LOC110486620 (LOC106601507)


Basic Information

Item Value
gene id LOC110486620
gene name LOC106601507
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 48093008 ~ 48102030 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036939759.1
ctGCAATgtgtaagtgtgtccaaacttttgactggtactgtatattttcagagtagcttccccaacactgctgACCTGTgaccaaatgtttttttatttttatgtatgtCACAGAACCAGAGCATCCAAGAAAAGTATCAGGGTCTTGGAATTgaactgttttggtttttgctttgagTCATTTCATTTTAGTTGGCTAGACATTACAACATCATAGGCTAGGCTAATTTATCTGTATTGAGGTCTATGTTAAACCTATAAGCCTATACACTGCAGTATGAATGTGCTTTACGTGACACCACTTAATTCTTGGTTGGCCTTTATGGAAATTCAAAATAATCACATTCTCCATGCAAGAATTACCCCAACAACACACAAAGATGGCGCCGTACTGTATGGTTGCCGTCTTTGCTATTTTGTGATTATTTTTCCTTGTTTTATAGTAAGCCTACTACttatattgattactgcattgttgggaaagagcttgcaagaaagccatttcactgttcttgtgcacgtgacaataaAACTTGACATTTGAACCTGATTATAACAGTTTAGAACTCCTCCCCCTACCTCTTGAACGTCACCTGTGTACGCGCCCAACACCTACAGGTAAAGGTGTATGCAAAGGAGAACTGCCGGGGAAGGAAGAATTAACGGTTGGACAAATTCCGGATACCGCTGCTATGGCCGAGTCTCAGCTTCTGTGCATGGACGAAGATCATGTCAACGAAAAGATACCCGAATCCAAAGCAGAATTCTATTATTGCGAGGAGCAGCGAGCCGCGCTCGAGCAACTATTGAAGAACGGTGATGGCGCGTTCAAGATGCGATTGAAAGAGGACAACGTCAGAGACTTTCTATCAGCCCGCGAGATTAAATGGATTCGAAAAACTTTTGATGAATATGATTCAGATAGTGAGTCCGAGAAGGGCGAATACGAAAAGGCTCAGGAGTCCAATGCAGACTCGGGGGTCCACTCCACATACTGGCCTCAGATGTCGGACACGGATGTCCCACCGCTTGACATCGGCTGGCCAGGCAGCACTAGTTTCTATAAAGGTGTCACTCGAGTATCCGTTCACACGCACCCACCCAAAAACAAGGGGCCCCATATAAAAGAGGTTGTCAGGAGACTCATTCAAGAATCTAACAAGGTAGTAGCCGTGGTCATGGACCACCTTACTGACCTGCAGATCCTTCAGGACCTATTGGACGCAGCACAGAGACGAGGGGTGGCTGTGTACATCATACTGGAGGCTCGTGGTATGCCCCACTTCCTGGATATGTGCACTCGTTTACAGATCACTGCTCTGCATCTACGGAACCTGCGTGTGCGAACGGTGAAAGGTTCTGGGCTGGCCCTGTCATTTGGCAGGCTGCCCGGCTCTCTGTGCTCCAAATACATGCTGGTGGACGGAGAAAAGGTTATGTTTGGCTCTTACAGCTTCACATGGAGCTCCTCTAGGATGGACAGGAACACCATCACAGTAATGTCTGGGCAGGTGGTGGACTTCTTCGACAATGACTTCAGGGAAATGTATGCTGTATCTGAGAATGTGGACCTTTACAAGGAGTTCCACATAACCAAGCCTCCCATGCCTGCGCCGGTACGGAAGGTGGTGGTCCCCAAGCCCCTGTTGATGTCCACCTCCCGTTTCCAGGTGTCTCTAGGGGACTCTCGGGGGCAGGCTGACCAGAGGGTGCCTGCACATAAATACCACAACCCTAAGTATTCTCTGGTGGTGGGGAACAGTCTCGGGCTCACTGGGTCCTTACAGGACCTCTCCACACTCAGAGACTCACTGGGCGGTGGACTCGAACGGAACGGACTGTCGACGCTACTCCatgccaaagggggcagtagtGTGGAACTGGACAAGGTCACTGCGAAGTCCCCCAGTTCTCctgtggaggatgaggaggatgggaAGGGAGGTTCGTTGAAGCGCCAGGTCTTAGATGGAAAGAAACAACGCAGTTCTTTCAGGCTCTTCCTGAAAGGCAGAGGATCCAATCACAACAGTGAGACTATAGAGGAGGATGGGGCCACTCCTTCAAACCCCTCTTCCACCCGCCCAAACCCCTCCCCTAGCCGCCCAACCCCCACCCCTAGCCACCCAACTCCCTCCCCTAGCCGCCCAACCCCCACCCCTAGCCACCCAACTCCCTCCCCTAGCCGCCCAACCCCCTCCCTTGCCCATCGAACCCCCTCCCCTACCCACCCAACACTCTCCCCAACCCGCCCAAACCCCTCCCCTACCCACTTAACACCCTCCCCGACCCGCCAAAACCCCTCCTCTACCCACTCAACACCCTCCCCTACCCACCCAACCCTCTCCCCTACCCGCCCAAACCCCTCCCCTACCCACTCAACACCCTCACCTACCTGCCCAAACCCCTCCTCTACCCACTCAACACCCTCCCCTACCCGCCCAAACCCCTCCCCTACCCACTCAACACCCTCCCCTACCCGCCCAAACCCCTCCTCTACCCACtcaaaaccctcccctacccgCCCAAACCCCTCCTCTACCCGCAAAGTCTCAGAGACAAATAGCATTGCCACTGCGCACTCATTTGAGATTGTAGAGAAACCGTCCCTGTTGAAATTTAAGAACAAAAAGCCTTCAAAACTGCCTCAAAGAAGTATGTCTCTAATGACCCTCAACAAAGGAGAGGATGACGGAAAGGGACACAAGAAGCCTTCCAAGAGGAACTGCATTCAGTcctga
>TU1348103
cctgaaatgtggcaaaaggtcgcaaagttcaagggggccgaatactttcgcaaggcactgtatttaagtattttttgtTGTAGTTGAGAAAGTATTTTCAAAAAATTACTCTAATGATCTGACACTGAGAACTACATTCCTGACCTGCAGTGTTGGGTAATAGTGAACTACATGTAattcaactagtaatttaactacattttggGGTAGCTcagtggtagttgaactaaattcaatctaggtagtgttttcagtagttatgAATTTTTTTTGCAATGTAACTACTGGAAATACACAGTACTTTTTATTTCAAATAAAGTAAAATATGAGTGAAGGAGGCAATCGTTTCCATTCTTTTTCAGCATCAGACTTGCCTAATCCAATTACTTCAGCGTTACATTGCAAAAAAAAAGgaattaactactgaaaacactacctagatttgaatttagtcttgcaatttgtagtctatgacatttcagatttacatatgataatttttCACAAACAAGTTTTGATGTAGTAAACTACgtttcaaagtaactttagttaagtaaactatattttccTTAAGGGAATCattagtgtagcttaacttcttccagaGTGAAGTAATTAGTGGCTTGGTAAACtagcctacagtaccagtcaaacatttggacacacctactcattcaaggtttttctttattttgtactattttctacattgtagaatactagtgaagacataaaaactatgaaatatcacatatggaatcatgtagtatgcaaaaaaaagtttattcaaagtagccaccctttgcctagatgacagctttgcacactcttggcattctctcaaccagcttcacctggaatgcttttccaacagtcttgaaggagttcccacatatgctgagcacttgttggctgcttttccttcactctgaaaCGTTAaacgttcttgacattttccggattgactgaccttcatgtcatagtaatgatggacagtcatttctctttgtttatttgagctgttcatgtcataatatggacttggtcttttaccaaataaggctatcttctgtataccacccctgccttgtcacaacacaactgattggctcaaacacattgagaaggaaagaaattccacaaattaactttttacaaggcacacctgttaagtgaaatgcattccaggtgactacctcatgaagctggttgagagaatgcaaagtgtgcaaacctgtcatcaaggcaaagggtggctactttgaagaatctcaaatctcaaatatatttttattaatttaacacttttttggttactacacgattccctttgtgttatgtcatagttttgatatcttcactattattctacaatgtagaaaatagtaaaataaattaaaaccctGCAATgtgtaagtgtgtccaaacttttgactggtactgtatattttcagagtagcttccccaacactgctgACCTGTgaccaaatgtttttttatttttatgtatgtCACAGAACCAGAGCATCCAAGAAAAGTATCAGGGTCTTGGAATTgaactgttttggtttttgctttgagTCATTTCATTTTAGTTGGCTAGACATTACAACATCATAGGCTAGGCTAATTTATCTGTATTGAGGTCTATGTTAAACCTATAAGCCTATACACTGCAGTATGAATGTGCTTTACGTGACACCACTTAATTCTTGGTTGGCCTTTATGGAAATTCAAAATAATCACATTCTCCATGCAAGAATTACCCCAACAACACACAAAGATGGCGCCGTACTGTATGGTTGCCGTCTTTGCTATTTTGTGATTATTTTTCCTTGTTTTATAGTAAGCCTACTACttatattgattactgcattgttgggaaagagcttgcaagaaagccatttcactgttcttgtgcacgtga

