LOC110485200 (cacng2)


Basic Information

Item Value
gene id LOC110485200
gene name cacng2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 48279842 ~ 48360869 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941342.1
CTTTAATAGGCTATCTTTCCAGCATCGGTGGACGAGCACTGTAGCCTACTAAAGCCAGAGTATAGCATCAGTCAATGTGGGAAGAAAATATGCTCATAATCTTCAGCACTACAATCAGCATTCAAACACTGACATAAACCATCGTTTTAGAGGATAAAACTTCAATTAAATGCATAGCGCTGACACTGACATCCAGAATATACGGACTCCAATTTGCGCCCCTCTCAACAGCTCTGTGGATCGGTGCTGTTGGGTCGGCGTGGCGTGCTCTCGGTCTCTTCCTCCGGTTGTGTAATATTTTTCTAGCCCAGCTACACACTCCTACACCCTCAGAAGAAAAACTCCGCTGTCATCTGAACGAACAAGGGAAGGAACAAGGATTGGAACATATACTGTCGTTTTTTGCTTTGATTTGCAACTGAGTTTTCTATCAGATTATTTTCGATTTACATGGCGCAAGGGCTATGCAAGTGGGAAGGTTCTGGTTCCGGTTCTGGGTGTGATACAACCGTGCATTTGGATATCCAAGTAACAACAGTATTAACAGTGGTACTAAAACGGATCAGTTCCAGCGGCATCCCCAACTCCTCTTTCTCATCTTCCCGGCTCTATGTCGAGTAATGGTCGGCTTGCCTTGCTGGATGCACCCGGCTCTCTCCGGATCGTCGACTGCACCCTTTCCAACCGCAAATCCCCATTTTCAGCGGAAACCTTCGAAGAGCTAAGGGCTACATATGGAAACTGGGGATCAGAATTTTAGGAAAAAGGAAATCTAGCGTTTGTTTAATTTGTTTTCGACCTGATTTATCTGTTTCTTTACCAATTAATTGATTTATTCATTGGGCTTGATTTCTTTATTCCATTGTTGGTTGATTTATCAAATTGATGCAAGCCCTATAATATTTTACCTTCTTATATAATATAGACCCCAGgaatattttcatttgtttccaCTGGACTTAAATCGTCCATTTATTTAcaattgcttttcttattttcccTGTCCTTCATTTCCCGTCCCTGTTTCTCTCCTTGCTTTTCCATCTAGACTATAATAGCCCTCACATAGCGTTATTCAAACATAATTAAAcataaaatatatacaaattcAACATTATATGCCAACAATAATTGTAATTAATTTCGCATCTAAGAGACGTATTGACTTGCCAGGCAGGATTGTTGTAAGCCTACCATTACTCTAACACCACTCTTTTCTTCATCCATTTCAGCTCATATTCATTCAGTGCTGTCCATAAAATAGTACTTATCTGCTAACCTTGCACATCAAGAAACACATTGCCAGCAATCTACATGTGTTAAATGCTACATTGTAAAGCATGAGACAAAAGCTAGTCTCAAAGCGTAATAGCCTACTGAATTTTGATTGACGCTATCCCCTTTTCCATTTATattacagtctctctctacctatcaCTTACGGTGATTGTATAATATACATAATATTATCTTTACATTAGTAGGTTTATGCTGCAACTGCCAGTGTAGGCTAGTTGTAGTCATAGGGATAACAGTTGACGCTATAGTCAATTTTAGAGGCCATTACCTTGTCCATAATTCTTATATTTGGGGTAACATTTAGTAAGAACCCATCTGGGGAGAGAGACACCGCGTCCTCCTCCACAAACTACCCTAAAAGACAACCCAATTTCTCTTAGTCAGTCCTCACCCAAACGCAACCATAAGGTTCCTACCGCATccacctccttccccctcctttcGCTCAAATATATCCCATTTTTTTAGTTTGGTTTGGTCCCGTAAATTTTCAAATATTTATTTCCTATATATCAAGAGGAAAGGGGGTCCCCCTTTCATGGAATGCGGAAATATGGGTCTGTTTGACCGCGGAGTTCAGATGCTATTGACCACGGTCGGCGCATTTGCCGCCTTCAGTCTCATGACCATCGCGGTTGGCACGGACTACTGGCTGTACTCGCGCGGCACGTGCAAGTCAAAGTCGGTCAGCGATAACGAGACCAGCAAGAAGAACGAAGAGGTGATGACCCATTCGGGATTGTGGAGGACGTGTTGCTTAGAAGGGAACTTTAAAGGGATGTGTAAACAGATAGATCACTTTCCTGAGGACACGGACTATGAAGCGGACACCTCTGAGTACTTCTTACGTGCGGTGCGAGCTTCCAGCATCTTCCCCATCCTCAGTGTCATTCTGCTCTTCATGGGAGGCCTGTGTATAGCTGCCAGCGAGTTCTACAAGTCACGCCACAACATCATCCTCAGCGCAGGGATCTTCTTTGTGTCTGCAGgCCTGAGCAACATCATCGGGATCATCGTGTACATATCAGCCAACGCAGGGGACCCCTCTAAGAGCGACTCGAAGAAGAACAGCTACTCCTACGGCTGGTCCTTCTACTTCGGAGCCCTGTCCTTCATAATGGCTGAGATGGTGGGCGTCCTGGCAGCCCACATGTTCATTGACCGCCATCGGCAGCTCCGGGCAGGGGCCAGGGCTGCCGACTACCTCCAGGCCTCGGCCATCACACGCATCCCATCCTACCGTTACCGCTACCGACGCCGCTCGCGCTCCTCCTCCCGGTCCACAGACCCCTCGCACTCCCGCGACACCTCACCTGTGGGCCTCAAGGGCTTCAGCGCGCTACCCTCTACAGAGATCTCCATGTACACGCTGCCCCGGGACACCCTGAAGGCCGGGGGCACGCCGACCGCCACCTACAACTCGGAGAGGGACCATACCTTCCTGCAGGTCCACAACTGTATTCAGAAGGAAAAAGACTCGGCCAACACCAACACAGCCAACCGCCGCACCACACCAGTATGAGGGAGCCCTGAGAGCAGAGCCCGGGGGAGCGAAGGCAGGGAGGCCCCCACCCAGGTCTCTAATATACCATAGGCCAGGATGAGTTTCCATCTTTATAGAGATTGATGATTTTATTTCATTCAACTGCATGATTTTCCCATCTACCATTGTTGAGAGAGTCTAAAGAGGTTTGTTGAGTTCCTTTGGAGTAAATGGTTGTACTGGGAGAATGGGGCAGATTGTCCTTAGAGACTGAGTCATTTTTATGGGTGAGGATGGGTGATGAGGGTGGTGCACTGAAAGGGAGGGTTTTGATTTAAATTTGATTCATGATTTCATAACCTTTTGGTTTTGACAGTTTGGCTCCACAGTTTTGGTGGTGCAACATGCTGCTGTACTTTCCCATCATACCACCTGCCATATGCCTCTGATTCGTTGtcatatttattcatttatttattttctgtattAAAACTGTGAATTTTTGCAGCTTGGGATTCAGTAAGAATTAGCCCAGTCTGTAAACTCTAACAAAGGTACTATATGTGTGTTACATttataaataaatgattaagttAATAATCAAGAGATACAGACTTTACtgaagaaaaaacaacaacaagtaAACTAAACTAAGTGCTGTTGGTAACACGAGAAAAGACTCTTTTAGGATCTGCTGGAAGGatgacagagccagagagaatgTGCTGTAGGTACACTACACTACGGAGCTGCTGAGACATGGCGAGGGACAGACGCACACAACCAACAGTAGAAAAATAGAGATTATTTTAATAGAACCTTCTCGCCTTTTTCTGAGTCCCTGTTCGCTTTCTTTTTTTGGGTGGGGGGGTGTCATGGGAGTGTTGAACCCCTCAAGAGAAACCACCAACAACAATGGGGTCAAAGTTCAAACCAAGAAAAAAAGACTCCAAACACGACTTCTCGAAGaaaaaggaaggaggagagggggaggaaaagaaGAGGACGCCAAATACAAAAAGAAATACTTGCGTAAAAGGCAAGCAACAAGATAAATATGAAATAGTACAAGAGAAGCTAAGTGAATCAACTTTTCTGAAATTAAATGCATGCTATAAAATTACAGCAAATCTGCTCTTTTAAAACTGAAGTTTTAAAGGATAATGATAATTAGAAGGGGGAAAAAGTGATGACGCTAACGTTGAAACTAGTAATGTTTCATGAGTATTTTCTCtcttatgtttttttatttacttcATTTTATCTTATGCTTTTGTGAAAGAAACCAAACAATCGACAttgaacaaaaacacattttttttaaatggtttggTTTAAttctttatataaatatatatatgtatgtatgtatatgtatgtattttatttttcaaattcACACAGCCTTAGTCATTTCTTTGTTTCTTTTGATTGTCAATGTGTTGTTCAAATTGAAAATGAAATCTTTAAAGGTGCCAAAACCGAATGATCCTTTACTTGGATGCATCAAGTCCTGATGAATAAAATACCAATCTTAGGGAGAACAAATC

