LOC110485203 (ppfia3)


Basic Information

Item Value
gene id LOC110485203
gene name ppfia3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 48623806 ~ 48665589 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941350.1
GTGAGAGCTGCGAGTTTGTTTCTTTAAGACCCAGCACCTTTTTAtccgagggagggatggatggagaatgaggagagagagaaagacgggggTTGTTTATGGTGAGGTGTAACGTCGCTCGCGCCCAGTGCCATCGTTTACATGtgtgagaagggagaggggagggggttgcTTGCTGGCAACTGGGGTTTCACGGCGATACGACTTTTAACCGCGAGATGCCCGGATGGGGTAAATGGGAATTATGTATTTTTTGCTTTCGACGATGACAAGGCTGCTTCTCTCATCTGTCTGAAGACCACCCTGGGGTGTCCAAGGCCCTCCACTACACCTGCCCTCCCTCTTGCCCCCTCCCTAAACTCCTAGACACCACCATGGACTCCTCCTATCTCGTCCTACTACTCTAGACCTTGCCTTGCCGCACCCTAAAGGTACCTCACAATTACCTGGGCCCTGTCACTCAGCCAGACTCACTGAGACAACCAATCAGTTGTTATCACCACAAGCAGAGAGCCAATCAGGTGTTTGCTAGACACAGCAGAGCTATTCCTATTGTAGCAATACATCCAAAGGAGCTAATTCGGTGAAGCCAGGAAGTAGAGATGAGGAAGTAGCAAGGTACAGAGTGACAAGCCGTTAACCAACCAAACACAGGCTTGTTAGTGATGACTGTGACGTCTTATTCATAGGGAGGTGaggtacagaggagagagaagggtaacAGAGTGCCACCATTCTGCTTGCCTGTCAACCAACCTCTCTCACATAGTGACAGGAGAAAAGGATAAGGACACAAACATAAGAGAGAGACCAAGGGCCAAAGCtaggcagagagaaatagagagagagagagacaaaagagaatAGAGTGCCCTTCACACCTTACCTCATACAAGCATACACACTTGAAACTAAATTCTGTGGGCTCCTTGAAGCAAATTCTCCCAGAACAATCCCACAATCCCACACTCTCCACCGACACCCACCAACTTTCAGCTAACACCCCACACACTCTCCGGCCTCAAGATGATGTGCGAGGTGATGCCCACCATCTCTGAGGATGGGCGTGGCGGGAGTGGAGGAGGGCCTTCCTCTCCGGGAGGGAGTGGCGGGGGAATGGGAGGCGGTATGGGGGGTGGGTACGGGGGCAGAGGGGAGCCCCGGGGCGGAGGTGACGAGGGGGGCAGCACAGGGAATCTGGAATCTCTGATGGTGAACATGCtgacggagagggagaggctgcTGGACAGCCTGAGGGAGACCCAGGACAGTCTGGGGACAGCCCAGCTTCGACTCCGAGACCTGGGCCATGAGAAGGACTCCCTCTCGAGACAGCTGTCCATCGCCCTACCACAGGAGTTTGCAGTGCTGACCAAAGAGCTGAATGTCTGCCGGGAGCAgctgctggagagagaggaggagatagcaGAACTCAAGGCAGAGAGGAACAACACacggCTGCTGCTGGAGCATCTGGAGTGCCTGGTGTCTCGTCATGAGCGCAGTCTGAGGATGACAGTGGTGAAGAGGCAGGCCCAGTCTCCTGCCGGGGTCTCCAGCGAGGTGGAGGTCCTCAAGGCCCTCAAGTCCCTGTTCGAACACCACAAAGCCCTGGacgagaagGTGCGAGAGAGGTTACGTGTGGCTCTGGAGCGAGTGACTGTTTTAGAGGAAGAGCTGGAGTCCTCCTCAAATGAGTGCCATTCTCTACGAGACCAAATCAAAAGACGCCAACAAGGCTTAGAAAATGGGAAAGAGCGGCTGCCCAATGGACCCTCCTCCATCCTGGAGGATggagagattgacagagagagacagagagaaacagagatagagcGGCAGAGAGCAGAGCTGGCCCAGCTGAAAGAAAGACTGGCCCTCATGTGCAGACAGGTTGGGGAGATCGAGGAACAGTTGACTGCAGCTaggagggaggtgaccaagtcAGAGGAAGCCAATCAGAAACTGCAGAGGGATGTGAAGGAGGCTCTTTGTCAGAgggaggacatggaggagagaaTAACTACTTTAGAACGCAGGTACCTAAGTGCCCAGAGGGAGGCGACGTCTCTCCACGACATTAAAGACAGGCTGGAGAATGACCTGGCCAGTAAAGACTCCCTCTACAGGCAGAGTGAGGAGAAGAACAGGCAGCTCCAGGAGCGTCTAGACGATGCCAAGCAGAAGCTGCAGCAGACCCTGCAGAGGGCCGAGACGCTGCCTGAGATAGAGGCCCAGCTCGCCCAGAGAGTGGCTGCACTCAACAAGGCTGAGGAGCGTCATGGTAACTTTGAGGAGCGACTGCGACAGATGGAGGCGCAACTAGAGGAGAAGAATCAGGAGTTACAGAGGGCGAGGCAAAGGGAGAGAATGAATGATGAACACAACAAGCGTCTGTCTGACACGGTGGACAAGCTGCTTTCTGAGTCTAACGAAAGGCTTCAGCTCCATCTCAAGGAGAGGATGGCTGCTCTGGAGGACAAGAATGCTCTCTCTGAGGAACTTTCTAACATGAAGAAGATCCAGGACGACCTTCTAGCAAACAAGGACCAGCTGATAGCCGAGCTGGAGAGGATTCAGCTGGAGTTGGACCAGCTCAGACTGAGACCCGGCGGGTCCTGCTATTCCaggtctctccCTGGCAGTGCTCTGGAGCTGAGGTACTCCCACGGGGGCGGCTCCCTCCCCACGGGCTCCACCGCTCACCTGGATCACTACGGTAACTCCAACACCGTGGCCGTGGTCAGGCGGACGCATCGCGGGCGCTGGAGCACAGCCCGGGAGGACACCAGcaagtACGGGGACTGGGACAGTGGGTCAGCGCTGCTGAGGACCGGGTTTGAGGGGGGTGTAGACCACGGTTGCTCTGACGATGAGGACGACAGAGAGACACTGTTTGGCTCGGAGCTGCTGTCTCCCAGCGGACAGACTGATGTCCAGACACTGGCCATCATGCTGCAGGAACAACTAGAGGCAATCAACAAGGAGATCAAgCTGAtccaggaagagaaggagagtaCAGAGTTGCGGGCGGAGGAGATCGAGAgcagggttagcagtgtggctcTGGATGGTTCCCCCATCCCACCCTCCTCCCTGGGGAGGGACAGTATGGGACGCGGCTTCATCCCTCaatccctcacctcctccaccctggcctccccttctccccccagTTCTGGGGTCTCCACCCCTCGCCTGTCCCACTCCCCTCACCgcgagacagatagacagAACAACAAAGAGGATGATCGATCCCTTGCCCTTCTTgactccacccctccacccacccCCCGAGCGCTGCGACTAGACAGGATGACCCTCACCCACCCAGGGGCCATGATGGACGACCCCAGGGAATTCCGCAGtctgtcagCAGACGGCAGCAGTTCCAACAGCAGTCAGGACTCTCTCCACAAAGCCAGTAAAAAGAAAAGCATCAAGTCTTCCATCGGCCGCCTTTTTGGGAAGAAGGAAAAGGGAAGGATGGGCCCGGCTGGGCGAGAGTCTGCCTCTCTGGCCTCTACGCCTTCTGAGGACCTGGGTACTGGGGATTCTATGGGACTGACCAAAGGAAGCATGACAGGAACTGTTGACAACCGCCGCAGCAAAAGGAAacatgAGCTGCTGGAGGAGGCGTGTCGTCAGGGCCTTCCCTTTGCATCCTGGGATGGACCCACTGTGGTCTCCTGGCTAGAGCTGTGGGTGGGAATGCCAGCATGGTACGTGGCAGCCTGTCGTGCCAACGTGAAGAGTGGCGCCATCATGGCCAACCTGTCTGACACAGAGATCCAGAGGGAGATTGGCATCAGTAACCCCCTGCACCGCCTCAAACTGAGACTGGCCATCCAGGAGATGGTGTCCCTCACCAGCCCATCTGCCCCGGCCAGCAATCGCTCTTCGACCAGTAACGTGTGGATGACCCATGCTGAGATGGAGTCGTTAAACGCAGCCACCAAACCGGAGCTGAAAGAGATTAGCTGGGATCAGATCCTGGCCTATGGGGATATGAACCATGAGTGGGTGGGTAATGACTGGCTCCCCAGCCTGGGTCTGCCCCAGTACCGCTCCTACTTCATGGAGTCCCTGGTGGACGCCCGCATGCTGGACCACCTGACCAAGAAGGAGCTGAGGGGACAGCTCAAAATGGTGGACAGCTTCCATAGAGTTAGTTTGCATTATGGCATAATGTGCCTGAAGCGCTTGAACTACGACCGCAAAGagctagagaggaggagagaagacagcCAGCACCAGAACAAAGATGTGATGGTGTGGTCCAACGAGCGTGTGATGTGCTGGGTGCAGAACATCGGGCTGAAGGAGTACGCTGACAACCTGACAGAGAGCGGGGTCCATGGGGCCCTCCTGGCTCTGGACGACACCTTCGACTACACAGACTTGGCCCTGCTGCTGCAGATACCCAATCAGAACACACAGGCCAGACAACTCCTAGAGAAGGAATACAACTCCCTCatctctatgggaacagagagaaGACCAGATGAGGATGGGACTAAGACGTTTACCCGCTCCCCTTCCTGGAGGAAGATGTTCAGGGAGAAGGACCTTAGGGGGGTGACCTCAGACTCATCGGAGAACCTCCCCGCTAACTTCCGTGCCTCCGCTATCTCCACGCCCTCTGTGACCCTGAGAAAGGTTCAGAGTGACGtGAACTCTGGGCCTCGCGGTGAGGCAGCCTCAGTCAGGACATACTCTTGCTGAAGGACACGGAGGGCCATGGTGACTGGATCACGGCTGGACTGCCCTCCTCTCATTCATTCACAGGAGGGGAAATCAGCAGAGAAGCAATGaatatatacatttattaaaTATAAATCTATTGGTCTGACCATTCTGCAATAACAGAGATAAAGAAGAAATGACTGAGATGGAGAAACAACAAAGGGAAAAGAACATGAAGAATGTATGAAATATTGACAGGATATATACTGTACGTACATGGATAGAGGGGTAGGATGAGGCAGGACGACTGTTTTATCTCTCTTTGTTCTGTCTCAATATGTGATTGTGCGATGTGGAGTTGTgtgctgaggaggaggagactgataTCCAATGTCACCCATTGTGGCTCTCTATCTGTTAGCTTCTATGGTGCTGTCAGATGTTCTCTTAAGTTGGTTAGAGTGCTGCAGTAAAACCATGTCCCCATTCAGGCCGCCATCTTGGCTCCAGCCACATCAGAGGGGCAGCAAGCCGCTCCTCTACTCATGGTTTGTCCATTGGCACCTTGAAAGCTGAGAGGCTCTAGTGTAATCTCTTTTGAATGGAATCTATTGTGGAGATCAAAGGCCGGGCCACAGCAGCAAGGATACGATAGGATGGGGGGCCACAGCAGCAAGGATCCGATGGGAGGGGGGGGGCCACAGCAGC

