LOC110486671 (LOC100335037)


Basic Information

Item Value
gene id LOC110486671
gene name LOC100335037
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 49198846 ~ 49202693 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941385.1
GAAAAAGTGATGGAtcgtttcgtcaacatgaaagagaggaggatggcattggcatttctctccaagtaggacagacaggttgcaACAGGGAGGAGTCTCACAGTTCTGTTCAGTCCAGGTCAGGCTGAAGGACAAACAGACACAAAGGTGCAGAAAGAGAAAGGGACAAAAGACTGACCAACAAAATTAAAGGAATGGCGTCTCCTGCATCGATGGCGGCCCGCAGGGTATTATCTGCTGCATCACACGCAGGCCATGAGGGAGGATCAGCTAGGACCTGGAAGATCCTGTCGTTTGTGTTGGCCCTACCTGGTGTTGCCGTCTGCATCGCCAACGCCTACATGAAGATGCAACAGCACTCCCATGAACCCCCTGAGTTTGTGGCCTACTCACACCTTCGCATCCGCACCAAGAAATGGCCCTGGGGTGATGGCAACCACTCTCTCTTCCACAACCCTCATGAAAATGCTCTTCCTGAGGGTTATGAGGGCCCCCGCCACTAAGGAAACCTAACTCTATGCTGATCATCCACCTTCCCTGATTACTACGTGCTGAATAGCTCTAATGAACCTGGCATTATGCTACTGACCAAGGGGCCAATTAGCAACACTACTGACTGTGGTGCTCCCAGTCAgatagaaataaaaaatatatactactTTTactgtaatcacacaca
>XM_021558440.2
TTGATATTTCttggcagacagacaggttgcaACAGGGAGGAGTCTCACAGTTCTGTTCAGTCCAGGTCAGGCTGAAGGACAAACAGACACAAAGGTGCAGAAAGAGAAAGGGACAAAAGACTGACCAACAAAATTAAAGGAATGGCGTCTCCTGCATCGATGGCGGCCCGCAGGGTATTATCTGCTGCATCACACGCAGGCCATGAGGGAGGATCAGCTAGGACCTGGAAGATCCTGTCGTTTGTGTTGGCCCTACCTGGTGTTGCCGTCTGCATCGCCAACGCCTACATGAAGATGCAACAGCACTCCCATGAACCCCCTGAGTTTGTGGCCTACTCACACCTTCGCATCCGCACCAAGAAATGGCCCTGGGGTGATGGCAACCACTCTCTCTTCCACAACCCTCATGAAAATGCTCTTCCTGAGGGTTATGAGGGCCCCCGCCACTAAGGAAACCTAACTCTATGCTGATCATCCACCTTCCCTGATTACTACGTGCTGAATAGCTCTAATGAACCTGGCATTATGCTACTGACCAAGGGGCCAATTAGCAACACTACTGACTGTGGTGCTCCCAGTCAgatagaaataaaaaatatatactactTTTactgtaatcacacaca
>TU1348657
CTCACAGTTCTGTTCAGTCCAGGTCAGGCTGAAGGACAAACAGACACAAAGGTGCAGAAAGAGAAAGGGACAAAAGACTGACCAACAAAATTAAAGGAATGGCGTCTCCTGCATCGATGGCGGCCCGCAGGGTATTATCTGCTGCATCACACGCAGGCCATGAGGGAGGATCAGCTAGGACCTGGAAGATCCTGTCGTTTGTGTTGGCCCTACCTGGTGTTGCCGTCTGCATCGCCAACGCCTACATGAAGATGCAACAGCACTCCCATGAACCCCCTGAGTTTGTGGCCTACTCACACCTTCGCATCCGCACCAAGAAATGGCCCTGGGGTGATGGCAACCACTCTCTCTTCCACAACCCTCATGAAAATGCTCTTCCTGAGGGTTATGAGGGCCCCCGCCACTAAGGAAACCTAACTCTATGCTGATCATCCACCTTCCCTGATTACTACGTGCTGAATAGCTCTAATGAACCTGGCATTATGCTACTGACCAAGGGGCCAATTAGCAACACTACTGACTGTGGTGCTCCCAGTCAgatagaaataaaaaatatatactactTTTactgtaatcacac

Function

NR:

description
cytochrome c oxidase subunit 6A, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941385.1 False 679 mRNA 0.49 5 49198846 49202693
XM_021558440.2 False 626 mRNA 0.50 4 49200943 49202693
TU1348657 True 580 TUCP 0.50 4 49200986 49202690

Neighbor

gene id symbol gene type direction distance location
LOC118936277 prf1 coding upstream 60595 49134951 ~ 49138251 (+)
LOC110486662 LOC106606881 coding upstream 94810 49100007 ~ 49104036 (+)
LOC110486658 NA coding upstream 239644 48957777 ~ 48959202 (+)
LOC110486670 LOC106606891 coding downstream 7772 49210465 ~ 49213419 (+)
LOC110486678 NA coding downstream 60836 49263529 ~ 49266771 (+)
LOC110486677 LOC106601591 coding downstream 78413 49281106 ~ 49284116 (+)
LOC100136718 mlc-2 coding downstream 92643 49295336 ~ 49299251 (+)
LOC110486684 LOC106601519 coding downstream 167545 49370238 ~ 49384522 (+)
G1182627 NA non-coding upstream 48922 49104102 ~ 49149924 (+)
G1182591 NA non-coding upstream 144829 49053596 ~ 49054017 (+)
G1182588 NA non-coding upstream 152161 49045076 ~ 49046685 (+)
G1182587 NA non-coding upstream 154069 49044482 ~ 49044777 (+)
G1182585 NA non-coding upstream 165461 49033108 ~ 49033385 (+)
G1182611 NA non-coding downstream 97508 49300201 ~ 49303631 (+)
G1182700 LOC106606901 non-coding downstream 107407 49310100 ~ 49311267 (+)
G1182705 NA non-coding downstream 117110 49319803 ~ 49320131 (+)
G1182707 NA non-coding downstream 121245 49323938 ~ 49324173 (+)
G1182711 LOC106585476 non-coding downstream 147702 49350395 ~ 49352361 (+)
G1182629 NA other upstream 80149 49114975 ~ 49118697 (+)
G1182595 NA other upstream 133704 49063785 ~ 49065142 (+)
G1182555 NA other upstream 217443 48978000 ~ 48981403 (+)
G1182541 NA other upstream 250877 48946749 ~ 48947969 (+)
G1182354 LOC106601550 other upstream 637222 48556014 ~ 48561624 (+)
G1182742 NA other downstream 216877 49419570 ~ 49426223 (+)
ndua4 ndua4 other downstream 377633 49580324 ~ 49584562 (+)
G1183819 NA other downstream 629528 49832221 ~ 49835014 (+)

Expression


Co-expression Network