Function

symbol description
cacng2 Predicted to enable channel regulator activity and voltage-gated calcium channel activity. Predicted to be involved in several processes, including neurotransmitter receptor internalization; neurotransmitter receptor transport, postsynaptic endosome to lysosome; and postsynaptic neurotransmitter receptor diffusion trapping. Predicted to act upstream of or within several processes, including membrane depolarization; membrane hyperpolarization; and neuromuscular junction development. Predicted to be located in endocytic vesicle membrane and plasma membrane. Predicted to be part of AMPA glutamate receptor complex. Predicted to be active in glutamatergic synapse; hippocampal mossy fiber to CA3 synapse; and postsynaptic density membrane. Predicted to be integral component of postsynaptic density membrane. Implicated in autosomal dominant non-syndromic intellectual disability 10.

NR:

description
voltage-dependent calcium channel gamma-2 subunit

GO: NA

KEGG:

id description
K04867 CACNG2; voltage-dependent calcium channel gamma-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941342.1 True 4332 mRNA 0.43 4 48279842 48360869

Neighbor

gene id symbol gene type direction distance location
LOC110486626 LOC106606914 coding upstream 47905 48219979 ~ 48231937 (+)
LOC110486624 LOC106606913 coding upstream 75021 48197514 ~ 48204821 (+)
sstr3 LOC106601468 coding upstream 112976 48148399 ~ 48166866 (+)
rac2 LOC106601467 coding upstream 143523 48119316 ~ 48136319 (+)
LOC110486620 LOC106601507 coding upstream 177812 48093008 ~ 48102030 (+)
LOC110486632 LOC106601556 coding downstream 114935 48475804 ~ 48486385 (+)
LOC110486639 rund1 coding downstream 127576 48488445 ~ 48493519 (+)
LOC110486640 LOC106601555 coding downstream 135744 48496613 ~ 48498675 (+)
ifi35 LOC106606925 coding downstream 139642 48500511 ~ 48506208 (+)
LOC110486644 LOC106601551 coding downstream 171641 48532510 ~ 48540487 (+)
G1182240 NA non-coding upstream 9015 48270610 ~ 48270827 (+)
G1182204 NA non-coding upstream 82812 48196808 ~ 48197030 (+)
G1182196 NA non-coding upstream 91760 48187839 ~ 48188082 (+)
G1182182 NA non-coding upstream 111791 48167065 ~ 48168051 (+)
G1182130 NA non-coding upstream 171701 48107776 ~ 48108141 (+)
G1182308 rl3 non-coding downstream 60461 48421330 ~ 48445610 (+)
G1182331 NA non-coding downstream 93422 48454291 ~ 48462154 (+)
G1182318 NA non-coding downstream 104011 48464880 ~ 48467408 (+)
G1182317 NA non-coding downstream 108509 48469378 ~ 48472671 (+)
G1182334 NA non-coding downstream 109334 48470203 ~ 48478610 (+)
G1182153 NA other upstream 157267 48119613 ~ 48122575 (+)
G1181955 NA other upstream 536778 47742361 ~ 47743064 (+)
G1181636 NA other upstream 730294 47549279 ~ 47549548 (+)
tmem100a LOC106606948 other upstream 809830 47468012 ~ 47471205 (+)
G1181472 NA other upstream 905365 47374163 ~ 47374477 (+)
G1182354 LOC106601550 other downstream 195145 48556014 ~ 48561624 (+)
G1182541 NA other downstream 585880 48946749 ~ 48947969 (+)
G1182555 NA other downstream 617131 48978000 ~ 48981403 (+)
G1182595 NA other downstream 702916 49063785 ~ 49065142 (+)
G1182629 NA other downstream 754106 49114975 ~ 49118697 (+)

Expression


Co-expression Network