Function

symbol description
ppfia3 Acts upstream of or within vasculature development. Predicted to be active in presynaptic active zone. Orthologous to human PPFIA3 (PTPRF interacting protein alpha 3).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: liprin-alpha-3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941350.1 True 5394 mRNA 0.55 32 48623806 48665589

Neighbor

gene id symbol gene type direction distance location
LOC110486646 LOC106601550 coding downstream 51741 48544179 ~ 48572065 (-)
LOC110486643 LOC106606926 coding downstream 93811 48522069 ~ 48529995 (-)
LOC110486641 bcat1 coding downstream 108896 48506263 ~ 48514910 (-)
LOC110486634 LOC106601558 coding downstream 148085 48451625 ~ 48475721 (-)
LOC118938628 NA coding downstream 177076 48446637 ~ 48446730 (-)
LOC110486648 nucb1 coding upstream 4642 48670231 ~ 48683477 (-)
LOC110487552 LOC106601568 coding upstream 18393 48683982 ~ 48686124 (-)
LOC110486649 LOC106606880 coding upstream 23439 48689028 ~ 48697978 (-)
LOC110486651 LOC106601513 coding upstream 40124 48705713 ~ 48724776 (-)
LOC110486652 LOC106606918 coding upstream 65550 48731139 ~ 48739071 (-)
G1183319 NA non-coding downstream 1050 48622211 ~ 48622756 (-)
G1183318 LOC106601548 non-coding downstream 2202 48619001 ~ 48621604 (-)
G1183224 NA non-coding downstream 104099 48516721 ~ 48519707 (-)
G1183222 rpl27 non-coding downstream 125209 48496708 ~ 48498597 (-)
G1183223 rund1 non-coding downstream 130209 48490813 ~ 48493597 (-)
G1183353 NA non-coding upstream 60013 48725602 ~ 48725877 (-)
G1183354 NA non-coding upstream 60403 48725992 ~ 48726228 (-)
G1183357 NA non-coding upstream 64118 48729707 ~ 48730020 (-)
G1183361 NA non-coding upstream 74728 48740317 ~ 48740531 (-)
G1183362 NA non-coding upstream 75649 48741238 ~ 48741469 (-)
G1183225 NA other downstream 152823 48435826 ~ 48470983 (-)
G1183196 NA other downstream 234088 48379267 ~ 48389718 (-)
G1183192 NA other downstream 246840 48364056 ~ 48376966 (-)
G1183190 NA other downstream 258706 48361598 ~ 48365100 (-)
G1183126 NA other downstream 363817 48259524 ~ 48259989 (-)
G1183337 NA other upstream 2199 48667788 ~ 48668082 (-)
LOC110486656 syt3 other upstream 232090 48875671 ~ 48936482 (-)
LOC110485205 LOC106597701 other upstream 307594 48959315 ~ 49053966 (-)
setd1a LOC106585476 other upstream 690789 49346540 ~ 49361234 (-)
LOC110486687 LOC106601611 other upstream 821337 49486817 ~ 49504819 (-)

Expression


Co-expression Network