LOC110486662 (LOC106606881)


Basic Information

Item Value
gene id LOC110486662
gene name LOC106606881
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 49100007 ~ 49104036 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558431.2
CCCTTTACATCACACCAGCTACATAACAGACCACCGCTTTACACAGATCAACACCTGAATTAAGAGAGTAGAATTTCCTTTTTAAGGAGAAGGAAAACCCTTGACAAATAACTTTACTTTTCAAATTTCCAATCAAGACAAGAGGACACATCATAAGgatGGGATCTGCTGGGGTACAGATTGTATGTGTGGCCCTTGGGGTCCTGGGCCTGATCGGGGGCATTGTGTGCTGTGCCATCCCTAGGTGGAAAGTGTCATCATTTACAGGACAGAACATCGTAACGGCACAGgaAACTGAAGAGGGCCTGTGGATGACCTGTGTGGTGCAGAGTACGGGCCAGCAGCAGTGTAAGAGCTATGAGTCCCTGCTGATCCTGCCATCTGACCTGCAGGCGGCCCGCGCCATGACCATCATCAGCTgcatggtcacctccctggccatCCTCATCTTGTTCGCCGGCGCCGACTTCACCACCTGCGTGGAGAATGAGGACATCAAGCCCAAGATCAGCCTTGTGGCTGGGATCGCTCTGTTGGTGTCTggcctcctcctcatcatccctGTCAGCTGGTCCGCCCACAACGTCATCAGCAACTTCTACAACCCCCTTGTGGCCCAGAAGATGGAGCTGGGAACCTGTATCTTTATTGGCTGGGCTGCTGGGGTGCTGCTGATTCTGGCCGGAGGCCTGCTCATGTGCTTCAGCAGAGCCAAATCTGGCAGCTCGGGAGGAACCGCCAAGTACTACGGCAACAGCGCTTCAGCCCCCGCTGCCAACAAGAACTACGTCTAGTGCATGTATTACACctctgtatgtttgtatgtgtgtagagagatagtttgatgtattacacctctgtatgtttgtatgtgtgtagagagatagtttgatgtattacacctctgtatgtttgtatgtgtgtagagagatagtttgatgtattacacctctgtatgtttgtatgtgtgtagagagatagtttgatgtattacacctctgtatgtttgtatgtgtgtagagagatagtttgatgtattacacctctgtatgtttgtatgtgtgtagagAGATAGTTTGATGTACTACACctctgtatgtttgtatgtgtgtagagagatagtttgatgtattacacctctgtatgtttgtatgtgtgtagagAGATAGTTTGATGTACTACACCTctgtatatttctatgtgtgtAGAGAGATAGTTTGATGTATTACACctctgtatgtttgtatgtgtgtagagagatagtttgatgtattacacctctgtatgtttgtatgtgtgtagagagatagtttgatgtattacacctctgtatgtttgtatgtgtgtagagagatagtttgatgtattacacctctgtatgtttctatgtgtgtAGAGAGATAGTTTGATGTATTACACctctgtatgtttgtatgtgtgtagagagatagtttgatgtattacacctctgtatgtttgtatgtgtgtagagagatagtttgatgtattacacctctgtatgtttgtatgtgtgtagagagatagtttgatgtattacacctctgtatgtttgtatgtgtgtagagAGATAGTTTGATGTACTACACCTCtgtatgtttctatgtgtgtAGAGAGATAGTTTGATGGAAAGGAAATGGGTCAGACAGAATGAAAACAAGAAAGGGGAGGGGTTTAACCTTGAGGATAAAGAAGGGACATTATTAGTGGAAATAATGGTTGTaaatattgaatatttcaaaATAGTAAGACTGGTTTAGTTGTAGTTAATCCAAGGGTCCAATATGGTGGTTCAATTTAAAATACACATATATGTTTATTTGTTTTGGGGGGGACTAACtcaatatactataatatactacaaaTCGGAACTGTGTAGAGATGATGATGTACCTAAATTCATACAGTTTCTTAACTGTGTCCAGCTCGCTAATAATCACCTACATGAAGGCTAGACAGTCAAGGAGCACCGGAAATTCCAAAAACGGAATTTGGATAGAGGAAATTATTTTACAAATTGTGACGGCGAGGAAATATAACCAATTTTCAGTGTGGATCTCCGGACCTCGTTGAAGACCAAATGCAGCCCCCGGGGCAGAAGGAGTTTGACACCCTTGTTGTAATGTGTTATCTCGTTGAGTTTTTTAATGCTGGGTGGCATGCTTCTATAATGCCATGAATGAACAACAGAGAGCAAAGTGAGGGACTCAGTGGTCATGCATCTCAAAATTCAGGTATAGTTAAATGACTGTATATATCATTTACATCCATGAGATCACAACTTTTTAACTTATGTAAATCAGCTTGTCTTTTACTTTTGTGTATCAAATAATAAAtacgtgtttttatttta

Function

NR:

description
claudin-4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558431.2 True 2371 mRNA 0.41 3 49100007 49104036

Neighbor

gene id symbol gene type direction distance location
LOC110486658 NA coding upstream 140805 48957777 ~ 48959202 (+)
LOC118938635 NA coding upstream 141242 48958678 ~ 48958765 (+)
LOC118938636 NA coding upstream 141497 48958422 ~ 48958510 (+)
LOC118938637 NA coding upstream 141731 48958189 ~ 48958276 (+)
LOC110486653 LOC106601538 coding upstream 303979 48748015 ~ 48796028 (+)
LOC118936277 prf1 coding downstream 30915 49134951 ~ 49138251 (+)
LOC110486671 LOC100335037 coding downstream 94810 49198846 ~ 49202693 (+)
LOC110486670 LOC106606891 coding downstream 106429 49210465 ~ 49213419 (+)
LOC110486678 NA coding downstream 159493 49263529 ~ 49266771 (+)
LOC110486677 LOC106601591 coding downstream 177070 49281106 ~ 49284116 (+)
G1182591 NA non-coding upstream 45990 49053596 ~ 49054017 (+)
G1182588 NA non-coding upstream 53322 49045076 ~ 49046685 (+)
G1182587 NA non-coding upstream 55230 49044482 ~ 49044777 (+)
G1182585 NA non-coding upstream 66622 49033108 ~ 49033385 (+)
G1182584 NA non-coding upstream 67786 49029765 ~ 49032221 (+)
G1182627 NA non-coding downstream 66 49104102 ~ 49149924 (+)
G1182611 NA non-coding downstream 196165 49300201 ~ 49303631 (+)
G1182700 LOC106606901 non-coding downstream 206064 49310100 ~ 49311267 (+)
G1182705 NA non-coding downstream 215767 49319803 ~ 49320131 (+)
G1182707 NA non-coding downstream 219902 49323938 ~ 49324173 (+)
G1182595 NA other upstream 34865 49063785 ~ 49065142 (+)
G1182555 NA other upstream 118604 48978000 ~ 48981403 (+)
G1182541 NA other upstream 152038 48946749 ~ 48947969 (+)
G1182354 LOC106601550 other upstream 538383 48556014 ~ 48561624 (+)
G1182153 NA other upstream 977432 48119613 ~ 48122575 (+)
G1182629 NA other downstream 10939 49114975 ~ 49118697 (+)
G1182742 NA other downstream 315534 49419570 ~ 49426223 (+)

Expression


Co-expression Network