LOC118938313 (apol3)


Basic Information

Item Value
gene id LOC118938313
gene name apol3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 48221158 ~ 48224723 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941339.1
AAGGGCTTTTAACCCGCCACTGTTTCAGGTTAAAATTGAGGGATGGAATTGGAGATTGTAATTCacagacagacctatggatgcaaggactgaccattcatgatatcaaaattatagttttaactatgTATTAAaggtatagtgtttgtttacgttTACTTTGTTTGTAAACATTAGAGTAAAACacgcttatattttgggttttgATGGGGTACAAGAGTTGAACTAAACTAATGAGGCagtaagttatattcttcaagagaTAATGGGTACATAAGGTTATCGTTACTTTATAAATCCACCGTAGAAGTGCTCGGAGCAGGTGCAATTTGCAGTGCAAGAACAAGCAAACGTATAACACCTGGCTTGTCATGCTGAATTCAAATTTGGGCTGTACAACATGCAAAAAGGTAGGGTGTTTGGGTCTAGAAACGACTAGAGGGATAATACTAGCTATCAAAAGTGTTGGTGGAATATACAGTatcatcctcttcctctgaagagagCCCTCAGAAAAAAGGTTTCTGAACATGCCCGAACCAAGGCGCATTTGTTGGTAGCAAGCCTTGCAGACACGGCTAAAGACGACACTATTAACACTCAAAATGGAAAAAAATAGACTATACAGCCAGAGTCTTCCGAACAGCTTTAGAACGAGACTAAACGTCATAGGCACAGGCTCGTTCATGGTTTTGAACAATAAATTGACTGTCAGGAGATACATGGACTTGACATGGGGAGAGTCATTGTGGGAGGTTTTGAAAACTACGTTCTATTGGACATGCCTTGGGGACAAGGCAACACTGTTCAGTAACGATATCAACCAAACCAGGAAATGTCCAAACACAGGGAGAGCGTCATGTCACGAGTTAACAAGGGAGCTCTTGGGCCAGTACATCTCTGACACCCTCAGCAACGTTCACACAGTGAGGGAGTTCTGTGACAGGCATTCCAAATGGGCCCTTCAGAGGAAGACAGAACTGGAAATGATGAGGGACATCAAGCAGAGGGCAGACAGAATTGACCTTAAGTTCGACCATGTCCGTAACTCAGCGACCAAGGCCAAGGCGTTTGGGGAGTTCGTATGGAGCGGTCTGACCCAGGGGACTGCAGACAGTAGGCGTGAGGAGCTGGAGAAGGAGCTGGGGGCTGTACTAAAGGACACTCTGGGAGGCCTGGAGAAGCTGGATTACTTCCTGGATGCTGTGGAGTGTCTGGCGGTCacctgtctgttggtgtttgaGGAGAACAGGTTCTTCTGTCTGCCTCAGGGGACGAGCCCTGCCAGTGTTCAGGCTGTCATCACTGCTGCCAGAATATCCTGCCCTCTCCTCATCTACTTTAAGAGGGATGCTAAGGCCTTCTTTATGCCCAGCCTCCTCAATGTAGAGGTGCTGGCCCTCCAACTGGACAGATACATAGAAATCAGCCAGCAGCTCTGTAAGAGGATGGACATAGTGTGGCATCCTTCAGCCGCCCACCCTTCACCGTGAACAGCACCACGGTATGCCCCCAAGCCCgctcccccaacagctccacatgCTCCTCGGCTGCCTGCCGCTCCCGTTTggtaaaggagaaggagaggggcacCAC
>XM_036941341.1
CTATTAACACTCAAAATGGAAAAAAATAGACTATACAGCCAGAGTCTTCCGAACAGCTTTAGAACGAGACTAAACGTCATAGGCACAGGCTCGTTCATGGTTTTGAACAATAAATTGACTGTCAGGAGATACATGGACTTGACATGGGGAGAGTCATTGTGGGAGGTTTTGAAAACTACGTTCTATTGGACATGCCTTGGGGACAAGGCAACACTGTTCAGTAACGATATCAACCAAACCAGGAAATGTCCAAACACAGGGAGAGCGTCATGTCACGATCAGAGTTAACAAGGGAGCTCTTGGGCCAGTACATCTCTGACACCCTCAGCAACGTTCACACAGTGAGGGAGTTCTGTGACAGGCATTCCAAATGGGCCCTTCAGAGGAAGACAGAACTGGAAATGATGAGGGACATCAAGCAGAGGGCAGACAGAATTGACCTTAAGTTCGACCATGTCCGTAACTCAGCGACCAAGGCCAAGGCGTTTGGGGAGTTCGTATGGAGCGGTCTGACCCAGGGGACTGCAGACAGTAGGCGTGAGGAGCTGGAGAAGGAGCTGGGGGCTGTACTAAAGGACACTCTGGGAGGCCTGGAGAAGCTGGATTACTTCCTGGATGCTGTGGAGTGTCTGGCGGTCacctgtctgttggtgtttgaGGAGAACAGGTTCTTCTGTCTGCCTCAGGGGACGAGCCCTGCCAGTGTTCAGGCTGTCATCACTGCTGCCAGAATATCCTGCCCTCTCCTCATCTACTTTAAGAGGGATGCTAAGGCCTTCTTTATGCCCAGCCTCCTCAATGTAGAGGTGCTGGCCCTCCAACTGGACAGATACATAGAAATCAGCCAGCAGCTCTGTAAGAGGATGGACATAGTTAGCTCCATCAGTCAAATGCTGTTTTGGAAAAAGAAGAATgacatccctgctctcctccacctcctcctctaagGTGGCATCCTTCAGCCGCCCACCCTTCACCGTGAACAGCACCACGGTATGCCCCCAAG
