sstr3 (LOC106601468)


Basic Information

Item Value
gene id sstr3
gene name LOC106601468
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 48148399 ~ 48166866 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558369.2
GGAGTAGCCTAATGTAATGTTGGTGGCGTTCAGTGCAGGCTACCTCTCGGACTGTGAACAGTCAGGTGGAAGTGCGCGTAAAATAAAGTTCATtccgtttttatttatttattttatatcgGACACAGTAAAGAAAAACAATTGTGTACCCTATTATTTGCAAGTAACATTTTTGGGGGTAATTTCTCAAGAGAAAGCGCAACTTCACCATTATTTAATCACCCAGCTGTGGATACTTACCGAAAAAACGTGTTTGCAAAAGTGAAGGGACAGATGGGTGGGagttgagagagacagacagacatccccctactcctccatctctcctgcctGGACTTCTGCTCACCGCCCCCTCAGAGATGGCAGAGGACATGTGGGAGAACAGAACAGTCCCCAGCCCTTACCCCCACCTCCCCCTGTCTTTGCTACTATGCAACGACACCCTCCTCAATGACACCCTCCTCAACGACACTCTATTCAACTGTATCAACTCCACCAACATTCCAGAGATGCCATTAGGACCCAGTGTAGCAGGGGTCCTCATCCCACTCATCTACATCATCGTCTGTGTCATCGGCCTTGGCGGGAACAGCCTGGTCATCCACATTGTGCTGCACTACTCCAAGACGGAGTCTGTGACTAACATCTACATCCTGAACCTGGCCATCGCTGATGAGCTCTTCATGCTGGGCCTGCCCTTCCTGGCTGTCCAGAACACCCTCCAGTTTTGGCCCTTTGGCTCCTTTATGTGCCGCCTGGTCATGACCGTGGACTCCATCAACCAGTTCACCTCCATCTTCTGCCTAACTGTCATGAGCATTGACCGCTACCTGGCAGTGGTCCATCCCATACGCTCCTCCAAGTGGCGGCGGCCCCAGGTGGCCAAGGTGGTCAACGGCACAGTATGGGCCATCTCCTTCCTGGTGGTCCTACCTGTGGTAATCTTCGCCAACGTCCACAAGACGGGCGGCACCTGCAATATCTCCTGGCCTCGGCCGGCCGACATTTGGCGGGCGGCTTTTATCATCTACACGTCCACAGTGGGTTTCTTCTGCCCACTCCTCATCATCTGCCTCTGCTACCTGCTCATCGTCTTCAAGATTCGCAGCTCTGGCAAGAAGGTCCATGCCACGTCCACCAAGCGCAGGAAATCGGAGCGCAAGGTGACGCGCATGGTGGTGATCGTGGTGGCCGTGTTTGTCTTCTGCTGGTTGCCCTTCTACGCCCTCAACATCCTCAACCTGCTGGTGTCTCTGCCATCAGAGTACCCGGGCCTCTACTACTTTGTTGTGGTAATGGGCTACGCCAACAGCTGCGCCAACCCCATCGTCTACGGCTTCCTGTCAGAAAACTTTAAGCGGGGCTTCCGCAAGGCCCTGTGTCGCTCCTCACGCAAGGTGGAGAGCCACGACCTGACAGAGCGCCAGCAgcagcaggaagagagagggagggtgctgaAGCCCCGGGAGAGCTTGAGGAGGGTCGTacgagatgaggaggaggaagaggatgatgacGACAGGGAGGACGTCACAGAGATGACGGAGATCTGTAGGATCGCCCAGAATGGGAACGGACATCCCGAGAGTTCCCTGGCCCTGTTAACACCCAAGGCGCCAGCTCCAGGGGCATCTGAGCATGTTGCATCCCCAGAAAGGAAAGCCAAAGCTGGTGACATTGGTGGGAAAGGCCCAAACTTGGGGCCTCCAGCATCCCTGCATAATGGACACACCAATGGGAGTGTCAAACCACTGCCAGAGGAGCCAGTGGAGAAGAACTCCTCACTGGAGATAAGCTACCTATAATGTAAAATAACTGTCTCTGAAGTCAGTTACCTGATGGAACTTGCATTAATATTTTGTGGTATTCAAGTAATGTCTATTTAAATGTACAGCGCTATACACATATAGAGAAGAGAAGCACTCTG

Function

NR:

description
somatostatin receptor type 5-like

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0038170 somatostatin signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004994 somatostatin receptor activity molecular_function

KEGG:

id description
K04221 SSTR5; somatostatin receptor 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558369.2 True 1927 mRNA 0.53 2 48148399 48166866

Neighbor

gene id symbol gene type direction distance location
rac2 LOC106601467 coding upstream 12080 48119316 ~ 48136319 (+)
LOC110486620 LOC106601507 coding upstream 46369 48093008 ~ 48102030 (+)
LOC110486621 grap2 coding upstream 57083 48075981 ~ 48091316 (+)
LOC110487551 LOC106606928 coding upstream 110854 48033192 ~ 48037545 (+)
LOC110486616 LOC106601459 coding upstream 156392 47984789 ~ 47992007 (+)
LOC110486624 LOC106606913 coding downstream 30648 48197514 ~ 48204821 (+)
LOC110486626 LOC106606914 coding downstream 53113 48219979 ~ 48231937 (+)
LOC110485200 cacng2 coding downstream 112976 48279842 ~ 48360869 (+)
LOC110486632 LOC106601556 coding downstream 308938 48475804 ~ 48486385 (+)
LOC110486639 rund1 coding downstream 321579 48488445 ~ 48493519 (+)
G1182130 NA non-coding upstream 40258 48107776 ~ 48108141 (+)
G1182110 NA non-coding upstream 115995 48032178 ~ 48032404 (+)
G1182107 NA non-coding upstream 122625 48025184 ~ 48025774 (+)
G1182094 LOC106601460 non-coding upstream 144895 47999598 ~ 48003504 (+)
G1182182 NA non-coding downstream 199 48167065 ~ 48168051 (+)
G1182196 NA non-coding downstream 20973 48187839 ~ 48188082 (+)
G1182204 NA non-coding downstream 29942 48196808 ~ 48197030 (+)
G1182240 NA non-coding downstream 103744 48270610 ~ 48270827 (+)
G1182275 NA non-coding downstream 172840 48339706 ~ 48340100 (+)
G1182153 NA other upstream 25824 48119613 ~ 48122575 (+)
G1181955 NA other upstream 405335 47742361 ~ 47743064 (+)
G1181636 NA other upstream 598851 47549279 ~ 47549548 (+)
tmem100a LOC106606948 other upstream 678387 47468012 ~ 47471205 (+)
G1181472 NA other upstream 773922 47374163 ~ 47374477 (+)
G1182354 LOC106601550 other downstream 389148 48556014 ~ 48561624 (+)
G1182541 NA other downstream 779883 48946749 ~ 48947969 (+)
G1182555 NA other downstream 811134 48978000 ~ 48981403 (+)
G1182595 NA other downstream 896919 49063785 ~ 49065142 (+)
G1182629 NA other downstream 948109 49114975 ~ 49118697 (+)

Expression


Co-expression Network