LOC110486647 (LOC106601548)


Basic Information

Item Value
gene id LOC110486647
gene name LOC106601548
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 48598978 ~ 48622758 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941351.1
CCCCGTCTTGTCCTCCCGCTCCTCCGCTCCAAAAGCAACCAGAAGCTATTCGTGTTTAGGCTACAGGCGGAGTTTTTGAGAACTGGGAAGAATTTGACAAACTTTGTTGATCCCAACGTAGTCTAAACGGACCGCAGCGCTTCGCTGCCAGTCGTTATAGAGACATCGATTAGTTTACTGTGTATGTCGacttcaatttaaataaattacagTTCCTCTTTTCATGGAATATGAAGAACAACGTCAGGAGGATGAGATCTTGACCGAATCATGCATagatatttattttttcttttatCAAACATCGCGTTGTCTGTCTTGTTTAAAGCGCGGTTAGGACGGAGCTGTTTTTgcatatttattttttcttcccATCGTTTTTTAAAATGATTGTTGTTTAATTCAAACGGACATGGCTAACTGACATAATAGacgtttttttaaatgattgttGTTTAATTCAAACGGACATGGCTAACTGACATAATAGACGTTTTTTAAAATGATTGTTGTTTAATTCAAACGGACATGGCTAACTGACATAATAGATGTTTTTTAAAATGATTGTTGTTTAATTCAAACGGACATGGCTAACTGACATAATAGATGTTTTTTAAAATGATTGTTGTTTAATTCAAACGGACATGGCTAACTGACATAATAGacgtttttttaaatgattgttGTTTAATTCAAACGGACATGGCTAACTGACATAAtagatgtttttttaaatgattgttGTTTAATTCAAACGGACATGGCTAACTGACATAATAGACGTTTTTTAAAATGATTGTTGTTTAATTCAAACGGACATGGCTAACTgacataatatttttttttttgtgacgtGGGAAGTTAATTTGAATTGAATATGAAAACTTAACTTTTCCATGTAAACCAATTTTGAGAGTTTTCCACTTCGCCAACTCTCTCGGACCATTAGTCTATAACCAATGTGGTGTCAACTGGAAGGACGCGTGGTCCGGATCTCACCTAAACGTTGATACGTGTTGGGAGTGATGCACTGGCTTCCCCTGGTTGCCATGGTGATCGCCTCGGCCCTGCCCTTCCCtcacagccctgtgactagtacTGTTGCTGCGATGACGGAGCCTGGCAGTAGCCTGGACGACCACACAGAGGACATCGATGACTCTTCCAGTCACTCCCCCGGATCTTACTCCACACTTCCAGCTCCTGAGGCCTACAATGTGGACTACAAGGACTACAATAACCCCTCCATAATTAAAGAGGAGGTGCAAGCTTTGAAAGGGAAGCGAAAACAACAAAGTTATTTGTCAAAAAGCAATTTTCATACAGAAAACACGAACAGCGTTGGTTTAAATAAATATTCTAACACTGATGGAGGAAAACTCAGGAGCACCAATGGCAGCAGTCATCAGGACTACCCCTCCCAGGAGAGCTATGTACTAGGGGACTATAAACCAGACAGCAGCAGAGCTGGTGATGACAGCAGCTTTAGAGACATGGCTCAGAAGGAAAACCATCATCACTCTCTAGACCCCAGGACCGATGAACAGGATCTCAGACCTCCCAACATGTATGTGGTGGAAACTTACAAACCTTCCACTAATGCTGGACACCACAGTAAAACTGGGCCAGATCCCTCCAGTCAGAGGACCCCGCAGAAAGCAGAGGCTAGGACAGAGAGCAGTgataacaggggagaggaggggatggagggtgggCCTGGGGCAGGGGCTGGGAAAGGTCCGGATCTGTCAGAGGAAGGAATGGAAGTAGGACTAGGGTTAGGGCTGGGTCAGGGGCTGGGAGGTGTAAAGGAGAAgcaagagctgctgtttttagaTGCACACCCACGGgtccttttctcttcctctcctccagagCACCCGCCCCTCCTTCTCATGCTGGAGTCAGGCATGTTGCCCATagaaggagaggacaaggaggaagaggaggaggaggaggaagtgtcgGACGCAGACGGACACATGGAGGGTCATGGGGACCGAGAGATGGACGGGAGTGTGCCGCTGAGCTGGGTGGACACTCTAAGGGGGGCCAGGGAGCCCCCTCGCCCCGCCCCCAGGCACAAGCGCTCACACTTGCCCCACACCGGGCGGGGTGAGATGCCGGTGTGTGAGTCGGAGAGCGTGTGGGTAACGGACAAGACGACGGTATTCGACGATAGGGGTAAAACAGTCAACATCGTGCCAGAGATCAAGACAGTCAAGGGGGCGCTGAAGCAGTACTTCTATGAGACTCGCTGCCGCCAGGAGGGGCAGCAGAGGGGCGGTGGGCCGCAGCGGGAGGCAGGGGGGGCAGGGGCCTCGGCAGCAGGAACAGTGACAGGACCCGTAGGTGTGTCCGGGGCCAGCTGCCGGGGCGTGGACATCAGACAGTGGGTGAGTCAGTGTAAGGCCAAGGACACATATGTCCGAGCCCTCACTGTTGACAACAACGGTCTGCAGGGCTGGAGGTGGGTCCGCATCAACTCGTCCTGCGTGTGTGTCCTACTGTCCAGAGTAACCAGGAAAAACAGAGGAAGGGAGTGAGGGCAGGAGATGGAGGAAAGGTGGAGAGGATAATGTGGAAGAAATGTTAACACAGATAATGCTTGGAACATTGGATGTAATGTCAATTAGACAGTAGGTGTTACTTTATAGGCCAGGGtgcctcttatccagagcgacttacattaGTGCATTCTTCTTATGATAgctgcactcttacaaaaaaaagggttccaaacgggttctttggctgtccccataggagaaccctttttggttctaggtagaaccctttttgaggttctatgtagaaccctctgtggaaagggttctacatggaagtcaaaagtgttctacctggaaccaaaatgggttcttcaaagggttctcctatggggatagccaaagaacccttaggttctagatagcactttttttaAAGAGTGTAGGCGAGACAACCCCTCCACCCATCACGGGCTCAGTGAGAGTGactacacaaaaacaataaaacctCAACAATACAACTTAGGGAAAACTATCATATCAAAACAGTGATTTAAAAAAAGTACTGTTTGTTTCACAATTGTTTCATATCATACATGTTATTGCtgagtaatactgtatgtaagCATGAGTTTTAAATTAATATATTTCTTTATATATGTGTACAATATGTGATCAGTATGCTTTTATGTATGAAAGTATGTATATTTATAGAGAAAGGTATGTGGAAAGATAGGTTTGTTGTTGTTACATGATTCCAGCCTCTGGCGTCTGGCCTCTGCTCTGAATGGGAGAGGAAGGGACTGGCAGCACCTAGTGATTTAGCCTGATACTCCTCAACAATCCATACTGAGCACTGACCATCCCCAGTCCTCCTTTGTGAAGTCTCACAGAGAACATtatcactgagtggtttaatagtaAGATAGAGAGGAGAATTGAGCCATGTATACTGTGAGCACAATGCTGGGTGTCATCATGATGCCCATATTGTTGTCATGAGAGCAACAGTCCATTTACAGTGTAGCCAGTCATATGTGATCAGAACATTTGAGTGACCAATAGAAACCATGCAGCAGTGTGACAACCACAGAAGCATTTTTATCTCTATCTCTGCCTGTAGTTAGATCATTAGATGATTGAAGAATTCCATTCGCCTCAGTTTGCAGTTTGAACTCTGCACTCTATAGTATATGCAGTACAACATATTTATACATCTGGCTTTTTGTAATACATGTATGTATATTGTAAAGGCCTGTTTCTTATTCCATAAGTAAAAGATAAACTATTATAACTTATTTTATCATGATTTTTATGCATAATGGTCTTTCCCGGCAAGTGTCAATGGTGTGATCTATcggtgtgtgttgtctctctttctgtcatatacacatacagtattcaCATGCTGAACATTCTTCTCACAAATACACAAAccactgcctctcctccccttaCACACGCTCCTGTTGTCTACACACGTGCCAACCCCAGGTACACAAAGTGAGAACACACACATTGGGATGTGTTGTACAACGAGTCCACTTTATTTTGTCTTTTTATCACCATCATCTTCATCACTGTTTATTTTGCAGGTGTTATTTTAAATTTGTATTATCATCTTCGTCATTCATATTATTTTTTTTCAATCATAACACAATTTGTTTTCaaaatgtacacatacagtagCATATCTTAATGACCATTTTTAATGTTTCATATTTACTTTTCAAATTAGGTCAAATTAAATGAGTAAGAATTAAGTATTAAATGAACATGTACATACAATTAttcaatacatacatacatacataatgaaaataaatatagttatcataaaaacataaaaataaaaata
>TU1348384
AACGAGTCCACTTTATTTTGTCTTTTTATCACCATCATCTTCATCACTGTTTATTTTGCAGGTGTTATTTTAAATTTGTATTATCATCTTCGTCATTCATATTATTTTTTTTCAATCATAACACAATTTGTTTTCaaaatgtacacatacagtagCATATCTTAATGACCATTTTTAATGTTTCATATTTACTTTTCAAATTAGGTCAAATTAAATGAGTAAGAATTAAGTATTAAATGAACATGTACATACAATTAttcaatacatacatacatacataatgaaaataaatatagttatcataaaaacataaaaataaaaatacacacattttacaAATTGTTCCCCAGGCTTTCATCCTCATAGGTTAGATTTCTACAGATATATGTGTATCATCTTCACCCCCCAAAGTTGacttcaatgtcatcttggttgtTTGACATGCATCGTAACACAGAAGCTAAAGGTTTTTCTTGACTTCCAACAGTCTCTTCTCACCTGGATCTCCTAATCATCCTTCCTCTCTTGGTTTCTGTTATGGCTTGCGTGCAGTAAATGAATCGTCTCCAACCTCTTTTCTTCTGGTCACTTTGACTGTTTTATCTCACCTTCGTCACACCTCCATCTTTCCCCTCGTCTTCCAGGGGCACCCAATGAACCTGAGCTGATGATGAGAGCCGTAAAGTTCACCACATCTAGAAAGCCATTACCCTGGGCTTTGTACTAGACCTGCAGTATGTAACCTGGCTTCAACAACATGTCCCCACACTCTAATTTAACTGGCTTTAGTGGATTCCTACAAATGACTAAATTACATCACAGCCATTTAACACAATGCCTGTGTGGCCCCCTATCCCATCGTATCCCCACTGCTGGGGCCCCCCATCCCATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941351.1 False 4365 mRNA 0.43 2 48598978 48622190
TU1348384 True 892 lncRNA 0.37 1 48621867 48622758

