LOC110486634 (LOC106601558)


Basic Information

Item Value
gene id LOC110486634
gene name LOC106601558
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 48451625 ~ 48475721 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558388.2
GGAAGTGCTTCCTGTATTGTAATGGCCTGATGGATCACATCTATGTGTGTCAGTATGGGGCCAGCTGCACCAGCTGGTACAAAACACCAACCCACTTCAGTGGCACCCTGTTCCCAAGGACAAACACGGTGTGGTGTTTGTTTTTCTCAGGATGCTTTTGTGAAGATCACGCGCAACGAGGGGGTCAGGTCTCTGTGGAGCGGGCTGCCTCCCACACTGGTGATGGCGGTGCCTGCCACGGTCATCTACTTCACCTGCTATGACCAGCTCAGAGACTTACTGCGCTACGGCATGGGGTTCCAAGGCAACTACATCCCCCTGGTGGCTGGGGGTCTCTCTAGACTGGGAGCAGTGAGTGTGATCAGCCCATTAGAGCTGGTGCGTACCAAGATGCAGTCCCGGAAGCTGACCTACAGCGAGCTGAGGGTGTGTATCCGCTCTAGTGTTGCCCAGGATGGCTGGCTGTCCCTGTGGAGGGGCTTGGGACCCACCGTCCTACGAGACGTCCCCTTCTCAGCCCTGTACTGGTTCAACTATGAGCTGGTGAAGGCCCATCTGTGTGATCAGTACAATGTGTCTCAGGCCACCTTCTCCATCAGCTTCACAGCAGGGGCCATCTCTGGAGCTGTTGCTGCCATCATGACTCTACCTTTTGACGTGGTGAAGACACGAAGACAGATCCaactgggagagatggagacactgGGAGTCCCTGTGAAGTATCCCACATCCACATGGCATATCATGAGGGGAATTTTGGCTGAATCGGGATACAGGGGGCTCTTTGCAGGTTTCCTACCCAGGGTGATCAAAGTTGCCCCAGCCTGTGCTGTCATGATCAGCACCTATGAGTTTGGGAAGAGCTTCTTCCAGAAGATGAACCTTGACCGGGAGCAACGGGCCTGctgaggggctgtgtgtgtggagaaGCAGGGTTGGCTACCTTCTTCTGGGGCAGAATGGGAAGACCAAATGCATGGTTGAGCTGAGATGAGTGGATATTCTTAATGTAGCATTCTCTCATATTGATTTGTCATCTGACCAATGGTAGCCTACTATTCAATGTCCATTTTTGTGATGGGAATAAATACCATGTAGGTA
>XM_021558385.2
AAACAAGCACTTAGTAGTGGGGATGTTGTAGTTTCAATGAGCAAGGCAGAGGCAACAcgcctgatatggacagtgatggtgcAGAGATGGCAGGAACAGTGTAATAGTGATACGAAGGGCAGGCATTTATTTCCGAAGGGCAGGCATTTATTTCAAGTAAAGAGGCAAGTCAGGGAGGGGAGGACGCACATTtataattctaacagcttttttgttggCAGAGTATTTAAATGTCTTAAAATATAGTTCAATGGCTTTTTGCAAGGGAAGAAGAAGAATAACCAAGCAAGAACCGTGGTCAGACTAATGGAAGGCGTGTCTTGTCACGGCAGACGAATCAGGGGTCGGTTTACTTGTTCCTAGCTCGATAGCTTTGTCAAGTTAGCTAACAGCAGCTCACGGTTGTGGACAGCATGTCCATTCAACACTTAGGGAAACAGGCAACATGCCATGAAATCTCATCAAATTCACAACGCATATAGATACCCGTTATAGCTACGCTATAAACTAGAGgTGGTCAGGATGGGGGAACGGCCTGTTGTTACCCCCTCAGCTGGGATCACTCCAGTGCAGCAGATGCTGGCCTCTGGCACTGGGGCGCTGCTCACATCAGTGTTCGtCACACCACTGGACGTGGTGAAGATAAGGCTGCAGGCCCAGCAAACACCATTCTATCAAGCTTTAGCTGCTGACTCTGCTTCATGGAGTGGTGTAATCCGCCCCTCCAAATGGAAGTGCTTCCTGTATTGTAATGGCCTGATGGATCACATCTATGTGTGTCAGTATGGGGCCAGCTGCACCAGCTGGTACAAAACACCAACCCACTTCAGTGGCACCCTGGATGCTTTTGTGAAGATCACGCGCAACGAGGGGGTCAGGTCTCTGTGGAGCGGGCTGCCTCCCACACTGGTGATGGCGGTGCCTGCCACGGTCATCTACTTCACCTGCTATGACCAGCTCAGAGACTTACTGCGCTACGGCATGGGGTTCCAAGGCAACTACATCCCCCTGGTGGCTGGGGGTCTCTCTAGACTGGGAGCAGTGAGTGTGATCAGCCCATTAGAGCTGGTGCGTACCAAGATGCAGTCCCGGAAGCTGACCTACAGCGAGCTGAGGGTGTGTATCCGCTCTAGTGTTGCCCAGGATGGCTGGCTGTCCCTGTGGAGGGGCTTGGGACCCACCGTCCTACGAGACGTCCCCTTCTCAGCCCTGTACTGGTTCAACTATGAGCTGGTGAAGGCCCATCTGTGTGATCAGTACAATGTGTCTCAGGCCACCTTCTCCATCAGCTTCACAGCAGGGGCCATCTCTGGAGCTGTTGCTGCCATCATGACTCTACCTTTTGACGTGGTGAAGACACGAAGACAGATCCaactgggagagatggagacactgGGAGTCCCTGTGAAGTATCCCACATCCACATGGCATATCATGAGGGGAATTTTGGCTGAATCGGGATACAGGGGGCTCTTTGCAGGTTTCCTACCCAGGGTGATCAAAGTTGCCCCAGCCTGTGCTGTCATGATCAGCACCTATGAGTTTGGGAAGAGCTTCTTCCAGAAGATGAACCTTGACCGGGAGCAACGGGCCTGctgaggggctgtgtgtgtggagaaGCAGGGTTGGCTACCTTCTTCTGGGGCAGAATGGGAAGACCAAATGCATGGTTGAGCTGAGATGAGTGGATATTCTTAATGTAGCATTCTCTCATATTGATTTGTCATCTGACCAATGGTAGCCTACTATTCAATGTCCATTTTTGTGATGGGAATAAATACCATGTAGGTA
>XM_021558387.2
GTTGATGTACTGGCTAAACAAGCACTTAGTAGTGGGGATGTTGTAGTTTCAATGAGCAAGGCAGAGGCAACAcgcctgatatggacagtgatggtgcAGAGATGGCAGGAACAGTGTAATAGTGATACGAAGGGCAGGCATTTATTTCCGAAGGGCAGGCATTTATTTCAAGTAAAGAGGCAAGTCAGGGAGGGGAGGACGCACATTtataattctaacagcttttttgttggCAGAGTATTTAAATGTCTTAAAATATAGTTCAATGGCTTTTTGCAAGGGAAGAAGAAGAATAACCAAGCAAGAACCGTGGTCAGACTAATGGAAGGCGTGTCTTGTCACGGCAGACGAATCAGGGGTCGGTTTACTTGTTCCTAGCTCGATAGCTTTGTCAAGTTAGCTAACAGCAGCTCACGGTTGTGGACAGCATGTCCATTCAACACTTAGGGAAACAGGCAACATGCCATGAAATCTCATCAAATTCACAACGCATATAGATACCCGTTATAGCTACGCTATAAACTAGAGgTGGTCAGGATGGGGGAACGGCCTGTTGTTACCCCCTCAGCTGGGATCACTCCAGTGCAGCAGATGCTGGCCTCTGGCACTGGGGCGCTGCTCACATCAGTGTTCGtCACACCACTGGACGTGGTGAAGATAAGGCTGCAGGCCCAGCAAACACCATTCTATCAAGGGAAGTGCTTCCTGTATTGTAATGGCCTGATGGATCACATCTATGTGTGTCAGTATGGGGCCAGCTGCACCAGCTGGTACAAAACACCAACCCACTTCAGTGGCACCCTGGATGCTTTTGTGAAGATCACGCGCAACGAGGGGGTCAGGTCTCTGTGGAGCGGGCTGCCTCCCACACTGGTGATGGCGGTGCCTGCCACGGTCATCTACTTCACCTGCTATGACCAGCTCAGAGACTTACTGCGCTACGGCATGGGGTTCCAAGGCAACTACATCCCCCTGGTGGCTGGGGGTCTCTCTAGACTGGGAGCAGTGAGTGTGATCAGCCCATTAGAGCTGGTGCGTACCAAGATGCAGTCCCGGAAGCTGACCTACAGCGAGCTGAGGGTGTGTATCCGCTCTAGTGTTGCCCAGGATGGCTGGCTGTCCCTGTGGAGGGGCTTGGGACCCACCGTCCTACGAGACGTCCCCTTCTCAGCCCTGTACTGGTTCAACTATGAGCTGGTGAAGGCCCATCTGTGTGATCAGTACAATGTGTCTCAGGCCACCTTCTCCATCAGCTTCACAGCAGGGGCCATCTCTGGAGCTGTTGCTGCCATCATGACTCTACCTTTTGACGTGGTGAAGACACGAAGACAGATCCaactgggagagatggagacactgGGAGTCCCTGTGAAGTATCCCACATCCACATGGCATATCATGAGGGGAATTTTGGCTGAATCGGGATACAGGGGGCTCTTTGCAGGTTTCCTACCCAGGGTGATCAAAGTTGCCCCAGCCTGTGCTGTCATGATCAGCACCTATGAGTTTGGGAAGAGCTTCTTCCAGAAGATGAACCTTGACCGGGAGCAACGGGCCTGctgaggggctgtgtgtgtggagaaGCAGGGTTGGCTACCTTCTTCTGGGGCAGAATGGGAAGACCAAATGCATGGTTGAGCTGAGATGAGTGGATATTCTTAATGTAGCATTCTCTCATATTGATTTGTCATCTGACCAATGGTAGCCTACTATTCAATGTCCATTTTTGTGATGGGAATAAATACCATGTAGGTA
>XM_021558386.2
GTGCAGTAGTTCAAATGATAAATATAAATACTGTCATTGGGACAAACCAATAATAACAGATAGGATGGAGGAGGAACAAGCAAGGGCAATGACTCATGCTGGGAACATGAGCGAAGACAGAACACAAGCTTTCGgTGGTCAGGATGGGGGAACGGCCTGTTGTTACCCCCTCAGCTGGGATCACTCCAGTGCAGCAGATGCTGGCCTCTGGCACTGGGGCGCTGCTCACATCAGTGTTCGtCACACCACTGGACGTGGTGAAGATAAGGCTGCAGGCCCAGCAAACACCATTCTATCAAGCTTTAGCTGCTGACTCTGCTTCATGGAGTGGTGTAATCCGCCCCTCCAAATGGAAGTGCTTCCTGTATTGTAATGGCCTGATGGATCACATCTATGTGTGTCAGTATGGGGCCAGCTGCACCAGCTGGTACAAAACACCAACCCACTTCAGTGGCACCCTGGATGCTTTTGTGAAGATCACGCGCAACGAGGGGGTCAGGTCTCTGTGGAGCGGGCTGCCTCCCACACTGGTGATGGCGGTGCCTGCCACGGTCATCTACTTCACCTGCTATGACCAGCTCAGAGACTTACTGCGCTACGGCATGGGGTTCCAAGGCAACTACATCCCCCTGGTGGCTGGGGGTCTCTCTAGACTGGGAGCAGTGAGTGTGATCAGCCCATTAGAGCTGGTGCGTACCAAGATGCAGTCCCGGAAGCTGACCTACAGCGAGCTGAGGGTGTGTATCCGCTCTAGTGTTGCCCAGGATGGCTGGCTGTCCCTGTGGAGGGGCTTGGGACCCACCGTCCTACGAGACGTCCCCTTCTCAGCCCTGTACTGGTTCAACTATGAGCTGGTGAAGGCCCATCTGTGTGATCAGTACAATGTGTCTCAGGCCACCTTCTCCATCAGCTTCACAGCAGGGGCCATCTCTGGAGCTGTTGCTGCCATCATGACTCTACCTTTTGACGTGGTGAAGACACGAAGACAGATCCaactgggagagatggagacactgGGAGTCCCTGTGAAGTATCCCACATCCACATGGCATATCATGAGGGGAATTTTGGCTGAATCGGGATACAGGGGGCTCTTTGCAGGTTTCCTACCCAGGGTGATCAAAGTTGCCCCAGCCTGTGCTGTCATGATCAGCACCTATGAGTTTGGGAAGAGCTTCTTCCAGAAGATGAACCTTGACCGGGAGCAACGGGCCTGctgaggggctgtgtgtgtggagaaGCAGGGTTGGCTACCTTCTTCTGGGGCAGAATGGGAAGACCAAATGCATGGTTGAGCTGAGATGAGTGGATATTCTTAATGTAGCATTCTCTCATATTGATTTGTCATCTGACCAATGGTAGCCTACTATTCAATGTCCATTTTTGTGATGGGAATAAATACCATGTAGGTA

