LOC110486646 (LOC106601550)


Basic Information

Item Value
gene id LOC110486646
gene name LOC106601550
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 48544179 ~ 48572065 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941348.1
GTTGTTGGACTTTAAACGACAGATGAAGACAAGCTGATGAACAGAGCAGGGACAGAGCATGATGGAGAGAAGTGAGGTCAAAGGGTGAGGTCcatagagagtggaggaggtaaagaaggaaggagagagggaatagaagGAGGTTAGACTAGAATGGTCTACGTGCATTTTGACAGGATGACGAATCAGCAGCCAGTCCACCAGTCTAACAAGGCCCATTATGATGAGGCACTGCCACCCATTGTTGGAGCTGGAGTGTTGGACTTGTTGGAACCCAAACTTCCCAATAGTTTCTTGGGAACCTACTGTGGCTTCCTCATCCGAAACTCACTGCTCGTCCTTACTATACTGGGTGTAATAGCGGGGTCGCTGTTTGGGATGCTGCTGCGGTATGTTTCTATTACAGACCCCAACACCCTGATGCTGGTGTCCTTTCCTGGAGACATCCTCATGAGGATGCTGAAGATGCTCATCTTGCCCCTCATCATTTCCAGCCTCATCACAGgtcTGGCTGGTCTGGATGCTCGTTCCAGTGGGAGGATGGGCTCCAGGGCCATGGTCTACTACATGTCCACCACGGTCATAGCTGCCATCCTGGGGgtcatcctggtcctggggatccACCCGGGAAACCCCAAACTcaggagcagtcaggagcagGACACGGCCCCCAAGAACCAGGAGGTCAGCAGTCTGGACGCCTTCCTGGACCTCATCAGGAACCTGTTCCCTGAAAACCTGGTGCAGGCCTGCTTCCAACAGgttCAAACAGTAGCAAAGAAAGTGTCAGTGATGCTCCCGAACCAGACAGAACCTGTCATAGTCAGCAAGAAGAAACTGGAGTTCAAATGGGGCATGAATGTTCTGGGTTTAATTGGGTTCTTCATCACATTTGGAATGTgcatggggaagatgggtgagaAGGGGAAGCTCATGTCAGAGTTCTTCAACATCCTCAATGAGATCATCATGAAGATGGTGGGCATGATCATGTGGTACTCTCCAGTTGGTATCGCCTCTCTGATCTCAGGGAAGATAGCAGCCATCGGGGACCTGGAGGTGGTGGCTAGACAGCTGGGCATGTACATGGTGACTGTCATAGTGGGCCTAATGATCCACGGGGGCATTATCCTGCCACTCATCTTCTTCTCCATCACAAGGAAGAGCCCCTTCACCTTCTACTCCGGGATCTTCCAGGCCTGGATCACTGCCCTGGGCACCGCCAGCAGtgCGGGAACGTTACCTGTCACATTTCGCTGTCTGGAGGAGAATCTGAAGATCGATAAGCGCGTGACGCGTTTCGTACTGCCCATCGGAGCCACCATCAACATGGACGGTACAGCCCTGTACGAGGCGGTGGCAGCCATCTTCATCGCTCAGATGAATGACATCAACCTGGACGCAGGACAGATCGTTACCGTCAGtatGACAGCCACCCTGGCCAGTGTGGGAGCGGCCAGTATTCCCAGCGCAGGCCTGGTCACCATGCTGTTGATCCTTACAGCTGTGGGCCTGCCCACCCAGGACATCAGCCTGCTCATCGCTGTCGACTGGCTGCTTGACAGAATGCGTACCTCAATCAACGTGGTGGGCGACTCGTTTGGTGCTGGGATTGTGGACCACCTGTCCAGGGCAGAGCTAGCTGAGATTGACGCCGAGCTCCTCTCCCCTGAGGATGAGGAGTTCATCCCCCCGCCCCCTGTCCTCACCGAGATAGACCTGGTGGACCCCAAGAGACCCCCCGAGTTACCCCCACGCTCCCCCCGCCCGCCCAAACTCAACCACCACGGCCACTCCAACCTGTCACAGATCTACTCCATCACCAACTCTCCCCGCTCCGTCCGCTCTCCGTCCCCCCATTCTGTCCGTTCTCCCTCCCCGCGCTCCAACTGTTCCCACTCCAACTCCCCACGGCCCTCTGCCTTCCGTACCCATTCCCCACGCATCCTCCGCAGAACAGAGCCTGGCTACTGCGCCCTGCCAAGCCACGACAACCAGATCCCCACACTCCCTCgctcccacagagagagagacagaggggatagagacagaagggaaagagacagggaaagagacagggaaagagacagggagagagacagagagagagacagagagagagacagagagagagatagaggaagagagagagagagactgcgggGGCGAGACAGCGACCGATATCAGAgcgagacagaggaagaggaggagagggatagggtGCTGGATGAAGGGAGTGAAGGAGAAGAGAGTGACGACACTGCTTACGACCGCAGGAACACCATCCTGCCCTGCGACCTGCCCTGATTGGGACGCCTCTATGAAAACACTTCTGTTATACCACAGTTTCACTACACTTCCCACAATTTACTGCACTCTACCACCTAGTACCACTGTGGTGTTTTTGATAGGGGTCTGGGTTGGTGGATGCAGTGCTCTACAAATGGTTACTATTTAGTAGTTGTCTGATTTGAGTGTTCTTGTGTGATTTGAGTCCTGTTTGACAGGATCAGGGATCAATAAGCTTGCTTTGAGCGATGACGATATTTAAGTTGCTATGGCAACACCCTTTAATAATCTTTAAAAAAAGAGCCCATGCCCTAACTTTTACGCTTCAGTGTGCTGTAGAAGGGAGCTTTAACTTAGTGTTGTGTCTTCTGTTAACCCAGCTCTATTCTCTGATAATCATTGTCTTGTTCTAACCATTTCAGCTAGCCAGTTCCTCAACCTTATCCTCTACCCTCTAGCGTGGCTGAGAGAGACGCTGTACTGAGATCTTGGTGTTCAGTGTCAGTCAACGTACAATCAGAAATGTTCTCTTCTCAACTTCCAAAAGGTCATCTGTAGAACGTCGTCCATCTCCAGCTGTACTGTATCGAATGATTCAACAAATAATTATTAATTCTACTTATATGTAAGTTAAAATGTGAGATAAACTTGCGTGTAGCAACTGTATGTAATTAAAGGTAACAAACACACTGTAGTCAAACTATTTTTATACtattctacctcctctctctctcttctcttcctctccttgtccTCAACACACTCAACACTTCACTTGACTTTACCTCATCTTGTACCTCATCTTGTACCTCATCTTGTACCTCAACTTGTACCTCAACTTGTCCTGAAATGACAATCATAATACGGTTATTGTTGTTAATATTGTTATTTCTCAGTACTTATGTATGGTTAGTCATTTTTTGTCATCGTCTGCTGTCTGAAATGATGGTTGTTAgtaattttatacattttttccaGCACAACAGTCTTCAGTCTGTGTTGCACAGCAGTCTGTTTTCATTTTGATTCACGTATTCATCTACTTGTTGTTTCATTACTCTTGTACTTTAATTATTTATTGGTTAATTAAGAGATATTCTCATTGGTTCTGTCATATTGATTTGTTTTCCTCTGTCCCTCTGAAATGCCTTTCATTGAAGGTCATTACTGCCTACCCAAATCCTTCAGTCTTAATGCAGGTTTGCAGATCCAGGTTTTGTGTATATTGTATGTAATAAAATCTTAGAGATTTATTTAAA