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036939759.1 False 2741 mRNA 0.51 5 48094411 48102030
TU1348103 True 1927 lncRNA 0.35 1 48093008 48094934

Neighbor

gene id symbol gene type direction distance location
LOC110486621 grap2 coding upstream 3095 48075981 ~ 48091316 (+)
LOC110487551 LOC106606928 coding upstream 56866 48033192 ~ 48037545 (+)
LOC110486616 LOC106601459 coding upstream 102404 47984789 ~ 47992007 (+)
LOC110486615 NA coding upstream 109921 47962014 ~ 47984490 (+)
LOC110486612 LOC106601453 coding upstream 133959 47952948 ~ 47960452 (+)
rac2 LOC106601467 coding downstream 17286 48119316 ~ 48136319 (+)
sstr3 LOC106601468 coding downstream 46369 48148399 ~ 48166866 (+)
LOC110486624 LOC106606913 coding downstream 95484 48197514 ~ 48204821 (+)
LOC110486626 LOC106606914 coding downstream 117949 48219979 ~ 48231937 (+)
LOC110485200 cacng2 coding downstream 177812 48279842 ~ 48360869 (+)
G1182110 NA non-coding upstream 62007 48032178 ~ 48032404 (+)
G1182107 NA non-coding upstream 68637 48025184 ~ 48025774 (+)
G1182094 LOC106601460 non-coding upstream 90907 47999598 ~ 48003504 (+)
LOC110486605 tmem220 non-coding upstream 261611 47830848 ~ 47832931 (+)
G1181941 NA non-coding upstream 362024 47732130 ~ 47732387 (+)
G1182130 NA non-coding downstream 5746 48107776 ~ 48108141 (+)
G1182182 NA non-coding downstream 65035 48167065 ~ 48168051 (+)
G1182196 NA non-coding downstream 85809 48187839 ~ 48188082 (+)
G1182204 NA non-coding downstream 94778 48196808 ~ 48197030 (+)
G1182240 NA non-coding downstream 168580 48270610 ~ 48270827 (+)
G1181955 NA other upstream 351347 47742361 ~ 47743064 (+)
G1181636 NA other upstream 544863 47549279 ~ 47549548 (+)
tmem100a LOC106606948 other upstream 624399 47468012 ~ 47471205 (+)
G1181472 NA other upstream 719934 47374163 ~ 47374477 (+)
LOC110485193 LOC106601421 other upstream 1758133 46302751 ~ 46336386 (+)
G1182153 NA other downstream 17583 48119613 ~ 48122575 (+)
G1182354 LOC106601550 other downstream 453984 48556014 ~ 48561624 (+)
G1182541 NA other downstream 844719 48946749 ~ 48947969 (+)
G1182555 NA other downstream 875970 48978000 ~ 48981403 (+)
G1182595 NA other downstream 961755 49063785 ~ 49065142 (+)

Expression


Co-expression Network