LOC110486618 (LOC106606909)


Basic Information

Item Value
gene id LOC110486618
gene name LOC106606909
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 47999581 ~ 48015951 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558361.2
CAGAGACAATAGGGCAAGTCAGGCTGACAGAGGTACTGACGAAGCAGACAGAAGCACCAGCAAAGTGATATTATTGTGCGCCGCTGTGCATATTGGCAACAAAGCGTTGAATCTGCACTATTCAGAGACACGATTTTGCACAGAAAATCAGACCAGTCCTGTAACGGTTTATCCTGCTATACAATTAAAGTTTCTGCTGAACGGAATGACAGCACCAGCTATTGCATGCAGCGCAATCTGAGAGGAACAACAGCAGTCACCAGATCCCTGTGCTCCAGGCATCTCTCCCAGGCAGAATGAGCTCCTCTCCCCATGGGTCCCACGGGTCTGGGTCCCGCACCTCCATCGACATCCTGGAGGAGCTGCAGCTCATTGCTGCCCAGAACCTGGAGAAGCTAGACATCAGCAAGTACTATGAGGTCATCAGGGAGCTGGGTAAGGGTACCTATGGGAAAGTGGACCTGGTCATCCACAAAATCAGGGGCACTAAGATGGCTCTGAAGTTCTTGAGGAAGAAAACAACCAAACTGAAGAGCTTCTTAAGGGAGTACagcatctctctctacctgtctccctgcccCTTTATCATCAACATGTTCGGCATTGCCTTTGAGACAGACGACTACTACGTCTTCGCTCAGGAGTATGCCCTGGCAGGAGACCTCTTCGACATCATTCCCCCTCAGGTGGGTCTTCCAGAGGCGGTGGCTAAGCGTTGTGTCCACCAGGTGGCCATCGCCCTGGACTACCTGCACTGTAAGAAGCTAGTCCACCGGGACATCAAGCCTGAGAATATCCTCATCTTTGACAAAGAGTGCCGTAAGGTCAAGCTGTCAGACTTCGGCATGACCCGGCGTGCCGGCTCCCCGGTGAAGCGTGTCAGCGGAACCATCCCGTACACGGCACCGGAGTTGTGCGACGCCTCGCAGCACGAAGGCTTCTGCGTGGACTACAGCACTGACGTGTGGGCCTTCGGTGTCCTCCTCTTCTGCATGCTCACCGGCAACTTCCCCTGGGAGAAGGCCCTGCCGTCGGACGCCTTCTACCAGGAGTTTGTGCGCTggcagcggcgccggacgggCACGGTGCCCTCTCAGTGGCGTCGCTTCACAGACGAGGGGCTGCGCATGTTCCGCAAGCTCCTGTCCATTGAGCAGGAGCGCCGCTGCTCTGTTAAGGAGGTTTTCAGCTACTTCAACCACCACTGGATGCTGGACACTGAGCCGGGCAGCAGCAGCGTTGCGGGAGGAGTGTCAGTGGGCAGTGGGCCCCAGGTGGAGCTCAGCTCGTCGTCATCTGAAGAGGATGTACTGGTGGACAGGCTAAAGCAGCAGAGCCTGATAGAGACCATGGGCGGACACTACTCCTCCACCggctccccctcctccaccagcAGCTACGAACGTGTCTCCCGTGACAACGGAGGAGCCGGACGCATCTTGGTGGCCACGCCCATTGAAATTTGTGTGTAGAGATTGGCtatgtgcacacacatacacacactgtataaaCACTAACATACGAAGGTCAAATAACAGAGAAAGATCTTCCTGGTTAAAGGAAGAGGTGGGAGAAcaacctggtctcatagactagaagtAACATAGCAAATGTAAATCCTCGACACTGAAATTATTATGATATGTTACTTtttgtatggttacataagacaggtggttacttaaggcaaaaacgaaagtagggtggttggtcgggtgTATAACtcgaatgtctagcaacccaaaggtttgCAAATttaaatctcatcacggacaactctagcaacttttcaactacttactagtTTTTAGCTACTtaccatgttagctaacccttcccctaaccctgacccctaacccccagcctagctagcattagccagctagctaaagttagccacCTAGataaaattcgtaacatatagtacgttttgcaaattcgtaacatattgtacgtttagaaaatttgtaacatataatacgaaATGTAATTTGTtatatatcatacaaaatgggtgatggacatccacaaattatacataccatacgaaacgaaGCGTAGCATATCATGCTAAATGGAGTGTCATGGATTTATGTACAGAGTAATACGAaattctctgagaccaggttggggaGAAAGGAAGATGAGGAAAAATGATGGTTGGTGCTTGAAGGAGGTGGTTGTTTCACTATAGATTCTGACAGACATTCCTATTGACGATTAACTCTGAGGGAATTACAAAAGACAATCACAACCAGTACTGATTACTGAACAGATGTGTGGGCGTCTGCAGGCATTTAttgatgtattgtactgtagctATATCCAGACTAAAATGTACAACAATATCAGACAGAGACAACAAACATGTGAAGGACAAAACAAGCTTTTACAGAATAGCAACATAAATGTCCTAGTAAGTTGTATTGGAGTTCACCAGATCCTATCGTAAAGCAATATGTTCAAAGCAACTTCTCTGCAAAAATGACTTCTCTGATAAATGGCTCATGGAATAATGGAATAAATGAAACCATTTTGAATCTGCTGTAGTTGCACCAGTAAAAGATAATTGGAGAGTGTAAAAGTTGGCTGTCGTTGTGACTTTTACCATAGTGCAATGTGAACCAATGGTACTATGGTGTGTTTGTATTGTATACCCTTATGTTCTGTGGGTATAAGAGCTTTATGTAATGTAGTTTTGTTCATATTATTTATTTGAGTCCTTGATTTCTGAACATATattttttctatttattttctaAAGTAGCATTAGAGATTTGACTTGTTTTATACTTTACGTTTGCCACTGTTTTACTGCTAGTGCAATTTAAGCAGCTATTTTGAAAAGGGAAACTGCATTTGACCTTCCCCCATAGCAATGTCATATAATCCCATGGAACTGCTTTTCATCTCATGTGAATGGATTATGTTGATGTTGGCCATTACCTCTTTAGCAGTAGCTATAGTGCATTATTATGTCAGTCCGAGTGTTTAGTTCACCTCCTCTTGTCTGCGTGCTATGCCTGCTAGGCCTGGTACACCATGACAGTAATGCAGTAATGGATAAGAACACCGATGCTGACTTTAGGTGATAGCCTGCAGTAGACATAACCATTAGAAGCTTAACGCTACTATGGTTTTACTTTACTTTATTGACTGTTGTGTCATGGTGACATGAGGACGAAATGTTCATGTTTTATGTAAAGCATAAAGTGGTTTCATTTAGAGTTTTCTCAGGTATACTCTTTATAATGTATTATaccatatacacaccatatacatcCTCTTTTAGGGATCATTTAAAACCTCCAGCTGAACCTACATGTTCTGTGGGCATGTCGTACCATAACTCATTTCTTATCTTTTAGCTTTTAACAGTAGGTAAAAAGGCAGAATCCTACAAATGAATTTCCTTGACTGGTCTCTTATTTTATACATTCGTTTGGTAAATTTGTACATGCAGATGTCAGATGAAAGCATCAAAGGATGaatggatgagcattttcttaaTTGCATGGTTAATAAAGAACACGTGTGAAATCAGCTCGTACAGTAATCGTTCAAAGTGAAAAATATGTGCAAAAAAATAGTTGTATAGTGACATTTTGCTGTGGCACAAATTTGCATAATTTGATATTGTTCTCAAAACAAAATCCAGGGCTGAAATAGCAAAAAATAATTGTTCCATTGTGTTTGACGTGCTGTATTTGTATAGGCTTCCATCACAAGATCACAGACGATGTAGTGGGACTATGGGGATACTACCTACATGTCCTCAAGTACGTTTGGGATGTGACTtgaattatttgttttattttgtgtggCTTACCTTTGAAATGGAAACAATATAAAAGGTGGAAAACAGGATGGGATACTGGATATCATGTCCACCATGGAAAATCTGAAATACATGAGGCATTTGGGAGAAATGCACAACAGTTCATTCTAGAATAGACTCGCCTCTCTCTGCGTGTTGtgtttttcagaaatgtttgcatgAATCAATATTGCTCTGCAGGAACGCTGTTGAAATAAATCTCTAGAGTGAAAAGTTGcagtatttatttttctgctacTGGAGAAAATACTTATTGTATGTAAACAGAGGCAAACACACTGGGCCCATTTCCCCCTCTGCCACACCCACCACCCCCTCAGAAACACACTGGGCTCTGTTTCCCCCTCTGCCACACCCACCACCCCCTCAGAAACACACTGGGCCCATTTCCCCCTCTGCCACACCCACCACCCCCTCAGAAACACACTAGACTGATCAGGAGAAAAATAAATTCAGTACTTTTttgtctttaaaaaaacatcaatgCATTTTGAAAGCAGCAGTCCAGTTCTGTTGCCTCTCAGCTGCTGATATATTCACATGAGTAGATATTTTATAAATCTGTTATTTATGTGTTTTGTTATTAGTAACGTTATGGGATTGTCTTGTCTTTCTGTCTTGTCTTTCTGTGCCGTGTAATTTTGTTGTGGAGTTTGTCTGTAGAACATGTGCTGCCAGAACTCATCTCTTATTCAGTCCATCCAATAGAACGCTGTCTTCCCTAaactttcctctcctttcattcAAAATGAAATAAAGCAATCTGAAATTAA
