LOC110486639 (rund1)


Basic Information

Item Value
gene id LOC110486639
gene name rund1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 48488445 ~ 48493519 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558393.2
TTCAAGATGGCGATGCACCTGCTTCATCGGTGGTAAAAAACGGTGTACATAAACGATAAAACAAAGCGTCGTTTCCAGTTGACAATAACTTTAATATCGGAGGACAACGTTGTCTTTATTACCTTTCAAACATGTCGACAGAGGAACTGTCAACCTCGGACAGCGAAGCTGCCTTTGCTGGGGCTGGCGAGCGATGGGCGCCCGTCGGCGCTGTAGCCAGTCCGGAGGATGAGAGCGGGAAGGGAAACGCGGTCGAGCCGAGGAGGAAAGGCTCAGCTGCGTCTGGTGAGACGGAGATGGCCGCAAGATTGAGGAAATTGGAGGACGAACAGGGCCTGCTGAATTCCTCGCTCCTCGCTTTGACATCTCATTTTGCACAAGTGCAGTTCCGCTTGAAGCAGATAGTTCACGCTCCGActgatgagaaggagaggatgCTGGTAGAACTCGAGGAGTTTGCCTTCAAAGGCTGTCCTCACGTTGTGGGATGCAGGCCACAGGATACTCAACAGCTCGAAAACGCGGAGGACCTGagtgagagggagaagagggagcgtCTGGAGGTCCAGAGGGAGAAGCAGAAGGAGCTCATCGTCCAGCTGAAGACCCAGTTGGATGACCTGGAGCGCTATGCCTACCAGGAGGGCAGCTATGACTCCCTGCCCCAGTCTGTGGTCatggagagacagaagGTAATCATTGACGAGTTGATCAAGAAGCTGGATGTGAACTTCAATGAGGACATAGGGAACCTGACGCCTGAGGAGCTAAGACAGAGAGTGGACGCTGCCATCGCTCAAATAGTCAACCCAGCCAGGGTTAAGGAGCAGCTGGTGGACCAGCTCAAGACCCAGATCAGGGACCTAGAGATGTTCATCAACTTCATCCAGGATGAGGTAGGGAACCCTCTTCTGTCTGATGGTGAACCCAGCCAGCAGCCGAGGACAGCAGGGCCCAACACCAGAGCccctggagggaggaagaaaaTGGACCCAGAGCAggcccagaagatgaggcagacaggCTTGGAGCTGATCCAGCGGGCCCTGGCTGTGCTGCAGATCTTTGCAGTGAGCCAGTTTGGCTGTGCGGCTGGCCACGTTCCCCAGAGCATGTGGTCGCAGGGGGAAGTGGGCCAGGACTACGGCCCTCTGCTGCAGCGTCTGGAGGGGGCTGTAGACCGGGTTCGAGTGCAGGCCTCGTGCAGACAGCCCTCAGTAGATCACGTGGTCAGCTACAACAGCAGCTTGGCCCTGGGGTCCCGTGATGAGCTCACTGCCTCAGTGAGGAAGGAGCTGGCCATGGCTCTGAGAGACCTGCTAGCCCATGGTCTCTACTCCCCCTCCCAGGGCATGAGCCTGGTGCTGGCCCCCATCTCCTGCCTGCTGCCCTACAGACCTGGCCCATCGACCATCCACCCCTGGGAGCTCTTTGTCAAGTACTACCACTCCAAAAATGGCAAGGCCTTCGTGGAGTCGCCTGCCCGCCAACTCTCGCAGTCCTTCAGCCTACCTGTTGCGGGCAATCCGGTCACTGTCACACCCAAGCAGTCTCTGCTCTGGGCCATTCACTCAGTGTTGCTGGAGCACGATCGCTACAAGCGAGGAGCAGACTCAGAGTTCAAGGCTCTGGTATGCATGGCTCTGAATGAGCAGAGGCTAGTGTCATGGCTTAACCTGCTTTGCAAGTCAGGGGCCTTGGTGCACCCGCACTACCAGCACTGGAGCTACATGGCCCAGACAGGCTTCGAGGGAGCCCTGCGCATCCTGGGACGTATCAGCCACCTCAAGTTTAACCTGCCGGTGGACCTGGCTGTGAGGCAGCTCAAGAACATCAAGGATGCCTTCTGAGAAGGGACTGTCGAGAGTCACCCAAAACCATGCTTTCAGCTCACATGGTTACCAGGCCTGATTTAAgagtaaaaaataatacaatcaACTGGCCTTTGAGGACCGGGAGGCATGGCTTGGGTCTTCCTCAAGTGCTGAAATTATAATTGGCATAAAAGATTTGTGCTAATGTTGCTTTATCCGTTTAACTTTAAATTTATCTTGGGTCATTGGGTCAAAACATTTTTGTTAGCATCCTGTCTAAACATGGCATGAATTCCGTGCGAAGCTGTTCAACAAAAATCAAGTGTGCAATGTTGAGATGCATTATATAGCAAATCTGATTTTTATATGGCAAATCTGTAACTAACATTTAAATtatcaatgccccccccccccataaccacACAAAGGGAGCAGCATATCAAGATCTTAATGACTTGTTACATTGCATTATATGGAGCTTGTTGCCTCCCCTTAGGAAACACTTCCTTTATGTGATGTTGTTTGACTTGTCCCTATGGAGATGAGATACAGTAGCTCAGACCTATGCAGATAATATCATGAGGTTGGCCTTTTACAGTAATTCACTACTGTATAATGATTACCTATAGAATGGGTGATCATCAATGTGACCAAATGTATAGTCATTCCCTCCCCATACTCTGTAGTATGGGCAAAAACAGACCAGTATCCTGCACTGTCACTAAACTGTACAATTTGTGTTCTCTACGGAAGAGAATAATATGGGTTACTACAGTTCACATTCACAGAGCATTGCTCCCTGTCTGTGGTTACTCAAAGCTCCACTGTTGTGTTCACAGAAGACGCACACTATTCAATGCACTCAGGTCAAATGAACGTGGCAACAGTGTATGCTCTCACCAATGAATGTACAAGAGAGGTCAAAATTCTAAAGATGTCACAAGTGTTCTGAAAATCAAAATGATAACTCATGCAGCATGTAGTGTCTCTCCGTTGAGAAATAAGCAGAACCTGCCTAACGTGTCTTAAAGGTGGATAACGTAGAGACCCTGTATTAACTGCTGCTTTACTGGTCCAAATGGAAGTGATTcaaaaaattacaaaaatatatatgattTCACTATTTAGCTTATGTAATTACATATTTAATCATCTAATATTTAAGATGATTGTGGGATGTGATCGTTTTCTCTGTTTCTATTCGTTTTTTGAATGGTGAATGAAAACCACTTGAAGTGAAATCTTCCTATTACATGTGAATCACATGGGGTGTATCCTGAAAAGCTGAATGTACAAACCATAGATACTGTTCATTTCCACATGAGTGAAAACTGTTATCATCCCTGGTATGGTTTTTCCAACCCTCATATTAAGGTGTTACCTACTTTGTTACTGGTTAAGTGCTGCTCCCAGACTTTCTGTTCTATTCTTTTATGGTCTATGGTATTGTATTGAGATCTATTTCTATTTTGTTGTATAGTAAATTGCAAATGCCTCAGCCGGACCACTACCAGACTATGCTTGGATCTGGTCTGTGCTTTACTGGTGTGCATCTCCATGTAGTGAATGGGAGGACAGGTTGTCCTACATCGAAAGGGATACTTTGGTTTGCATACTTCTGATGTGTTAGTGTGAATATCAATACCCCCTTCATTTAGCCTGCATTGTtactttttcttcttttttttgcaCTGTGCTCATGTCAAAACTACTGTTAACGCAAACATAGATGCACACATCACAATACTACTACTAAGCAATGTACATTTCTGTATGAAAAATGAGACTTAGTTACTGTCTCTAATTTGTTTTTGCTTTTCTGTGTATACCTTACTGGTCATATTGagaaaaagttatacagctgtttattgtttttgttcaataACTATGAATGTGAGCAAATAAACTATTTCAAAAACCTA
>XM_021558394.2
TTCAAGATGGCGATGCACCTGCTTCATCGGTGGTAAAAAACGGTGTACATAAACGATAAAACAAAGCGTCGTTTCCAGTTGACAATAACTTTAATATCGGAGGACAACGTTGTCTTTATTACCTTTCAAACATGTCGACAGAGGAACTGTCAACCTCGGACAGCGAAGCTGCCTTTGCTGGGGCTGGCGAGCGATGGGCGCCCGTCGGCGCTGTAGCCAGTCCGGAGGATGAGAGCGGGAAGGGAAACGCGGTCGAGCCGAGGAGGAAAGGCTCAGCTGCGTCTGGTGAGACGGAGATGGCCGCAAGATTGAGGAAATTGGAGGACGAACAGGGCCTGCTGAATTCCTCGCTCCTCGCTTTGACATCTCATTTTGCACAAGTGCAGTTCCGCTTGAAGCAGATAGTTCACGCTCCGActgatgagaaggagaggatgCTGGTAGAACTCGAGGAGTTTGCCTTCAAAGGCTGTCCTCACGTTGTGGGATGCAGGCCACAGGATACTCAACAGCTCGAAAACGCGagtgagagggagaagagggagcgtCTGGAGGTCCAGAGGGAGAAGCAGAAGGAGCTCATCGTCCAGCTGAAGACCCAGTTGGATGACCTGGAGCGCTATGCCTACCAGGAGGGCAGCTATGACTCCCTGCCCCAGTCTGTGGTCatggagagacagaagGTAATCATTGACGAGTTGATCAAGAAGCTGGATGTGAACTTCAATGAGGACATAGGGAACCTGACGCCTGAGGAGCTAAGACAGAGAGTGGACGCTGCCATCGCTCAAATAGTCAACCCAGCCAGGGTTAAGGAGCAGCTGGTGGACCAGCTCAAGACCCAGATCAGGGACCTAGAGATGTTCATCAACTTCATCCAGGATGAGGTAGGGAACCCTCTTCTGTCTGATGGTGAACCCAGCCAGCAGCCGAGGACAGCAGGGCCCAACACCAGAGCccctggagggaggaagaaaaTGGACCCAGAGCAggcccagaagatgaggcagacaggCTTGGAGCTGATCCAGCGGGCCCTGGCTGTGCTGCAGATCTTTGCAGTGAGCCAGTTTGGCTGTGCGGCTGGCCACGTTCCCCAGAGCATGTGGTCGCAGGGGGAAGTGGGCCAGGACTACGGCCCTCTGCTGCAGCGTCTGGAGGGGGCTGTAGACCGGGTTCGAGTGCAGGCCTCGTGCAGACAGCCCTCAGTAGATCACGTGGTCAGCTACAACAGCAGCTTGGCCCTGGGGTCCCGTGATGAGCTCACTGCCTCAGTGAGGAAGGAGCTGGCCATGGCTCTGAGAGACCTGCTAGCCCATGGTCTCTACTCCCCCTCCCAGGGCATGAGCCTGGTGCTGGCCCCCATCTCCTGCCTGCTGCCCTACAGACCTGGCCCATCGACCATCCACCCCTGGGAGCTCTTTGTCAAGTACTACCACTCCAAAAATGGCAAGGCCTTCGTGGAGTCGCCTGCCCGCCAACTCTCGCAGTCCTTCAGCCTACCTGTTGCGGGCAATCCGGTCACTGTCACACCCAAGCAGTCTCTGCTCTGGGCCATTCACTCAGTGTTGCTGGAGCACGATCGCTACAAGCGAGGAGCAGACTCAGAGTTCAAGGCTCTGGTATGCATGGCTCTGAATGAGCAGAGGCTAGTGTCATGGCTTAACCTGCTTTGCAAGTCAGGGGCCTTGGTGCACCCGCACTACCAGCACTGGAGCTACATGGCCCAGACAGGCTTCGAGGGAGCCCTGCGCATCCTGGGACGTATCAGCCACCTCAAGTTTAACCTGCCGGTGGACCTGGCTGTGAGGCAGCTCAAGAACATCAAGGATGCCTTCTGAGAAGGGACTGTCGAGAGTCACCCAAAACCATGCTTTCAGCTCACATGGTTACCAGGCCTGATTTAAgagtaaaaaataatacaatcaACTGGCCTTTGAGGACCGGGAGGCATGGCTTGGGTCTTCCTCAAGTGCTGAAATTATAATTGGCATAAAAGATTTGTGCTAATGTTGCTTTATCCGTTTAACTTTAAATTTATCTTGGGTCATTGGGTCAAAACATTTTTGTTAGCATCCTGTCTAAACATGGCATGAATTCCGTGCGAAGCTGTTCAACAAAAATCAAGTGTGCAATGTTGAGATGCATTATATAGCAAATCTGATTTTTATATGGCAAATCTGTAACTAACATTTAAATtatcaatgccccccccccccataaccacACAAAGGGAGCAGCATATCAAGATCTTAATGACTTGTTACATTGCATTATATGGAGCTTGTTGCCTCCCCTTAGGAAACACTTCCTTTATGTGATGTTGTTTGACTTGTCCCTATGGAGATGAGATACAGTAGCTCAGACCTATGCAGATAATATCATGAGGTTGGCCTTTTACAGTAATTCACTACTGTATAATGATTACCTATAGAATGGGTGATCATCAATGTGACCAAATGTATAGTCATTCCCTCCCCATACTCTGTAGTATGGGCAAAAACAGACCAGTATCCTGCACTGTCACTAAACTGTACAATTTGTGTTCTCTACGGAAGAGAATAATATGGGTTACTACAGTTCACATTCACAGAGCATTGCTCCCTGTCTGTGGTTACTCAAAGCTCCACTGTTGTGTTCACAGAAGACGCACACTATTCAATGCACTCAGGTCAAATGAACGTGGCAACAGTGTATGCTCTCACCAATGAATGTACAAGAGAGGTCAAAATTCTAAAGATGTCACAAGTGTTCTGAAAATCAAAATGATAACTCATGCAGCATGTAGTGTCTCTCCGTTGAGAAATAAGCAGAACCTGCCTAACGTGTCTTAAAGGTGGATAACGTAGAGACCCTGTATTAACTGCTGCTTTACTGGTCCAAATGGAAGTGATTcaaaaaattacaaaaatatatatgattTCACTATTTAGCTTATGTAATTACATATTTAATCATCTAATATTTAAGATGATTGTGGGATGTGATCGTTTTCTCTGTTTCTATTCGTTTTTTGAATGGTGAATGAAAACCACTTGAAGTGAAATCTTCCTATTACATGTGAATCACATGGGGTGTATCCTGAAAAGCTGAATGTACAAACCATAGATACTGTTCATTTCCACATGAGTGAAAACTGTTATCATCCCTGGTATGGTTTTTCCAACCCTCATATTAAGGTGTTACCTACTTTGTTACTGGTTAAGTGCTGCTCCCAGACTTTCTGTTCTATTCTTTTATGGTCTATGGTATTGTATTGAGATCTATTTCTATTTTGTTGTATAGTAAATTGCAAATGCCTCAGCCGGACCACTACCAGACTATGCTTGGATCTGGTCTGTGCTTTACTGGTGTGCATCTCCATGTAGTGAATGGGAGGACAGGTTGTCCTACATCGAAAGGGATACTTTGGTTTGCATACTTCTGATGTGTTAGTGTGAATATCAATACCCCCTTCATTTAGCCTGCATTGTtactttttcttcttttttttgcaCTGTGCTCATGTCAAAACTACTGTTAACGCAAACATAGATGCACACATCACAATACTACTACTAAGCAATGTACATTTCTGTATGAAAAATGAGACTTAGTTACTGTCTCTAATTTGTTTTTGCTTTTCTGTGTATACCTTACTGGTCATATTGagaaaaagttatacagctgtttattgtttttgttcaataACTATGAATGTGAGCAAATAAACTATTTCAAAAACCTA
>TU1348328
CATTATATGGAGCTTGTTGCCTCCCCTTAGGAAACACTTCCTTTATGTGATGTTGTTTGACTTGTCCCTATGGAGATGAGATACAGTAGCTCAGACCTATGCAGATAATATCATGAGGTTGGCCTTTTACAGTAATTCACTACTGTATAATGATTACCTATAGAATGGGTGATCATCAATGTGACCAAATGTATAGTCATTCCCTCCCCATACTCTGTAGTATGGGCAAAAACAGACCAGTATCCTGCACTGTCACTAAACTGTACAATTTGTGTTCTCTACGGAAGAGAATAATATGGGTTACTACAGTTCACATTCACAGAGCATTGCTCCCTGTCTGTGGTTACTCAAAGCTCCACTGTTGTGTTCACAGAAGACGCACACTATTCAATGCACTCAGGTCAAATGAACGTGGCAACAGTGTATGCTCTCACCAATGAATGTACAAGAGAGGTCAAAATTCTAAAGATGTCACAAGTGTTCTGAAAATCAAAATGATAACTCATGCAGCATGTAGTGTCTCTCCGTTGAGAAATAAGCAGAACCTGCCTAACGTGTCTTAAAGGTGGATAACGTAGAGACCCTGTATTAACTGCTGCTTTACTGGTCCAAATGGAAGTGATTcaaaaaattacaaaaatatatatgattTCACTATTTAGCTTATGTAATTACATATTTAATCATCTAATATTTAAGATGATTGTGGGATGTGATCGTTTTCTCTGTTTCTATTCGTTTTTTGAATGGTGAATGAAAACCACTTGAAGTGAAATCTTCCTATTACATGTGAATCACATGGGGTGTATCCTGAAAAGCTGAATGTACAAACCATAGATACTGTTCATTTCCACATGAGTGAAAACTGTTATCATCCCTGGTATGGTTTTTCCAACCCTCATATTAAGGTGTTACCTACTTTGTTACTGGTTAAGTGCTGCTCCCAGACTTTCTGTTCTATTCTTTTATGGTCTATGGTATTGTATTGAGATCTATTTCTATTTTGTTGTATAGTAAATTGCAAATGCCTCAGCCGGACCACTACCAGACTATGCTTGGATCTGGTCTGTGCTTTACTGGTGTGCATCTCCATGTAGTGAATGGGAGGACAGGTTGTCCTACATCGAAAGGGATACTTTGGTTTGCATACTTCTGATGTGTTAGTGTGAATATCAATACCCCCTTCATTTAGCCTGCATTGTtactttttcttcttttttttgcaCTGTGCTCATGTCAAAACTACTGTTAACGCAAACATAGATGCACACATCACAATACTACTACTAAGCAATGTACATTTCTGTATGAAAAATGAGACTTAGTTACTGTCTCTAATTTGTTTTTGCTTTTCTGTGTATACCTTACTGGTCATATTGagaaaaagttatacagctgtttattgtttttgttcaataACTATGAATGTGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558393.2 False 3736 mRNA 0.47 6 48488445 48493519
