LOC110486658


Basic Information

Item Value
gene id LOC110486658
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 48957777 ~ 48959202 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005035576.1
GCCTTTTCCTCACATAGACTGGAGGGTCAGAACGTGGCCTGGTGATTGTGAAGCTGGACATTTTCGTCTTATTTGAATTAAACGATATAGCTAGATCGTTAATTTCCTCAGCAGTCATGTTTTATTTAGTTAGACAGTAAACGAATTCCCTCGatgtggctagctaacgttaacagcTTGCTAGCGAAGTAGGCTAATTGTAGAACGTATGCAGGAAGCTCATGTTGGCTAAGTAGTTAGCTATAGCTACTTAAACGTTTGTATGAAACTTTCAATTTATAATTTCAACTTGAGGTAAATCGAGTGTTAGGTAATTATTTAGTTTTTATTTAGCCTATACCCAAGAGGGTGAACCTTTCTATGGACATTGCTTAGCTAGCAAGTTACCTGGGGCATGGCATGTTGTCTGAAACGTCTCCTATGATGTTTTGCACTGGGCTCTGAAATTATGTGGCGATAAAGTTCTCTCTGGCTCTGACAGGCCCGAGTCTGAGGATGCTCGCGTCTAATGTAGTTAGTCTTGTCTGCTTGATTGCAAGTTGCAGATATTGTCCTTATGGGAGTCTTTTTCTATTGTCCAAAGGTTACGAGGCTGTCAGAACCCACAAGGTGACAGGGCTAAGTCAATACCAAACTACAAGATGATTCTTGGACCTCCACAGAAGATGTGTGGTGACTGCAGTCTGTTATtaacatggggtgagatcttCAATGGATAATTTAGGGGCCTGTTTTGCACAAGAGGCACTGTTTTACCTGTATTTCCAGCATTATCCAGCTGGTGTCACTTCAGTCCCTTTTTTGTTTCAATCAAGCAGCTTCCCCAACATGACCAAGATTGCAAAACAATATCCCTTTTGCTAATAATTCTGTAGATGTGGGAAGAATTCTTAATACAAGGGCTGACTCATCAATGGAAATGTGCTGACCTAAGTGAGATTATTTTTGATTTATGCTCCTGATTGTTATGTAAGGCTGAAACATTAAAATATTTGAATCAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005035576.1 True 1002 mRNA 0.40 3 48957777 48959202

Neighbor

gene id symbol gene type direction distance location
LOC110486653 LOC106601538 coding upstream 161749 48748015 ~ 48796028 (+)
LOC110486650 akts1 coding upstream 253398 48698203 ~ 48704379 (+)
LOC110486647 LOC106601548 coding upstream 335587 48598978 ~ 48622758 (+)
LOC110486644 LOC106601551 coding upstream 417290 48532510 ~ 48540487 (+)
ifi35 LOC106606925 coding upstream 451569 48500511 ~ 48506208 (+)
LOC110486662 LOC106606881 coding downstream 140805 49100007 ~ 49104036 (+)
LOC118936277 prf1 coding downstream 175749 49134951 ~ 49138251 (+)
LOC110486671 LOC100335037 coding downstream 239644 49198846 ~ 49202693 (+)
LOC110486670 LOC106606891 coding downstream 251263 49210465 ~ 49213419 (+)
LOC110486678 NA coding downstream 304327 49263529 ~ 49266771 (+)
G1182542 LOC106595301 non-coding upstream 1218 48949888 ~ 48956559 (+)
G1182540 NA non-coding upstream 12810 48944407 ~ 48944967 (+)
G1182492 NA non-coding upstream 78532 48875674 ~ 48879245 (+)
G1182521 NA non-coding upstream 82432 48875070 ~ 48875345 (+)
G1182493 NA non-coding upstream 92252 48810460 ~ 48865525 (+)
G1182550 LOC106594513 non-coding downstream 12672 48971874 ~ 48973071 (+)
G1182554 NA non-coding downstream 18314 48977516 ~ 48977900 (+)
G1182556 NA non-coding downstream 22352 48981554 ~ 48982061 (+)
G1182557 NA non-coding downstream 25972 48985174 ~ 48985475 (+)
G1182560 NA non-coding downstream 30467 48989669 ~ 48989912 (+)
G1182541 NA other upstream 9808 48946749 ~ 48947969 (+)
G1182354 LOC106601550 other upstream 396153 48556014 ~ 48561624 (+)
G1182153 NA other upstream 835202 48119613 ~ 48122575 (+)
G1181955 NA other upstream 1214713 47742361 ~ 47743064 (+)
G1181636 NA other upstream 1408229 47549279 ~ 47549548 (+)
G1182555 NA other downstream 18798 48978000 ~ 48981403 (+)
G1182595 NA other downstream 104583 49063785 ~ 49065142 (+)
G1182629 NA other downstream 155773 49114975 ~ 49118697 (+)

Expression


Co-expression Network