAGAACAAATGGCTGCGTGATGGATGGCCACAGTCTGCCTGTGGTGCCCCACAACACCAATGAATGCTGGATCCACGAGGACTGTGGCATATGGTCCACAGGTGTTTTCTTGGTTAAAGGAAAGCTCTACGGCTTGGAGGAGGCTGTTCGGTTCGCCCAAGAAACAGTGTGTTCAACATGCCACGCAGCAGGTGCAACCATGGGCTGCTTCCAGAAAGGGTGCCCCAATAAGTACCACTACTGCTGTGCAGCTCAGTCAGGCTGTGTGCTTAATGAGGAAAACTTCTCCATGAGATGTCCAAAGCACAAGAATAAATCATTCAGAGGTGTGAACATGCCAGAAAACAGATGACAGGAGAGAAGGAATTGGACACCATGGAAGCTAAACCCCATTGGCAGCAGCCATCGGATAGATACTCTCCTTCACCCCAGAGAAGAGGCTGTGGAAGAACTGCAACATTctattcatgttttcttttatcTCTTGAATGTTTACATTGAGTCCATGTTACTTTAGTATTATTAATGATTCTGAATTGATTGTACCAGTGAAGCCAAATGCTCTTATTGTGTGTCTGCCTGCAGATGGCCGTAGTCTTTTTGGCCCATCTCCACTGTGGAAGCTTGAGAGTTGTGTTGCCAGGTTTTGTTGTGCTGTTTGCTTTGTTGAAAgaccaaaatgttttattttgtttaaGTTTTATATCTATGTTGGTCTTTTTACCTTTTAATACTGAATTGACGATTGACATGTTTTTGTGTTCACAATGTGTGACAGACTTGCTATTGTTTCCTTATTTGATAGGAACCTTTATTTAATAGGAACCTTGAGAGGACAATAGTTGAGTTCAGTATTCATCCTAATTAACAGTGATTGAAAGGCCAACCAGTCACTCCCCTGATAATATGACTTGTTTTGCAAGATTGCTACTTTGAAATTCAGATTTCTGTACGTTACTATAAGGATTTTTGCATCTCAGATTATCCTGGTGGTATGCTTTGGTAATCATTCGGAACTAAAGGGCAACAGAGGAAGTGATGGATCTCCAGAAAGGCTTCTGTGGCTGCgcttacacaggcagcccaattcagatatttttcccactaattggtcttttgaccaatcacttCAGATCTTTTCGCATCAGATCTAGTtcagatctgattggtcaaaagaccattttagttaaaagaaatATCAGAATTTGGCTGCCTATCTAAATTCAGTCATAAAGGCATATTTATTTTCTATTTATGATTTAATCATGTTGTGCATATTTATTTATGTAATGTTCAGCTGACATGGTGGTAGTGCTGCTCAATGAGGAAAAGGTACAATGTCTGTTTTGCACAAAGTTTGCAAAGGTTGGTACattcaacccactgggcacacactggttgaatcaacgttgtttccacgtcatttcaattacGTTGAACCACTGTGGAATAGACGTTgcattgacgtctgtgcccagtgtgaaGTGATTTTGAATTTGACCTGATATCATTGGCTCCAGAGATTATGATTTTATACTGGGTTCTGTTAATGCAGTCCATTAAGGAAATGTATGGGTGTTCCAGTCTTACATATGTGTGAGGAAGAGATGGCTGACACATGGAATTAATTGTCTGTAACAGCTTGTAACTGTTGCCTTTTTGTCACCTGTTTGAATAAAATCGGACATTCCTGTGTACGT

Function

NR:

description
uncharacterized protein CG5098-like

GO: NA

KEGG:

id description
K24769 TCF20; transcription factor 20

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558358.2 False 3984 mRNA 0.43 6 47984789 47992007
XM_021558360.2 True 3811 mRNA 0.44 6 47985236 47992007

Neighbor

gene id symbol gene type direction distance location
LOC110486615 NA coding upstream 299 47962014 ~ 47984490 (+)
LOC110486612 LOC106601453 coding upstream 24337 47952948 ~ 47960452 (+)
LOC110486609 LOC106601450 coding upstream 52040 47927047 ~ 47932749 (+)
LOC110486607 LOC106601502 coding upstream 72341 47875406 ~ 47912448 (+)
LOC110485199 NA coding upstream 126547 47847412 ~ 47858242 (+)
LOC110487551 LOC106606928 coding downstream 41185 48033192 ~ 48037545 (+)
LOC110486621 grap2 coding downstream 83974 48075981 ~ 48091316 (+)
LOC110486620 LOC106601507 coding downstream 102404 48093008 ~ 48102030 (+)
rac2 LOC106601467 coding downstream 127309 48119316 ~ 48136319 (+)
sstr3 LOC106601468 coding downstream 156392 48148399 ~ 48166866 (+)
LOC110486605 tmem220 non-coding upstream 151989 47830848 ~ 47832931 (+)
G1181941 NA non-coding upstream 252402 47732130 ~ 47732387 (+)
G1181927 NA non-coding upstream 259616 47724824 ~ 47725173 (+)
G1181774 NA non-coding upstream 281622 47601655 ~ 47703167 (+)
G1181660 NA non-coding upstream 386553 47598070 ~ 47598236 (+)
G1182094 LOC106601460 non-coding downstream 7591 47999598 ~ 48003504 (+)
G1182107 NA non-coding downstream 33177 48025184 ~ 48025774 (+)
G1182110 NA non-coding downstream 40171 48032178 ~ 48032404 (+)
G1182130 NA non-coding downstream 115769 48107776 ~ 48108141 (+)
G1181955 NA other upstream 241725 47742361 ~ 47743064 (+)
G1181636 NA other upstream 435241 47549279 ~ 47549548 (+)
tmem100a LOC106606948 other upstream 514777 47468012 ~ 47471205 (+)
G1181472 NA other upstream 610312 47374163 ~ 47374477 (+)
LOC110485193 LOC106601421 other upstream 1648511 46302751 ~ 46336386 (+)
G1182153 NA other downstream 127606 48119613 ~ 48122575 (+)
G1182354 LOC106601550 other downstream 564007 48556014 ~ 48561624 (+)
G1182541 NA other downstream 954742 48946749 ~ 48947969 (+)
G1182555 NA other downstream 985993 48978000 ~ 48981403 (+)
G1182595 NA other downstream 1071778 49063785 ~ 49065142 (+)

Expression


Co-expression Network