XM_021558394.2 False 3727 mRNA 0.47 5 48488445 48493519
TU1348328 True 1432 lncRNA 0.37 1 48492064 48493495

Neighbor

gene id symbol gene type direction distance location
LOC110486632 LOC106601556 coding upstream 2060 48475804 ~ 48486385 (+)
LOC110485200 cacng2 coding upstream 127576 48279842 ~ 48360869 (+)
LOC110486626 LOC106606914 coding upstream 256508 48219979 ~ 48231937 (+)
LOC110486624 LOC106606913 coding upstream 283624 48197514 ~ 48204821 (+)
sstr3 LOC106601468 coding upstream 321579 48148399 ~ 48166866 (+)
LOC110486640 LOC106601555 coding downstream 3094 48496613 ~ 48498675 (+)
ifi35 LOC106606925 coding downstream 6992 48500511 ~ 48506208 (+)
LOC110486644 LOC106601551 coding downstream 38991 48532510 ~ 48540487 (+)
LOC110486647 LOC106601548 coding downstream 105459 48598978 ~ 48622758 (+)
LOC110486650 akts1 coding downstream 204684 48698203 ~ 48704379 (+)
G1182334 NA non-coding upstream 9835 48470203 ~ 48478610 (+)
G1182317 NA non-coding upstream 15774 48469378 ~ 48472671 (+)
G1182318 NA non-coding upstream 21037 48464880 ~ 48467408 (+)
G1182331 NA non-coding upstream 26291 48454291 ~ 48462154 (+)
G1182308 rl3 non-coding upstream 42835 48421330 ~ 48445610 (+)
G1182341 NA non-coding downstream 22565 48516084 ~ 48516283 (+)
G1182342 NA non-coding downstream 23062 48516581 ~ 48520449 (+)
G1182344 NA non-coding downstream 35395 48528914 ~ 48529433 (+)
G1182350 NA non-coding downstream 43308 48536827 ~ 48537060 (+)
G1182359 NA non-coding downstream 70298 48563817 ~ 48564807 (+)
G1182153 NA other upstream 365870 48119613 ~ 48122575 (+)
G1181955 NA other upstream 745381 47742361 ~ 47743064 (+)
G1181636 NA other upstream 938897 47549279 ~ 47549548 (+)
tmem100a LOC106606948 other upstream 1018433 47468012 ~ 47471205 (+)
G1181472 NA other upstream 1113968 47374163 ~ 47374477 (+)
G1182354 LOC106601550 other downstream 62495 48556014 ~ 48561624 (+)
G1182541 NA other downstream 453230 48946749 ~ 48947969 (+)
G1182555 NA other downstream 484481 48978000 ~ 48981403 (+)
G1182595 NA other downstream 570266 49063785 ~ 49065142 (+)
G1182629 NA other downstream 621456 49114975 ~ 49118697 (+)

Expression


Co-expression Network