>TU1349067
GACAGAGACAATAGGGCAAGTCAGGCTGACAGAGGTACTGACGAAGCAGACAGAAGCACCAGCAAAGTGATATTATTGTGCGCCGCTGTGCATATTGGCAACAAAGCGTTGAATCTGCACTATTCAGAGACACGATTTTGCACAGAAAATCAGACCAGTCCTGTAACGGTTTATCCTGCTATACAATTAAAGTTTCTGCTGAACGGAATGACAGCACCAGCTATTGCATGCAGCGCAATCTGAGAGGAACAACAGCAGTCACCAGATCCCTGTGCTCCAGGCATCTCTCCCAGGCAGAATGAGCTCCTCTCCCCATGGGTCCCACGGGTCTGGGTCCCGCACCTCCATCGACATCCTGGAGGAGCTGCAGCTCATTGCTGCCCAGAACCTGGAGAAGCTAGACATCAGCAAGTACTATGAGGTCATCAGGGAGCTGGGTAAGGGTACCTATGGGAAAGTGGACCTGGTCATCCACAAAATCAGGGGTGGGTCTTCCAGAGGCGGTGGCTAAGCGTTGTGTCCACCAGGTGGCCATCGCCCTGGACTACCTGCACTGTAAGAAGCTAGTCCACCGGGACATCAAGCCTGAGAATATCCTCATCTTTGACAAAGAGTGCCGTAAGGTCAAGCTGTCAGACTTCGGCATGACCCGGCGTGCCGGCTCCCCGGTGAAGCGTGTCAGCGGAACCATCCCGTACACGGCACCGGAGTTGTGCGACGCCTCGCAGCACGAAGGCTTCTGCGTGGACTACAGCACTGACGTGTGGGCCTTCGGTGTCCTCCTCTTCTGCATGCTCACCGGCAACTTCCCCTGGGAGAAGGCCCTGCCGTCGGACGCCTTCTACCAGGAGTTTGTGCGCTggcagcggcgccggacgggCACGGTGCCCTCTCAGTGGCGTCGCTTCACAGACGAGGGGCTGCGCATGTTCCGCAAGCTCCTGTCCATTGAGCAGGAGC
>TU1349068
GACAGAGACAATAGGGCAAGTCAGGCTGACAGAGGTACTGACGAAGCAGACAGAAGCACCAGCAAAGTGATATTATTGTGCGCCGCTGTGCATATTGGCAACAAAGCGTTGAATCTGCACTATTCAGAGACACGATTTTGCACAGAAAATCAGACCAGTCCTGTAACGGTTTATCCTGCTATACAATTAAAGTTTCTGCTGAACGGAATGACAGCACCAGCTATTGCATGCAGCGCAATCTGAGAGGAACAACAGCAGTCACCAGATCCCTGTGCTCCAGGCATCTCTCCCAGGCAGAATGAGCTCCTCTCCCCATGGGTCCCACGGGTCTGGGTCCCGCACCTCCATCGACATCCTGGAGGAGCTGCAGCTCATTGCTGCCCAGAACCTGGAGAAGCTAGACATCAGCAAGTACTATGAGGTCATCAGGGAGCTGGGCACTAAGATGGCTCTGAAGTTCTTGAGGAAGAAAACAACCAAACTGAAGAGCTTCTTAAGGGAGTACagcatctctctctacctgtctccctgcccCTTTATCATCAACATGTTCGGCATTGCCTTTGAGACAGACGACTACTACGTCTTCGCTCAGGAGTATGCCCTGGCAGGAGACCTCTTCGACATCATTCCCCCTCAGGTGGGTCTTCCAGAGGCGGTGGCTAAGCGTTGTGTCCACCAGGTGGCCATCGCCCTGGACTACCTGCACTGTAAGAAGCTAGTCCACCGGGACATCAAGCCTGAGAATATCCTCATCTTTGACAAAGAGTGCCGTAAGGTCAAGCTGTCAGACTTCGGCATGACCCGGCGTGCCGGCTCCCCGGTGAAGCGTGTCAGCGGAACCATCCCGTACACGGCACCGGAGTTGTGCGACGCCTCGCAGCACGAAGGCTTCTGCGTGGACTACAGCACTGACGTGTGGGCCTTCGGTGTCCTCCTCTTCTGCATGCTCACCGGCAACTTCCCCTGGGAGAAGGCCCTGCCGTCGGACGCCTTCTACCAGGAGTTTGTGCGCTggcagcggcgccggacgggCACGGTGCCCTCTCAGTGGCGTCGCTTCACAGACGAGGGGCTGCGCATGTTCCGCAAGCTCCTGTCCATTGAGCAGGAGC