>XM_036941338.1
GGGCTTTTAACCCGCCACTGTTTCAGGTTAAAATTGAGGGATGGAATTGGAGATTGTAATTCacagacagacctatggatgcaaggactgaccattcatgatatcaaaattatagttttaactatgTATTAAaggtatagtgtttgtttacgttTACTTTGTTTGTAAACATTAGAGTAAAACacgcttatattttgggttttgATGGGGTACAAGAGTTGAACTAAACTAATGAGGCagtaagttatattcttcaagagaTAATGGGTACATAAGGTTATCGTTACTTTATAAATCCACCGTAGAAGTGCTCGGAGCAGGTGCAATTTGCAGTGCAAGAACAAGCAAACGTATAACACCTGGCTTGTCATGCTGAATTCAAATTTGGGCTGTACAACATGCAAAAAGGTAGGGTGTTTGGGTCTAGAAACGACTAGAGGGATAATACTAGCTATCAAAAGTGTTGGTGGAATATACAGTatcatcctcttcctctgaagagagCCCTCAGAAAAAAGGTTTCTGAACATGCCCGAACCAAGGCGCATTTGTTGGTAGCAAGCCTTGCAGACACGGCTAAAGACGACACTATTAACACTCAAAATGGAAAAAAATAGACTATACAGCCAGAGTCTTCCGAACAGCTTTAGAACGAGACTAAACGTCATAGGCACAGGCTCGTTCATGGTTTTGAACAATAAATTGACTGTCAGGAGATACATGGACTTGACATGGGGAGAGTCATTGTGGGAGGTTTTGAAAACTACGTTCTATTGGACATGCCTTGGGGACAAGGCAACACTGTTCAGTAACGATATCAACCAAACCAGGAAATGTCCAAACACAGGGAGAGCGTCATGTCACGAGTTAACAAGGGAGCTCTTGGGCCAGTACATCTCTGACACCCTCAGCAACGTTCACACAGTGAGGGAGTTCTGTGACAGGCATTCCAAATGGGCCCTTCAGAGGAAGACAGAACTGGAAATGATGAGGGACATCAAGCAGAGGGCAGACAGAATTGACCTTAAGTTCGACCATGTCCGTAACTCAGCGACCAAGGCCAAGGCGTTTGGGGAGTTCGTATGGAGCGGTCTGACCCAGGGGACTGCAGACAGTAGGCGTGAGGAGCTGGAGAAGGAGCTGGGGGCTGTACTAAAGGACACTCTGGGAGGCCTGGAGAAGCTGGATTACTTCCTGGATGCTGTGGAGTGTCTGGCGGTCacctgtctgttggtgtttgaGGAGAACAGGTTCTTCTGTCTGCCTCAGGGGACGAGCCCTGCCAGTGTTCAGGCTGTCATCACTGCTGCCAGAATATCCTGCCCTCTCCTCATCTACTTTAAGAGGGATGCTAAGGCCTTCTTTATGCCCAGCCTCCTCAATGTAGAGGTGCTGGCCCTCCAACTGGACAGATACATAGAAATCAGCCAGCAGCTCTGTAAGAGGATGGACATAGTTAGCTCCATCAGTCAAATGCTGTTTTGGAAAAAGAAGAATgacatccctgctctcctccacctcctcctctaagGTGGCATCCTTCAGCCGCCCACCCTTCACCGTGAACAGCACCACGGTATGCCCCCAAG
>XM_036941340.1
gtcgcaaagttcaagggggccgaatactttcgcaaggcactgtatgtctgaaATGGTTACTACATGTGTCAGATACCCTCTGAAGTCGCTAGGATTTTACAGAACATTTAATTTAGTCTCGCCATCCTTCCAAATAAAACTAAAAAAATAGTTTACATGTAAGTAAATAATCCACAATATTGTTCCACGCTACAGATTTGTTTACTAATGGATTGCTAAAGGATGCTCTGTTTTGGGCGTTTCTTTCTCGCCATTCAAAGGAGTGGTGGTGACGTGTCCAAGCGTTCTTATCGTAGCTCAATGTTGAGTTTGGTGAAGTAAGGGAAACGAAACTGAGAAGACAACATTCCAGTGTAGGGAGACTGTAGGGAACAGCATTCACCCTCTTTGTCAAGTTCTATTGGACATGCCTTGGGGACAAGGCAACACTGTTCAGTAACGATATCAACCAAACCAGGAAATGTCCAAACACAGGGAGAGCGTCATGTCACGATCAGAGTTAACAAGGGAGCTCTTGGGCCAGTACATCTCTGACACCCTCAGCAACGTTCACACAGTGAGGGAGTTCTGTGACAGGCATTCCAAATGGGCCCTTCAGAGGAAGACAGAACTGGAAATGATGAGGGACATCAAGCAGAGGGCAGACAGAATTGACCTTAAGTTCGACCATGTCCGTAACTCAGCGACCAAGGCCAAGGCGTTTGGGGAGTTCGTATGGAGCGGTCTGACCCAGGGGACTGCAGACAGTAGGCGTGAGGAGCTGGAGAAGGAGCTGGGGGCTGTACTAAAGGACACTCTGGGAGGCCTGGAGAAGCTGGATTACTTCCTGGATGCTGTGGAGTGTCTGGCGGTCacctgtctgttggtgtttgaGGAGAACAGGTTCTTCTGTCTGCCTCAGGGGACGAGCCCTGCCAGTGTTCAGGCTGTCATCACTGCTGCCAGAATATCCTGCCCTCTCCTCATCTACTTTAAGAGGGATGCTAAGGCCTTCTTTATGCCCAGCCTCCTCAATGTAGAGGTGCTGGCCCTCCAACTGGACAGATACATAGAAATCAGCCAGCAGCTCTGTAAGAGGATGGACATAGTTAGCTCCATCAGTCAAATGCTGTTTTGGAAAAAGAAGAATgacatccctgctctcctccacctcctcctctaagGTGGCATCCTTCAGCCGCCCACCCTTCACCGTGAACAGCACCACGGTATGCCCCCAAG