Neighbor

gene id symbol gene type direction distance location
LOC110486644 LOC106601551 coding upstream 58491 48532510 ~ 48540487 (+)
ifi35 LOC106606925 coding upstream 92770 48500511 ~ 48506208 (+)
LOC110486640 LOC106601555 coding upstream 100303 48496613 ~ 48498675 (+)
LOC110486639 rund1 coding upstream 105459 48488445 ~ 48493519 (+)
LOC110486632 LOC106601556 coding upstream 112593 48475804 ~ 48486385 (+)
LOC110486650 akts1 coding downstream 76013 48698203 ~ 48704379 (+)
LOC110486653 LOC106601538 coding downstream 125825 48748015 ~ 48796028 (+)
LOC110486658 NA coding downstream 335587 48957777 ~ 48959202 (+)
LOC118938637 NA coding downstream 335999 48958189 ~ 48958276 (+)
LOC118938636 NA coding downstream 336232 48958422 ~ 48958510 (+)
G1182359 NA non-coding upstream 34171 48563817 ~ 48564807 (+)
G1182350 NA non-coding upstream 61918 48536827 ~ 48537060 (+)
G1182344 NA non-coding upstream 69545 48528914 ~ 48529433 (+)
G1182342 NA non-coding upstream 78529 48516581 ~ 48520449 (+)
G1182341 NA non-coding upstream 82695 48516084 ~ 48516283 (+)
G1182416 NA non-coding downstream 39935 48662125 ~ 48662517 (+)
G1182422 NA non-coding downstream 43027 48665217 ~ 48665595 (+)
G1182449 NA non-coding downstream 102981 48725171 ~ 48725414 (+)
G1182460 NA non-coding downstream 117638 48739828 ~ 48740040 (+)
G1182463 NA non-coding downstream 121017 48743207 ~ 48763258 (+)
G1182354 LOC106601550 other upstream 37354 48556014 ~ 48561624 (+)
G1182153 NA other upstream 476403 48119613 ~ 48122575 (+)
G1181955 NA other upstream 855914 47742361 ~ 47743064 (+)
G1181636 NA other upstream 1049430 47549279 ~ 47549548 (+)
tmem100a LOC106606948 other upstream 1128966 47468012 ~ 47471205 (+)
G1182541 NA other downstream 324559 48946749 ~ 48947969 (+)
G1182555 NA other downstream 355810 48978000 ~ 48981403 (+)
G1182595 NA other downstream 441595 49063785 ~ 49065142 (+)
G1182629 NA other downstream 492785 49114975 ~ 49118697 (+)
LOC110486671 LOC100335037 other downstream 578796 49198846 ~ 49202693 (+)

Expression


Co-expression Network