Function

NR:

description
PREDICTED: serine/threonine-protein kinase SBK1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558361.2 False 4611 mRNA 0.43 4 47999581 48015949
TU1349067 False 960 TUCP 0.57 3 48003031 48015951
TU1349068 True 1115 TUCP 0.56 4 48003031 48015951

Neighbor

gene id symbol gene type direction distance location
LOC110486613 LOC106601452 coding downstream 45527 47948324 ~ 47954054 (-)
LOC110486611 LOC106601455 coding downstream 51445 47945361 ~ 47948136 (-)
LOC110486608 LOC106601451 coding downstream 65242 47933041 ~ 47934339 (-)
LOC110486610 reco coding downstream 77811 47919564 ~ 47921770 (-)
LOC110486606 LOC105899468 coding downstream 127727 47860198 ~ 47871854 (-)
LOC110486619 LOC106606937 coding upstream 25721 48041670 ~ 48072432 (-)
LOC110486622 LOC106601465 coding upstream 93508 48109457 ~ 48118413 (-)
LOC110486627 apol3 coding upstream 194804 48210753 ~ 48215730 (-)
LOC118938313 apol3 coding upstream 205209 48221158 ~ 48224723 (-)
LOC118936490 LOC106601559 coding upstream 233981 48249930 ~ 48252505 (-)
G1183001 NA non-coding downstream 7591 47988713 ~ 47991990 (-)
G1182997 NA non-coding downstream 29326 47969809 ~ 47970255 (-)
G1182996 NA non-coding downstream 29855 47968196 ~ 47969726 (-)
G1182993 NA non-coding downstream 36771 47962292 ~ 47962810 (-)
G1182992 NA non-coding downstream 37310 47961927 ~ 47962271 (-)
G1183020 NA non-coding upstream 18036 48033985 ~ 48034365 (-)
G1183021 NA non-coding upstream 19536 48035485 ~ 48035728 (-)
G1183047 NA non-coding upstream 103422 48119371 ~ 48136180 (-)
G1183089 NA non-coding upstream 173719 48189668 ~ 48189893 (-)
G1183098 LOC106606913 non-coding upstream 182253 48198202 ~ 48204974 (-)
LOC110486594 LOC106601485 other downstream 532895 47460436 ~ 47466735 (-)
LOC110486593 LOC106606954 other downstream 566184 47432406 ~ 47433949 (-)
LOC110486590 LOC105022923 other downstream 1084563 46827752 ~ 46915018 (-)
LOC110486586 ubald2 other downstream 1463936 46510585 ~ 46535713 (-)
G1179621 LOC106607015 other downstream 2466919 45531858 ~ 45532662 (-)
G1183013 NA other upstream 9152 48025101 ~ 48025776 (-)
G1183126 NA other upstream 243575 48259524 ~ 48259989 (-)
G1183190 NA other upstream 345649 48361598 ~ 48365100 (-)
G1183192 NA other upstream 348107 48364056 ~ 48376966 (-)
G1183196 NA other upstream 363318 48379267 ~ 48389718 (-)

Expression


Co-expression Network