LOC110487552 (LOC106601568)


Basic Information

Item Value
gene id LOC110487552
gene name LOC106601568
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 48683982 ~ 48686124 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036942627.1
GAGGAGGTTCGGGCTCAGATTCACACCAGCgccacacaggaacacacacatacagaggggCGAGGAAATAAAAGGACATCCAACATAGCAGTGACAAGAAGAGGGTTCAATTGAGTTGGATTAGTTGCAGATTTTCAGCACACACATTGGTCCTACATTCTCTCTCCTTACACTGACAGAGTAACATTGACTTGTTGTATCCCACTTTCTGGACCGAGAGGAACACAAACCCACCTAGGTAGTTGTGTGTGTGGGCTGAGCTGAgggatgtctgtgtctgtgtctctgtggtgTGAGGAGGAAGTCCGAGGCCAGCAAGGCCAGGGAGCCCAGCAGGGCCAGGCCAGGGGCCATTCACAGCTCCGGGCCCCCTGGGACCCCAGTGTGTCTGGGCAGCGGATCATCCAAAGGCTGCTACAGGTGGAGGAGAGATATCTGCCCTCCGCCCTCTACGTCGCCCTCATTCAGAGAGATCCGGAGCGCAGAGAGGAGCTCGCCAAGTGGGCTATGGAAGTATGCTGTGAGCGCGGCTGTGACGAAACAGTgtttcccctgtctgtctctatgttggACTGcttcctgtctgcctccctgtctctccctgtctcaccctACTGCCTGGCTGCAGCCTGCATCCTCATCGCCTCCAAACTAACAGAGTGTGACACAATCTCTGCTGACTCTCTTTGTGCTGCAGCTGAGTACAGCTTCCTGCCCTCCAACATACGGGAGATGGAACGTGTCATCCTTGCGACTCTTCGATGGGACGTTGCTGCGGTAACCGCTCAGGACTTCATTCCACATTTCCTTCCCCCTGtaggggagaggaaggatggaaagacagacacagaggagttCTTCTCCACACTGCGTCGGCATAGTGACACCCTGGTTGCCATGTGTGTCTGCGACTACCGTTTCCTGGGAGCCCCTCCATCCCTGGTTGCTGCGGCAGCACTGAACTCTGCCCTCCGGGGTTTGGGCAACAAGGGTCCAGGTCATCTGGGTCATATGAGTGCTACGCTTGCAGAACTGTGTCAGACTGACCTGATGGTGTTGCAGTGTTACAGTGAATTGATAGAAGCTGCCCTCAAACAACGGCTCAGAGGTGGACTCCAAGACAGTGccatggagaaggatggagaaatAGAGGATGAAAGAGCAGGCACTCCTACTGATATGAGAGAGATTGATTTCTAAACACTAAATTGTGTGAgacaaagtgcaaatcaatcaaagTCCTGCATTTAGCTCATCAGTGAAACTGATATAAACTCTTTATGACCTCAAATGCTCTACAATTTATTATCATATTTTGAAATTACTTTAATTTaatattgtttatttattaattGTGTTTATTGTGCCatatttattatctatttcatgACCGTGAttctttgtcattatgttgtTGATACTATGTCCTTAATCTATTATTTATCCATTTATTTATTATGTGCAATTACATAatgttaatttatttcaattcacCATTGTTTGTGTTTGTACGTGAAGTGACAAGGTAATTGATGAAATAATATACATAGCTATCtattttaattaaataaatacat

Function

NR:

description
G1/S-specific cyclin-D2-like

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036942627.1 True 1577 mRNA 0.47 4 48683982 48686124

Neighbor

gene id symbol gene type direction distance location
LOC110486648 nucb1 coding downstream 505 48670231 ~ 48683477 (-)
LOC110485203 ppfia3 coding downstream 18393 48623806 ~ 48665589 (-)
LOC110486646 LOC106601550 coding downstream 111917 48544179 ~ 48572065 (-)
LOC110486643 LOC106606926 coding downstream 153987 48522069 ~ 48529995 (-)
LOC110486641 bcat1 coding downstream 169072 48506263 ~ 48514910 (-)
LOC110486649 LOC106606880 coding upstream 2904 48689028 ~ 48697978 (-)
LOC110486651 LOC106601513 coding upstream 19589 48705713 ~ 48724776 (-)
LOC110486652 LOC106606918 coding upstream 45015 48731139 ~ 48739071 (-)
LOC110486654 LOC106606919 coding upstream 138344 48824468 ~ 48831876 (-)
LOC110486655 LOC106601541 coding upstream 172124 48858248 ~ 48872847 (-)
G1183330 NA non-coding downstream 27230 48656351 ~ 48656752 (-)
G1183319 NA non-coding downstream 61226 48622211 ~ 48622756 (-)
G1183318 LOC106601548 non-coding downstream 62378 48619001 ~ 48621604 (-)
G1183224 NA non-coding downstream 164275 48516721 ~ 48519707 (-)
G1183222 rpl27 non-coding downstream 185385 48496708 ~ 48498597 (-)
G1183353 NA non-coding upstream 39478 48725602 ~ 48725877 (-)
G1183354 NA non-coding upstream 39868 48725992 ~ 48726228 (-)
G1183357 NA non-coding upstream 43583 48729707 ~ 48730020 (-)
G1183361 NA non-coding upstream 54193 48740317 ~ 48740531 (-)
G1183362 NA non-coding upstream 55114 48741238 ~ 48741469 (-)
G1183337 NA other downstream 15900 48667788 ~ 48668082 (-)
G1183225 NA other downstream 212999 48435826 ~ 48470983 (-)
G1183196 NA other downstream 294264 48379267 ~ 48389718 (-)
G1183192 NA other downstream 307016 48364056 ~ 48376966 (-)
G1183190 NA other downstream 318882 48361598 ~ 48365100 (-)
LOC110486656 syt3 other upstream 211555 48875671 ~ 48936482 (-)
LOC110485205 LOC106597701 other upstream 287059 48959315 ~ 49053966 (-)
setd1a LOC106585476 other upstream 670254 49346540 ~ 49361234 (-)
LOC110486687 LOC106601611 other upstream 800802 49486817 ~ 49504819 (-)
LOC118938314 NA other upstream 851075 49537199 ~ 49544276 (-)

Expression


Co-expression Network