LOC110486670 (LOC106606891)


Basic Information

Item Value
gene id LOC110486670
gene name LOC106606891
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 49210465 ~ 49213419 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558439.2
GCAATTGCTCCGCTCACTGGGAGGTGCTGGAAACAAGTATGGGGTTGTTGTTATATTCATCGTTTTAGTTGATGCGGGGGAAAAAATAATCGCATGCCATAGCAGAGTTGTTAAATTATTGGTTTGAATTGCTTGTCATATCCTACTTCAAACAAATGTCATTGTCACTGAGTAACACAATGGATGTTATTGAGACGGTTGTAACAGAGAGTATTGAAGGAGATGAAACTCCAACGGCGTCCAGTTTGGATCCAGATAAATCGAAAGCAGAGTTTGTATGGACTTTACAAGCCACATGGCAACTTGTCCAAACCCGCCTCGAAATGGACCAGGATTTTGACCAGCCAGTGTGCAAGAAAAAGAAACTGTGGGAGACAGTGGCTGAGAGAGTGACTGCCAAGCTAAGAGCAGCTGGGAGCACAGATGTCACAGTCAAGGCCTATGAGTGTGATCTGAAGTGGCGTAACATGTTGGCCACATACAGGAAAAACGCTGAGAGGTCCAAGAGACTGGGGGCCCAGAGTGTCCACTGGGAGTTCTTCAAGGCCATGCATGTGGTCCTGGGGAAGAGTCGAGAGGAGATCGAGGCACAGCGCAGGTCCAAACTCAATGGGACCAAGCTGGGCAAGGCTATTGCCAGCAAGCGGTTTACCCCCATCCTTCCGACACCCTCCCTGACAGCTGCCCCCTTTGCTTCCAGGCCCCCCCAAGATGTCCTGCAGCTGTACATGGAGCTGCAGGAGAGGAAGATGAACATGTGGGCCCAGCAGAAGgccctggaggagaggaagatagaGGCCATCAATAATCTAGCCCGTGCAATCTCCGGTTTGTCTCACAGTCAAAACAACAGTTTCCAGCTGCCAGAGTAGCAGTACAGCACACCCGAGGAAAGGAGTTCTCATGGAACTAAAAACTTTTGGATTTTGTGTAATATATAGAAGCTTGTGCATAGAATGAAAGACTGCATCATGCAAATGTTTCTTAAGCGTTCAACCATTCAGCTACTTTGTGTTGTCATGATTTGTCATTGTATACGTTTTTATTATGCTATAATAACACCATTTGACAAAGGAGTTCACTGCAGGAATTCCCTGTGAATGAGAAGTGTGAATGAGAAGGCGGCTACACAGGGCATATTGTACATAGATCTGCCATAGGATACAAATAATCCTACATATGTATAAAATACAAGATATTGCTGTGATACTCTTCCTTTTTAACAGAATTTATATTGTATATTTTATCTCAATACAAACACAAAAATGATAAATCACTTTATGTACTTCCAGAATCCAACTCTTTGTACAGCAAATCTGCGATGGCTTCCCttctcctcacaccctcctcatcacactccccctctccctcctgtgtccctgcctccctctcaaCCTGTCCGTTGACCACTTTCCCCATGTCCAGAAATACATTGTGGAGTATGCAAGCAGTGAGGACAACTGCTTTGGCTCTTTCATAGTTCCCCATGTCCAAATACCTGAGCCTTTCAAATCTGGCTTTCAGGTCAGCCACAGCCTGGTCCAGGAGGTAAAAATGGGCTTCCAGGGACCTGTTGTAAAGATTTCCCCTGAGGCTACAACCCACTGCGTACGGGGTCAATATCTGGGCAGAGGCTGGATATCCAACTCGAGCCACTAGGCAGGTCCCTGGGGGCATCATCTCAGGGAGCTGTTTGAGTTTGTCCCTCAGAGCACTGGCTCTATCCAGGTCTGATCCCTTGCTGATTCTGCAGTGTATCAACCTGCCTGTATGGTTACACACCAGCTCCAGGTTCAGCCAGGAGTCGGGATGGGCCTCCTTCATCCTCTTTACCTCTGGCATCATGCTCTCCACATCCTGTTTGCCAATGGGCAGGCGGATGGGGATGCGGGTGTGCCCCAAGACTCCCAGGACCCTGGGGACGCCCTTCTCTTCCAAGCCTTTGGCTTTCCCCAGCAGgctggagaggggggggaggtTTTCAATAGCCTCAATGCCTGGAGGAGAGAAGGACCAGAAACAAACATGGGTGATGGAGTAAATAGTGTGTAAATTGTTTGAAGGTGAACATTTCAGGATATTGTAATTCAGTGATATTCTACGTCGGTGGGGGGGAGgtcgccccccccaaaaaaattgtaTAGGACAATATACAAACGTTTTTGTGAAAGATAATTGGAAAACATTTGAGTAAATGTATTGATGCCTTTTCATTTTGAAATTAATGCAATTAATTtaaggttatttgttgatgtaaaaatctACATTGACTGATTTTAAGGTTGTGTCATCTGATTTGGGGTGGCAAGAAATTATTGGGGGGAAAATGGGGTCCCCAGAAATACTGGCGGATAAAATGGGGTCCCTGCTGAAAACGTTTGTATAACACTTTGAATTGATCCACACTGAACAGCAGTCAACATACCAGTTGGCCATCTAATTTGTTGGTCCTCAAGTGTGTTCACACGCTCACAAAAGGAAAAGAAGATCCTATGAATGTTTCCTTTTTCCAGGCGGAAACTGGTAGACACAGAGCGATAGCTGAGGCGCttggagaggagggtgagggacAGGAGAACAGTGTGGGACAGGGATAAACGGGCACGTCCTGCCATACGGCTCTGATTGTATCTTGAGTTTGAATTCTGGAGGAGATCTGTAATGTACTGAGAAATTAAAATAAACATAAATCAGATCTGTGCACAGCAAA