Function

NR:

description
PREDICTED: excitatory amino acid transporter 2-like isoform X1

GO:

id name namespace
GO:0006835 dicarboxylic acid transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0017153 sodium molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941348.1 True 3548 mRNA 0.49 11 48544179 48572065

Neighbor

gene id symbol gene type direction distance location
LOC110486643 LOC106606926 coding downstream 14184 48522069 ~ 48529995 (-)
LOC110486641 bcat1 coding downstream 29269 48506263 ~ 48514910 (-)
LOC110486634 LOC106601558 coding downstream 68458 48451625 ~ 48475721 (-)
LOC118938628 NA coding downstream 97449 48446637 ~ 48446730 (-)
LOC118938630 NA coding downstream 98706 48445394 ~ 48445473 (-)
LOC110485203 ppfia3 coding upstream 51741 48623806 ~ 48665589 (-)
LOC110486648 nucb1 coding upstream 98166 48670231 ~ 48683477 (-)
LOC110487552 LOC106601568 coding upstream 111917 48683982 ~ 48686124 (-)
LOC110486649 LOC106606880 coding upstream 116963 48689028 ~ 48697978 (-)
LOC110486651 LOC106601513 coding upstream 133648 48705713 ~ 48724776 (-)
G1183224 NA non-coding downstream 24472 48516721 ~ 48519707 (-)
G1183222 rpl27 non-coding downstream 45582 48496708 ~ 48498597 (-)
G1183223 rund1 non-coding downstream 50582 48490813 ~ 48493597 (-)
G1183212 NA non-coding downstream 55933 48487748 ~ 48488246 (-)
G1183217 NA non-coding downstream 112676 48428988 ~ 48431503 (-)
G1183318 LOC106601548 non-coding upstream 46936 48619001 ~ 48621604 (-)
G1183319 NA non-coding upstream 50146 48622211 ~ 48622756 (-)
G1183330 NA non-coding upstream 84286 48656351 ~ 48656752 (-)
G1183353 NA non-coding upstream 153537 48725602 ~ 48725877 (-)
G1183354 NA non-coding upstream 153927 48725992 ~ 48726228 (-)
G1183225 NA other downstream 73196 48435826 ~ 48470983 (-)
G1183196 NA other downstream 154461 48379267 ~ 48389718 (-)
G1183192 NA other downstream 167213 48364056 ~ 48376966 (-)
G1183190 NA other downstream 179079 48361598 ~ 48365100 (-)
G1183126 NA other downstream 284190 48259524 ~ 48259989 (-)
G1183337 NA other upstream 95723 48667788 ~ 48668082 (-)
LOC110486656 syt3 other upstream 325614 48875671 ~ 48936482 (-)
LOC110485205 LOC106597701 other upstream 401118 48959315 ~ 49053966 (-)
setd1a LOC106585476 other upstream 784313 49346540 ~ 49361234 (-)
LOC110486687 LOC106601611 other upstream 914861 49486817 ~ 49504819 (-)

Expression


Co-expression Network