LOC110486649 (LOC106606880)


Basic Information

Item Value
gene id LOC110486649
gene name LOC106606880
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 48689028 ~ 48697978 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558409.2
AGACGTGCCACCACCTATGATTGGTTGATGTTCCTGACTGACGTATAACGTAGACGGTGCAGTCTATGAAAGCGGAAGTCTTCTTCTGACGACATTTGTTTTGGAAAAAAAAGGCTAGTGGAAGAAAAATGGAGCCAAAGGCTGAGACTAGTCACAAGctGGTGTTTGAGAAGGAGGGGGTTTACCTTCACACCAATGCCAAGAGGAGCAACCAGGACACCACAATCCCAGGATTCATCCGTATAGTGGAACGGGGTGGGGAGCCAGCTTTGGAGTGGAGCGCACTAGAGGACGAGGGCCGCAATGCGGCAGCTGTATTCTACACTAAAAAGGATggagaaggaggggtggaggacaCCAACTTTGACCCTGGCTACGAGCCAGACTGGGCAGTCATCAGCACAGTGAAGAGAGACCGAGTCAGAGAGCACCCCCCTGTCAAAGAGACAAGCCAGTGGTCGTTCTCCCTGCCTCTGTCGGAGCTGTACTCTCTGCGACGGTCCCGTTTCTCCCTGGGCCGTAACTTCCTGGTTTTTACCAGCAGGGGTGGCCACCCCCTACCTCCTCTGCACTTCCACAGGGGGGGCACCAGGGAGCTGTTGAGGGCCCTGCAGCGTTACATCATCCTGGCCCCATCACCTGTAGATGGTCGTCTCTTCCTAGCGTATCCCCATGACTCTGGGGCTCTCTCTCAGTCCTTTGATGAGCTGCACCTCTTTGACGATGGAAGCTCCGACCTCGTCTCTAGGTTTATCCAGGACCCTTATGCCACCACCTTTGGGGGATTCTCCAAGGTCACCAATTTCTTCAGAGGGGCTCTACGACCACCAGATTCCCCCTTCCACCCTCGTGGCCCTCAGGACCACCATGGGCCCCACTCAGCTGATGACGAACCAGGATTTGAGCTCATCACCTGTGGGGTGGAGCTTGGCCCTAAACCAGACGTAACCAGGGGACAGCCTCTCGACAAATGGGAGGAGTTCCTGGACCCAGAGGGGCGTGTGAAGGACCCACAGCAAATCAAAGAGCTGGTCTTCAGGGGGgGTATCACACCCTCCCTGAGGAAGGATGTGTGGAAGTTTCTGCTGGGTTTCTATCCCTGGAATAGTactgtgaaagagagggaggacatTCTGAGGATGAAAACAGATGAGTATTTCAGAATGAAGGTTCAGTGGAAGTCAGTCAGTGAAGAGCAGGAGATGAGGAACTCCCTCCTCAGAGGATACCGCAGCCTGATAGAAAGGGACGTGAGTCGGACGGACAGACACAACACCTTCTTCTCTGGCAACGACAACCCAGGCCTGACTCTTCTCAATGACGTGCTGATGACATACTGCATGTTCAACTTTGATCTGGgctATGTCCAGGGGATGAGTGACCTCTTGGCTCCTCTCCTTTTTGTCACTCAGAACGAAGTGGAGTCCTTCTGGTGTCTGACAGGTTTTATGGAGATGGTGCACCAGAACTTTGAGGAGTCTCAGGAGGCCATGAAGCAACAGCTCCTTCAGCTCAGCCTGCTGATGAAGGCTCTGGACCCTGAGCTCCTTGACTACCTGGACTCCCAGGACAGTGGCTCTCTGTGCTTCTGTTTCCGTTGGTTACTGATCTGGTTTAAGAGAGAGTTCTCCTTCGAGGACATCCTGTCCCTTTGGGAGGTTCTTTGGACTCGTCTGCCCTGTGAAAACTTCCATCTGCTGATGGCTGCTTCCATTCTGGAATCACAGAGGGGGGAGTTCATCGGCTCTGACCACGACTTCAACACTATTTTGAAGCACATCAATGAACTGACCATGAAGCTGGATCTGCAGACAGTCCTACGAGGAGCAGAAGCTAACTACCTACAGCTGGCCTGCTGCAAAGAGCTGCCGGTGAAGGTGCAGGAGGTCATTGGTCTGTACGTTCCCCCCAGCCCTGATGACGAGACGAGCCCAGAATCAGAGTCACATGAGACGCAGCAGCTTCTcagccaatcacaggcagcagctACAGAAACGAGCCAGTCAAGTAACAGCACTACTGCTGCAGCAGCACGCCCTCGCCCTACCTACCCGTAACTCTGAAGGACAGGGTGATTGACATGAGGAGAGAAAGCCATTAACCGATATGAGGTGTTCCATATAGGAATATATACGCTCAATGGCcagttatttgtttttattttttaggtacacccatctaggtACTGGGTCGGACACccttttgcctccagaacagcttgAATTCTTCGGGACATGGACACGTTGCTCAATTGATATCAAGGGACCTAATATGTGCgaaggaaaacattccccatGCCATTACTTTACCCTCCACCAGcatgtaccgttgacaccaggcaggatgggtccatggactcacgctgcttacaccaaatcctgactctgtcgTCAGCATGATGCAACAGGAATCGTGATttgtcggaccaggcaatgtttttccacttctcaattgtccagtgttggtgatcgcgtgcccactggagccacttcGTTTTTAgctgatgggaatggaacccggTGTgctcgtctgctgcaatagcccatccatgaAAAGGACAGAGTTCAGCGGTTCAAGATGGCGTTCTGCACACCGCTGTTGTATTgcgccgttatttgcctgttcgcttgcatgattcttgccattctccttcgacctctcatcaacgagctgttttcgcccacaggactgctgctgactggatgttttttgtttgtcgcaccattctctgtaaaccctagacactgtcctgcgtgaaaagcccaggagggtggtcgtttctgagatactggaaccggcgcGCCTGGCACCAACGATCATACCGCACTCAAAGTCGCTTAGGGCACTTGTTTTgcacattctaacattcaatggaacagtaactgaatgcctgtctgcctgcttttaTATAGGCCATGACACTCACTGCCTGTAGGAGCTAACCATTTTTGTGAATGGtgaggtgtacctaataaacgggCCATGTATTGTATATTGGATGATATGGGGCATAGGAGAGAGTGTTTGATAATGTACTGTAGTACATGATGAGGGTTGCAGACTGTTACCATCTCTGACAGACGGGGCATTAGAGTGAACGGTGATAggttgtattttcatgaatgtaaCTATCCCAAAATATTGAAATGGTCTACATATGCAGTGCTTTGTCTTTATATAAATACcgcaatacatttttttgtttccCTTAAGTATTTTGTGTGAATCCAAGTCATGTCCAGTCATTTATATTTCCATTTGTGTACCTGTCTCGTGAGAatttctttttttcatttttttcttccAAATTCTTCTTTGTGAAATGCTTCTATTTTAAAACTGTCTGTTAACTTGTTTTATCCCTTTCTTTATCTCAGCCCATTTGTCCCTTTTTTAATGGTGTATCATTGTGGTCTGCATTAGTTCCACCCTGTTGTTCTCCTGTTGTTCCTTCTATCCATGCTCTCCTTTCTATTGCTGTCCTTCTCACTCGAAGTAATACTAAATATAATATGAAGAATAATCTTACTGACAGAACATTACAAGTACTATAAAATGCCTTCCTATAGAGTGTTATACATGCAGTACTATAATGTTTAAGGTTTTTAACTACTGGTATTATGTCATAACAATATTTTCACTTATATGAAATTGCTGAATCTTACCAAATAAAgggtacaaaaacaataaa

