LOC110486654 (LOC106606919)


Basic Information

Item Value
gene id LOC110486654
gene name LOC106606919
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 48824468 ~ 48831876 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941375.1
CGTGGATTCTTCTCAAAGGCCCCACTCAAATCCCTAGACGACAGAAAAAAAGGAGTAACATCTGTTTATGCACATATTTCTGTTAAACCCCCCTGGAAAAAACAGAGATAGACGGAAGATAAAACACCTTTAAAAATGAAACATTAAAAGGAACAAATTGCCACTGGAGAAACTAAGCAAAGTCAACCTGGTTGAGGAATCCATCATCTTGGGATCAACATCTTCGGAGAAAGGGCACGGTCATGTCCCAGTTGCCATGCGCATCACCACGGTGACCTGCcttccctgcccctctcccctcctcctcctattggTCCAGCTGCTACTGCGGCTCCTCCTCTCTGGGCCAGAATTTGTAGAGGCCGCCTCCCCCTGTCCCACCCACTGCAGCTGCTCCAATCAGGCCAGTCGAGTCATCTGTACAAGACAGAGTCTGGATGGGGTGCCTGAGAGCATATCAGTCAACACACGATACCTCAACCTGCAGGAGAATTCAATAGAGgtTATCAAGTCAGACACCTTCAAGCACTTGAGGCACCTTGAGATCCTGCAGCTGTCTAAGAACAAAATCAGTCAGATTGAGGTGGGAGCATTCAATGGCCTGCCCAACCTCAATACGCTGGAGCTGTTCGACAACCGCCTCACCCTGGTCCCCTCACAGGCCTTCGAGTACCTCAGCAAGCTGCGGGAGCTGTGGTTACGGAACAACCCCATCGAGACGCTGCCGGGCTACGCCTTCCACCGCGTGCCCTCGCTGCGCCGGCTGGACCTGGGAGAGCTCAAGAAGCTGGACTACATCTCAGACGCCGCCTTCGTGGGCCTGGTCAATCTGCGCTACCTGAACCTGGGCATGTGTGGTCTGAAGGACATCCCCAACCTGACGGCCCTGATGCGTCTGGAGGAGCTGGAGCTGTCTGGGAACCGTCTGGAGATCATCCGGCCTGGCTCCTTCCAGGGCCTGGTGTCGCTCCGTAAGCTGTGGCTCATGCACTCGCAAGTGAAGGTCATCGAGCGCAACGCCTTTGACGACCTGAAGAACCTGGAGGAGCTCAACCTTTCACACAACTCCCTGCACTCGCTGCCCCATGACCTCTTCACCCCGCTGCACCAGCTGGAGCGGGTGCACCTCAACCACAACCCCTGGGTGTGCAACTGTGACGTGCTGTGGCTCAGCTGGTGGCTGAAGGAGACGGTGCCCAGTAACACTACGTGCTGCGCCCGCTGCCACGCTCCCCCCGGCCTGAAGGGCAGGTACATCGGGGAGCTGGACCAGAGCCACTTCACCTGCTACGCTCCCGTCATCGTGGAGCCGCCCACCGACCTCAACGTTACCGAGGGCATGGCTGCAGAGCTGAAGTGTCGCACGGGCACCACCATGACCTCGGTCAACTGGCTCACGCCCAACGGCACCCTGATGACCCACGGCTCCTACCGGGTCCGGATCTCCGTGTTGCACGACGGTACGCTCAACTTTACCAACGTCACGCTGAGGGACACGGGTCAGTACACCTGCATGGTGACCAACTCGGCTGGCAACACCACGGCAACCGCCGTGCTTAATGTCACTGCCGCCGACGTTGGCGTCAGCTACTTCACTACTGTCACCGTGGAGACGGTGGAGCCCAACGAGGGCCCGACAGTCTACGCGGGCGTCATGAACAGCCATAACGAGTCATACGTCATTACCCCGTCTGGCCACCAGTGGAGGGGGGGGCTCCCTACTACTGCCTCCTCCCTGTCAGCCTGGTCCTTGTCCTCGTCCCGGGCCACCCGGCCCACCTTTACTGTGCCCATCACTGCCGAAACGGGCTATTCTGGCCTTGATGACGTGATGAAGACCACCAAGATCATCATTGGCTGCTTTGTGGCCATTACCTTCATGGCAGCCGTGATGCTGGTGGTCTTCTACAAGCTGAGGAAGCAGCACCAGCTGCACAAGCACCACGGCCCCGCCCGCGCCATCGAGATCATCAACGTAGAGGACGAGATTGGCGCAGGTGCTGGTGGACGCGGGAGCGGCATCTCAGGGGGCGGCACCGTCTCTCGGGATGGAGGCGGAgggggaggagtaggaggagggcaGAGCCTGAGGATGCATCACCCGGAGATGGTCAACCTGCCCAACCTGGCCAGACAGGAACACCTCAACCACTACTACAAGGCCCACCACTTCAACAACAACATGATGGGCCTGGGCATgggcctcaacaacaacaacaacccctccctctccccctgttccCAGAACCAGAGCACCCCCAACTCCTGCGCACAGGGGCCCACCTCCACCAGTGGTGGCACCCCCACGGGTGGCTCGCTGCCCTCCCCTGTGCCCCTGCCCCAGCTGGGCATCCATAGCTCTCTGAAGGGGCTCATGGGGAAAGGCCAGAACCCTCAGATCGAGCCTCTGCTCTTCAAGAGTGGCTCCAAGGAGAATGTGCAAGAGACTCAgatctgagagaaagagagagacagatggaaaaagagagagagatgaagagacagaaaaacagggagatggaaggagagagtggaGTCTGATTGTACTATCCCCATGGCCATATTTCGATAGAAAGTGTAGGCAGGCAGAATATGAAATATTACATAGACACTGCTTTGTATGGTTagtgcatagagagagagagcgagagagaggagagattgtTCTCACACCTCTACTGTGTCTGCTCAACACCCGTCCAAGCATTAACATCTTCTGAGACACtccaagacacacacagacacacacagcccgACACAAGGACAGGAACATTCTATCAGCTAACACATACACAGTGCATTATGAGATTGGCAACTATGTGCCAAACTTGCGCATGTCTGTGCCAAAGTAAAAGCCCTCGCAATCTATATATCCATCCGCAGCATTCCCAGACTGAATCAGGTGACCAGGTTCAATACCCAGACACAATAAGAATCACCACGGTTATAACTAAATACAGATCACCTCGTATATTACCAGATACAATCCAAGTCACCATGTATATATAGAGATAAGATCTGAGTCACTATGTTGAAGTAGGCGGATAAGTGTTTGGGACTGTGTCAGAGCAGTACAGGGCTGCCCAGACGCACTCTGTGGAACAGGACAGAAAGTAAACCATTGAGCAGAACACAGTTTAGTGTCGGACAACAAGCAATGTGTAGGAAGAggaaacaacatcaacaacagttGTGTTTTACTTAGTGGGCTCCATCTCACTGTCTCCCCTCTTTCACACCTGACTGGCTACTCTCTTTAAAGGAGAGGAAGGTATATGGAGTGAATCGTCGTAAAAAAATAATGTAATAGCAAAAAGGACTACGAAAGATACAAATAAACTGTGAAAGTAcatattatatataaatatattttcattcGAATAAATAAATTATGAAGAATCTTTACCAAGTTTCTGACTAAATAGCCACAGCTTCTGAAGAATAATGAACTGCTGTCATAGCGGTCATCACTATGAAAACTTTGTTTGGCTAGAAACAAGATGGCCGACATTCTGTGCTGGAAAGGGATATATTGTAGTGGAGGCTATGGATGAGCAAGAGCTAAAATTGGAAACTGGTACAGTGTTTGATTGAATTTATTTTTGGCTTCAATTTTTGTAGCATCACAAAGCGTTCCCTCTCATGCGACATTTACATAAACAGGGTCATTGAAGAAGGGGGATCTTTACTCTCCATTtaatgagaacatatgaaataTGATTACAAAACTTCACCCTTTGATACAAACAATATGGATATtgtaatgatgataatgatgataattATAATAATTCAGTAAATGCTTATCAACCGTATACTGTAGATAGCTCTTAAAAGCAGATATAGGTTTAGCATGCTCTGATTCAAGTGGTAATATCTAAAATTGCAATGTGATCGGTTTCAACTTCATGCATTCAGTATATCTGTATGCAATATATCATGATATTGagaaattattattataattatcatcattattactattattattgttattattatcatacactgagtgtacaaaacattaggaacaccttcctaatattgagttgaagcccattttgccctcagaacagcctcaattggtcGGGGAATGGACTGCAAGGTAttaaaagcgttccacagggatgctgggccaTGTTGACTACATTGCATCCCACAGTTGTCAGGTTGGGtggaggaccattcttgatacacacgggaaaccgttgagcttgaaaaacccggCAGTGTTGCAGctattgacacactcaaaccggtgcgcctggcacctgccACCATACCCCGTTaaaattcaccctctgaatggcacacatacacaatccatgtctcaattgtcttgagGCTTAACAATCTGTCTTTAaactgactcctccccttcatctacactgattgaagtggatttaacaggtaatatcaataagggatcatagtctacacctggtcagtctgtcatggaaaaagcaggtgttcctaatgctttgtacagtcagtgtataggTGGCAGAGCAGCCTAGTACATCCTTATGAAAGTTATGTTTATAATTGATTCAGTGGGGAATGATTTGATTACACATGGAACGATGATGATCCCTTCAACCACCATATTGACTCCCAACAataggggatggtctgtgttccaCCAAACACCAacctgcagaaacaggaaatacATGGTACTCAAAATGGCTGCTCCCACATGGCATCCTCACAGCCCATGCCTCCTCAGAAACTCCTCTGTTTTGTACAACAACGCCAGTCTCAGCCGATCAGGACCCCTCGTTTTATTCTGCTGTGTAAAAGACAGGACATGAACCTTTGACGAAGACTGCCCGTTTGCAGAGGATTATATCAGAACTCAGTGTTCTCATGTGTGAATGGAATTCATGGCAGCAGGGAACTAAAGGAGGACAGCATTTTGAAGCGTTTGAAAGGTAAGAGAAACCTAttcaatgaaagagagagagagaaagcctagATGAATCATATGGTGATGGGTGATTTTGTTTTTTTAAGGAAAAGGacaaataaatgaaaaatatAGAAACGTATAGATCTCTTTAAAAAAAGCTATTATAAGTGTTttttcattttgtttttttatctaGTTTGATTATTTCCTTTttatctttttttaaatcaagtgTTATCTCAATTGTaatattgttattgttgttataaTTCGCTAATTACACTGGTTACAATTCTGAAAGATGTTCTGTCAGCAGAAGTCACATTGAAAAATTTAAATACCTGGCACACAAAATGGcggttgaactctgtgaaacttGGTGGCAttagtttttttgtgtttttttccatTGAATTGAAATATCCCTGTTTGTGTGTATCCCTTTGGCTAATACAGCTGTGCTTGAAATGAGACACACAGAA