Function

symbol description
apol3 Predicted to enable lipid binding activity. Involved in positive regulation of I-kappaB kinase/NF-kappaB signaling. Located in membrane.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0042157 lipoprotein metabolic process biological_process
GO:0006869 lipid transport biological_process
GO:0005576 extracellular region cellular_component
GO:0008289 lipid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941339.1 False 1596 mRNA 0.47 4 48221158 48224270
XM_036941341.1 False 1006 mRNA 0.51 4 48221237 48223680
XM_036941338.1 False 1589 mRNA 0.46 4 48221237 48224268
XM_036941340.1 True 1221 mRNA 0.49 4 48221237 48224723

Neighbor

gene id symbol gene type direction distance location
LOC110486627 apol3 coding downstream 5428 48210753 ~ 48215730 (-)
LOC110486622 LOC106601465 coding downstream 102745 48109457 ~ 48118413 (-)
LOC110486619 LOC106606937 coding downstream 148726 48041670 ~ 48072432 (-)
LOC110486618 LOC106606909 coding downstream 205209 47999581 ~ 48015951 (-)
LOC110486613 LOC106601452 coding downstream 267104 47948324 ~ 47954054 (-)
LOC118936490 LOC106601559 coding upstream 25207 48249930 ~ 48252505 (-)
LOC110486633 rl3 coding upstream 196928 48421651 ~ 48426322 (-)
LOC118938618 NA coding upstream 197144 48421867 ~ 48421998 (-)
LOC118938629 NA coding upstream 198277 48423000 ~ 48423079 (-)
LOC118938627 NA coding upstream 199517 48424240 ~ 48424333 (-)
G1183104 NA non-coding downstream 11136 48208266 ~ 48210022 (-)
G1183098 LOC106606913 non-coding downstream 16184 48198202 ~ 48204974 (-)
G1183089 NA non-coding downstream 31265 48189668 ~ 48189893 (-)
G1183047 NA non-coding downstream 84978 48119371 ~ 48136180 (-)
G1183021 NA non-coding downstream 185430 48035485 ~ 48035728 (-)
G1183122 NA non-coding upstream 30727 48255450 ~ 48255662 (-)
G1183135 NA non-coding upstream 46002 48270725 ~ 48271035 (-)
G1183142 cacng2 non-coding upstream 55297 48280020 ~ 48281903 (-)
G1183190 NA non-coding upstream 136875 48361598 ~ 48365100 (-)
G1183194 NA non-coding upstream 143338 48368061 ~ 48430085 (-)
G1183013 NA other downstream 195382 48025101 ~ 48025776 (-)
LOC110486594 LOC106601485 other downstream 754472 47460436 ~ 47466735 (-)
LOC110486593 LOC106606954 other downstream 787761 47432406 ~ 47433949 (-)
LOC110486590 LOC105022923 other downstream 1306140 46827752 ~ 46915018 (-)
G1183126 NA other upstream 34801 48259524 ~ 48259989 (-)
G1183192 NA other upstream 139333 48364056 ~ 48376966 (-)
G1183196 NA other upstream 154544 48379267 ~ 48389718 (-)
G1183225 NA other upstream 211103 48435826 ~ 48470983 (-)

Expression


Co-expression Network