Function

NR:

description
TBC1 domain family member 17-like

GO:      GO:0005097,GO:0032313

KEGG:

id description
K19945 TBC1D17; TBC1 domain family member 17

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558409.2 True 3691 mRNA 0.48 17 48689028 48697978

Neighbor

gene id symbol gene type direction distance location
LOC110487552 LOC106601568 coding downstream 2904 48683982 ~ 48686124 (-)
LOC110486648 nucb1 coding downstream 5551 48670231 ~ 48683477 (-)
LOC110485203 ppfia3 coding downstream 23439 48623806 ~ 48665589 (-)
LOC110486646 LOC106601550 coding downstream 116963 48544179 ~ 48572065 (-)
LOC110486643 LOC106606926 coding downstream 159033 48522069 ~ 48529995 (-)
LOC110486651 LOC106601513 coding upstream 7735 48705713 ~ 48724776 (-)
LOC110486652 LOC106606918 coding upstream 33161 48731139 ~ 48739071 (-)
LOC110486654 LOC106606919 coding upstream 126490 48824468 ~ 48831876 (-)
LOC110486655 LOC106601541 coding upstream 160270 48858248 ~ 48872847 (-)
LOC110486656 syt3 coding upstream 177693 48875671 ~ 48936482 (-)
G1183330 NA non-coding downstream 32276 48656351 ~ 48656752 (-)
G1183319 NA non-coding downstream 66272 48622211 ~ 48622756 (-)
G1183318 LOC106601548 non-coding downstream 67424 48619001 ~ 48621604 (-)
G1183224 NA non-coding downstream 169321 48516721 ~ 48519707 (-)
G1183222 rpl27 non-coding downstream 190431 48496708 ~ 48498597 (-)
G1183353 NA non-coding upstream 27624 48725602 ~ 48725877 (-)
G1183354 NA non-coding upstream 28014 48725992 ~ 48726228 (-)
G1183357 NA non-coding upstream 31729 48729707 ~ 48730020 (-)
G1183361 NA non-coding upstream 42339 48740317 ~ 48740531 (-)
G1183362 NA non-coding upstream 43260 48741238 ~ 48741469 (-)
G1183337 NA other downstream 20946 48667788 ~ 48668082 (-)
G1183225 NA other downstream 218045 48435826 ~ 48470983 (-)
G1183196 NA other downstream 299310 48379267 ~ 48389718 (-)
G1183192 NA other downstream 312062 48364056 ~ 48376966 (-)
G1183190 NA other downstream 323928 48361598 ~ 48365100 (-)
LOC110485205 LOC106597701 other upstream 275205 48959315 ~ 49053966 (-)
setd1a LOC106585476 other upstream 658400 49346540 ~ 49361234 (-)
LOC110486687 LOC106601611 other upstream 788948 49486817 ~ 49504819 (-)
LOC118938314 NA other upstream 839221 49537199 ~ 49544276 (-)

Expression


Co-expression Network