Function

NR:

description
PREDICTED: leucine-rich repeat-containing protein 4B-like

GO: NA

KEGG:

id description
K16360 LRRC4B, NGL3; netrin-G3 ligand

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941375.1 True 5394 mRNA 0.48 2 48824468 48831876

Neighbor

gene id symbol gene type direction distance location
LOC110486652 LOC106606918 coding downstream 85397 48731139 ~ 48739071 (-)
LOC110486651 LOC106601513 coding downstream 99692 48705713 ~ 48724776 (-)
LOC110486649 LOC106606880 coding downstream 126490 48689028 ~ 48697978 (-)
LOC110487552 LOC106601568 coding downstream 138344 48683982 ~ 48686124 (-)
LOC110486648 nucb1 coding downstream 140991 48670231 ~ 48683477 (-)
LOC110486655 LOC106601541 coding upstream 26372 48858248 ~ 48872847 (-)
LOC110486656 syt3 coding upstream 43795 48875671 ~ 48936482 (-)
LOC110486657 LOC106595301 coding upstream 114852 48946728 ~ 48956570 (-)
LOC110485205 LOC106597701 coding upstream 129029 48959315 ~ 49053966 (-)
LOC110486659 LOC106601577 coding upstream 233455 49065331 ~ 49078168 (-)
G1183396 NA non-coding downstream 17320 48806938 ~ 48807148 (-)
G1183375 NA non-coding downstream 28451 48790151 ~ 48796017 (-)
G1183379 NA non-coding downstream 51597 48764009 ~ 48772871 (-)
G1183363 NA non-coding downstream 82376 48741813 ~ 48742092 (-)
G1183362 NA non-coding downstream 82999 48741238 ~ 48741469 (-)
G1183424 NA non-coding upstream 52113 48883989 ~ 48934491 (-)
G1183432 NA non-coding upstream 72352 48904228 ~ 48905481 (-)
G1183436 NA non-coding upstream 108496 48940372 ~ 48940591 (-)
G1183444 NA non-coding upstream 145657 48977533 ~ 48977865 (-)
G1183337 NA other downstream 156386 48667788 ~ 48668082 (-)
G1183225 NA other downstream 353485 48435826 ~ 48470983 (-)
G1183196 NA other downstream 434750 48379267 ~ 48389718 (-)
G1183192 NA other downstream 447502 48364056 ~ 48376966 (-)
G1183190 NA other downstream 459368 48361598 ~ 48365100 (-)
setd1a LOC106585476 other upstream 524502 49346540 ~ 49361234 (-)
LOC110486687 LOC106601611 other upstream 655050 49486817 ~ 49504819 (-)
LOC118938314 NA other upstream 705323 49537199 ~ 49544276 (-)

Expression


Co-expression Network