Function

NR:

description
uncharacterized protein LOC110486670

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558439.2 True 2710 mRNA 0.46 2 49210465 49213419

Neighbor

gene id symbol gene type direction distance location
LOC110486671 LOC100335037 coding upstream 7772 49198846 ~ 49202693 (+)
LOC118936277 prf1 coding upstream 72214 49134951 ~ 49138251 (+)
LOC110486662 LOC106606881 coding upstream 106429 49100007 ~ 49104036 (+)
LOC118938635 NA coding upstream 251700 48958678 ~ 48958765 (+)
LOC118938636 NA coding upstream 251955 48958422 ~ 48958510 (+)
LOC110486678 NA coding downstream 50110 49263529 ~ 49266771 (+)
LOC110486677 LOC106601591 coding downstream 67687 49281106 ~ 49284116 (+)
LOC100136718 mlc-2 coding downstream 81917 49295336 ~ 49299251 (+)
LOC110486684 LOC106601519 coding downstream 156819 49370238 ~ 49384522 (+)
LOC110486690 LOC106606872 coding downstream 309111 49522530 ~ 49530733 (+)
G1182627 NA non-coding upstream 60541 49104102 ~ 49149924 (+)
G1182591 NA non-coding upstream 156448 49053596 ~ 49054017 (+)
G1182588 NA non-coding upstream 163780 49045076 ~ 49046685 (+)
G1182587 NA non-coding upstream 165688 49044482 ~ 49044777 (+)
G1182585 NA non-coding upstream 177080 49033108 ~ 49033385 (+)
G1182611 NA non-coding downstream 86782 49300201 ~ 49303631 (+)
G1182700 LOC106606901 non-coding downstream 96681 49310100 ~ 49311267 (+)
G1182705 NA non-coding downstream 106384 49319803 ~ 49320131 (+)
G1182707 NA non-coding downstream 110519 49323938 ~ 49324173 (+)
G1182711 LOC106585476 non-coding downstream 136976 49350395 ~ 49352361 (+)
G1182629 NA other upstream 91768 49114975 ~ 49118697 (+)
G1182595 NA other upstream 145323 49063785 ~ 49065142 (+)
G1182555 NA other upstream 229062 48978000 ~ 48981403 (+)
G1182541 NA other upstream 262496 48946749 ~ 48947969 (+)
G1182742 NA other downstream 206151 49419570 ~ 49426223 (+)
ndua4 ndua4 other downstream 366907 49580324 ~ 49584562 (+)
G1183819 NA other downstream 618802 49832221 ~ 49835014 (+)

Expression


Co-expression Network