Function

NR:

description
solute carrier family 25 member 39-like isoform X1

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15119 SLC25A39_40; solute carrier family 25, member 39/40

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558388.2 False 1101 mRNA 0.53 8 48451625 48454401
XM_021558385.2 False 1791 mRNA 0.51 12 48451625 48475025
XM_021558387.2 False 1755 mRNA 0.51 11 48451625 48475040
XM_021558386.2 True 1412 mRNA 0.53 12 48451625 48475721

Neighbor

gene id symbol gene type direction distance location
LOC110486638 rl3 coding downstream 2849 48444052 ~ 48448776 (-)
LOC118938628 NA coding downstream 4895 48446637 ~ 48446730 (-)
LOC118938630 NA coding downstream 6152 48445394 ~ 48445473 (-)
LOC118938615 NA coding downstream 7233 48444262 ~ 48444392 (-)
LOC110486633 rl3 coding downstream 25303 48421651 ~ 48426322 (-)
LOC110486641 bcat1 coding upstream 30542 48506263 ~ 48514910 (-)
LOC110486643 LOC106606926 coding upstream 46348 48522069 ~ 48529995 (-)
LOC110486646 LOC106601550 coding upstream 68458 48544179 ~ 48572065 (-)
LOC110485203 ppfia3 coding upstream 148085 48623806 ~ 48665589 (-)
LOC110486648 nucb1 coding upstream 194510 48670231 ~ 48683477 (-)
G1183217 NA non-coding downstream 20122 48428988 ~ 48431503 (-)
G1183194 NA non-coding downstream 21540 48368061 ~ 48430085 (-)
G1183195 NA non-coding downstream 69804 48373657 ~ 48381821 (-)
G1183190 NA non-coding downstream 89606 48361598 ~ 48365100 (-)
G1183142 cacng2 non-coding downstream 169722 48280020 ~ 48281903 (-)
G1183212 NA non-coding upstream 12027 48487748 ~ 48488246 (-)
G1183223 rund1 non-coding upstream 15092 48490813 ~ 48493597 (-)
G1183222 rpl27 non-coding upstream 20987 48496708 ~ 48498597 (-)
G1183224 NA non-coding upstream 41000 48516721 ~ 48519707 (-)
G1183318 LOC106601548 non-coding upstream 143280 48619001 ~ 48621604 (-)
G1183196 NA other downstream 61907 48379267 ~ 48389718 (-)
G1183192 NA other downstream 74659 48364056 ~ 48376966 (-)
G1183126 NA other downstream 191636 48259524 ~ 48259989 (-)
G1183013 NA other downstream 425849 48025101 ~ 48025776 (-)
G1183337 NA other upstream 192067 48667788 ~ 48668082 (-)
LOC110486656 syt3 other upstream 421958 48875671 ~ 48936482 (-)
LOC110485205 LOC106597701 other upstream 497462 48959315 ~ 49053966 (-)
setd1a LOC106585476 other upstream 880657 49346540 ~ 49361234 (-)
LOC110486687 LOC106601611 other upstream 1011205 49486817 ~ 49504819 (-)

Expression


Co-expression Network