LOC110486624 (LOC106606913)


Basic Information

Item Value
gene id LOC110486624
gene name LOC106606913
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 48197514 ~ 48204821 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558371.2
GGCCAAAGTAGTGTGAAGGGTGGTGGGTTTGTTGGGTATAGTGGTGTATATCTAGGGGTAGATGGTggtgcaataaaaaaaaaatctcccaATTTCACTTTTTTTGAACAAAATGTGCAATTCACACTCCGACCTGTGAAGGGCAGCAATATGCAACAAAGCTCATAGTCTGCCGGAAAACAACTCTTTACAGTACTTTTCCACCTCCTTTTTCTACGGCGCTTTTAAGAAGAAAACTGTGACTCGGCTGATTGACCGAATAAAAGCTGCCGTTTGGTCGTCACAATCTCAAAGACCATGGCGAAGTTCCATGCCCCTGAGATCCAGGACAATCCCTCTGGATGGGGTCCCTGTGCTGTCCCTGAGAAGTTTAAGGACATGCCCTACCAGCCCTTTAGCAAAGGAGACCGTCTGGGAAAGGTGGCTGATTGGACAGGAGCAACCTACCAGGACAAGAGATACACAAACAAGTATTCATCTCAGTTTGGGGGTGGTAGTCAGTATGCCTACTTCCATGAGGAGGACGAGACGAGCTTCCAGCTGGTGGACACTGCCAAGACGCAGAAGACTGCCTACCAGAGGAACCGCATGAGGTTTGCACAGAGGAATCTGCGCAGGGACAAGGACCGCAGGAACCTGACCCAGTTCAATATGCAGACCCTCCCGAAGAGTGCCAAGCAGAAGGAGAGGGATCGCATGCGCCTACAGAAAAagttccagaagcagtttggcgTCCGTCAGAAGTGGGACCAGAAATCCCAGTTGAAACCCAGAGACTCGTCGGTGGAGGTCCGGAGTGACTGGGAGGTGAAGGAGGAGATGGACTTCCCCAGGCTGATGAAGATGAGATACATGGAGGTGGAGGACCCCACTGACATTGAGTGCTGTGGTGCGTTGGAGTACTACGACAAGGCCTTCGACCGTGTCACCACTCGCAACGAGAAGCCTCTCAAGAGCATCAAGAGGATCTttcacacagtcaccaccaccgACGACCCTGTCATCCGCAAGTTGGCTAAGACCCAGGGCAATGTGTTTGCCACCGATGCCATCCTGGCCACCCTGATGTGCTGCACGCGCTCAGTCAACTCCTGGGACATTATCGTGCAGAGAGTGGGCAACAAGCTCTTCTTTGACAAGAGAGACAACTCTGATTTTGATCTGTTGACGGTGAGTGAGACTGCCAACGAGCCACCACAGGATGAGGGCAACTCCTTCAACTCGCCCCGTAACCTGGCCATGGAGGCTACCTACATCAACCATAACTTCAGCCAGCAGTGTCTGCGCATGGGCGGGGAGAGGCACAAGttccctaaccccaacccatTTGTAGAGGAGGACATAGACAAGAGTGAGGTGGCCTCTGTTGCCTACAGGTACCGCCGCTGGAAGCTGGGGGAGGACATTGACCTGATTGTACGCTGTGAGCACGATGGAGTGATGACCGGGGCCAACGGAGAGGTGTCCTTCATCAACGTCAAGACCCTCAACGAGTGGGACTCCCGGCACTGTAATGGAGTGGACTGGCGTCAGAAGCTGGACTCtcagaggggagctgttctggCCACCGAGCTGAAGAACAACAGCTACAAACTGGCCCGCTGGACCTGCTGTGCCATGCTGGCTGGCTCAGAGTACCTCAAGCTAGGGTACGTGTCTCGTTATCACGCGAAGGACTCTGCGCGCCACGTGGTCCTGGGCACCCAGCAGTTCCAGCCCACTGAGTTTGCCAGCCAGATCAACTTGAGCATGGAGAACGCCTGGGGCATCCTACGCTGCGTCATCGACATCTGCCGCAAGCTGGAGGAGGGCAAGTACCTCATCCTCAAGGACCCCAACAAGCAAGTGATTCGCGTGTATAGCTTGCCTGACGGAACCTTCAGCTCAGATGAAGATGAggaagaagatgatgatgatgatgaagaggatgaggaggaggaagATGAACAAGAACCCTAAGGTGTGGCAATTGCACTAGTTACCAGGTGGCCTGCATCACACAGAAAATACTTCCTCGTTACATTCAAATAAAGATCTGAGAAACTG

Function

NR:

description
eukaryotic translation initiation factor 3 subunit D isoform X2

GO:

id name namespace
GO:0001731 formation of translation preinitiation complex biological_process
GO:0006446 regulation of translational initiation biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03251 EIF3D; translation initiation factor 3 subunit D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558371.2 True 2046 mRNA 0.53 16 48197514 48204821

Neighbor

gene id symbol gene type direction distance location
sstr3 LOC106601468 coding upstream 30648 48148399 ~ 48166866 (+)
rac2 LOC106601467 coding upstream 61195 48119316 ~ 48136319 (+)
LOC110486620 LOC106601507 coding upstream 95484 48093008 ~ 48102030 (+)
LOC110486621 grap2 coding upstream 106198 48075981 ~ 48091316 (+)
LOC110487551 LOC106606928 coding upstream 159969 48033192 ~ 48037545 (+)
LOC110486626 LOC106606914 coding downstream 15158 48219979 ~ 48231937 (+)
LOC110485200 cacng2 coding downstream 75021 48279842 ~ 48360869 (+)
LOC110486632 LOC106601556 coding downstream 270983 48475804 ~ 48486385 (+)
LOC110486639 rund1 coding downstream 283624 48488445 ~ 48493519 (+)
LOC110486640 LOC106601555 coding downstream 291792 48496613 ~ 48498675 (+)
G1182204 NA non-coding upstream 484 48196808 ~ 48197030 (+)
G1182196 NA non-coding upstream 9432 48187839 ~ 48188082 (+)
G1182182 NA non-coding upstream 29463 48167065 ~ 48168051 (+)
G1182130 NA non-coding upstream 89373 48107776 ~ 48108141 (+)
G1182240 NA non-coding downstream 65789 48270610 ~ 48270827 (+)
G1182275 NA non-coding downstream 134885 48339706 ~ 48340100 (+)
G1182308 rl3 non-coding downstream 216509 48421330 ~ 48445610 (+)
G1182331 NA non-coding downstream 249470 48454291 ~ 48462154 (+)
G1182318 NA non-coding downstream 260059 48464880 ~ 48467408 (+)
G1182153 NA other upstream 74939 48119613 ~ 48122575 (+)
G1181955 NA other upstream 454450 47742361 ~ 47743064 (+)
G1181636 NA other upstream 647966 47549279 ~ 47549548 (+)
tmem100a LOC106606948 other upstream 727502 47468012 ~ 47471205 (+)
G1181472 NA other upstream 823037 47374163 ~ 47374477 (+)
G1182354 LOC106601550 other downstream 351193 48556014 ~ 48561624 (+)
G1182541 NA other downstream 741928 48946749 ~ 48947969 (+)
G1182555 NA other downstream 773179 48978000 ~ 48981403 (+)
G1182595 NA other downstream 858964 49063785 ~ 49065142 (+)
G1182629 NA other downstream 910154 49114975 ~ 49118697 (+)

Expression


Co-expression Network