LOC110486673 (elob)


Basic Information

Item Value
gene id LOC110486673
gene name elob
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 49215758 ~ 49219547 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558443.2
AGTTTTTAGTTAGCGGCCAATTGACTCCCATTCACTCATTGAAGGAGAGCTCTCCTTGTCCAAGAATCGCCCAGAAGGCACCGCGCTGTCCATTGACGTAGCATGGGCAACGTGCACAATGGTCGTTAATACGATTTCAATGGAGTTTCCTAGCTCTTAAAAAGTATCTCTGGTGTTATACACCACTGTTGGATGAGAGCGTTTTGTGATTCTCGCAGTGCAGCGTGGGATAGCGGAGGCGCAACCGACCGAGAGAAATGGATGTGTTTCTGATGATCCGGCGTCACAAGACGACCATCTTCACTGATGCCAAAGAGTCCACTACGGTCTACGAGCTGAAGCGCATAGTGGAGGGTATCCTAAAGAGGGCACCGGAGGAACAGAGGTTGTACAAGGATGACATGTTGCTGGAGGATAGTAAGACTCTTGGAGACTGTGGCTTCACAAATCAGACAGCCAGACCTCAGGCCCCAGGGACTGTTGGATTAGCTTTCCGTCTCGGTGaTGATGCATTTGAGCAGCTGAGGGTTGAGCCCTTCTCCAGCCCCCCAGAGCTTCCTGATGTCATGAAGCCTCAGGACTCTGGCAGCACAGCCAATGAGCAGGCTGTGCAGTGAAGGAAGCAgggagggggggcggggggggtctGGGAAGTGGTGCTTTGGATTAGGTAGGCTGGCTTTACAGACTGCTTTAGGGTAACATGCGAGTGTACCGGTGAGATCTTTAACTTTGCAGGAAGAACATgaattctctctcacacagagtaTTTTCATGTTATTCCTGAACTAGCCTCACGCATGTTTAGATTCACTCACAAGATCCCTCAACAAACATTTCTAATTTGTCAGGCCACTGTCAGTAAGGGGGTTGGGGGAAAAATGAAAAGTACCTCCTAATTTAATTCATACTAGGCTTTTGGAGGGTGTAGCCTGTGTTTTGGCTTGGTGGGGATTTGAGAAGGGAGTGGCTATTACATTTTTAGAATGCCCTCTTGCTGATTGCTTTTTTTTCTTTATTCAATATTAATATTACAATTTAGCGTTTTTTTTAATTACTCCTTGGTGGTAGTATGTGGAGCAACAAACGGTTTGTGAGTTTGTTATTAGCTTATCTAGATAACATACGCATGAATGGATctataataaacacacaaacatgttGATGCCATGACATAAAATGTATAGCAGAACACATGTACTTGCACACacggatggacacacacacagaatggtgTGAAGATTTACAATCGTCAGTTTTTATTTCAGTGTAAAGGTATTAAGCTTTCCCACTATCTGGTTTTTGTTTGCTTGTTTCTTTACCTTTGAACCTTTGCACTGGAGTTCCTGTGTAATTTTCTCCCCTTGATTCTCTATACAAAACTGTACcaatttgacccccccccccccccctccctcttttttTTGGGCTGAAGTGTAAAAGGAAACCTTCAGGGGAAAGAGACAGGCAGGAATCACTAATCTTTTGTGATAAACAAGCATGAAGGTACAAATTACTGGTGTTGAATTGAAATAGGTGTAAACTCTCAATTAGATTCAACAACCTGACTAGGGTGGTTGTCATGCCCTTTTTTTTAAGATATGATGGAAATGGTTCACCAACAAGCTCTTTTAAAACAGGACTTTATGAAACAAGCAACACCTGTAATTGTCTTGAgttgacattaaaaaaaaaaaaacattttctttgtCACCTCCTGTGTGGTATATTGCTAATGGACTCTGTGAAAGATGTTGTGCCATTCACTTTACTTGGTATTTGTCATTCATATGGTGAAATAAAATCAGTTCAGTGAAATTTGAA

Function

symbol description
elob Predicted to enable metal ion binding activity. Predicted to act upstream of or within transcription elongation from RNA polymerase II promoter. Predicted to be part of VCB complex and elongin complex. Is expressed in several structures, including axis; mesoderm; notochord; retina; and solid lens vesicle. Orthologous to human ELOB (elongin B).

NR:

description
Transcription elongation factor B polypeptide 2

GO:

id name namespace
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity biological_process
GO:0019901 protein kinase binding molecular_function

KEGG:

id description
K03873 ELOB, TCEB2; elongin-B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558443.2 True 1824 mRNA 0.43 4 49215758 49219547

Neighbor

gene id symbol gene type direction distance location
LOC110486668 armc5 coding downstream 6121 49203046 ~ 49209637 (-)
LOC110485206 LOC106606476 coding downstream 35435 49139093 ~ 49180323 (-)
LOC110486665 LOC106601588 coding downstream 84801 49114958 ~ 49130957 (-)
LOC110486661 LOC106606886 coding downstream 102500 49104102 ~ 49113258 (-)
LOC110486660 LOC103034594 coding downstream 119437 49081433 ~ 49096321 (-)
LOC110486672 LOC106606893 coding upstream 1501 49221048 ~ 49225262 (-)
rusf1 cssa06h16orf58 coding upstream 32080 49251627 ~ 49263335 (-)
prr14 LOC106601590 coding upstream 48061 49267608 ~ 49277799 (-)
cd2bp2 cd2b2 coding upstream 58602 49278149 ~ 49281110 (-)
LOC110486679 LOC106601593 coding upstream 80606 49300153 ~ 49312989 (-)
G1183512 NA non-coding downstream 46414 49168686 ~ 49169344 (-)
G1183515 NA non-coding downstream 71574 49143255 ~ 49144184 (-)
G1183493 NA non-coding downstream 113874 49099736 ~ 49101884 (-)
LOC110487553 NA non-coding downstream 134810 49079125 ~ 49081022 (-)
G1183473 NA non-coding downstream 170985 49044511 ~ 49044773 (-)
G1183273 NA non-coding upstream 75629 49295176 ~ 49299864 (-)
G1183567 NA non-coding upstream 97735 49317282 ~ 49317483 (-)
G1183297 NA non-coding upstream 105480 49325027 ~ 49325527 (-)
G1183588 NA non-coding upstream 213390 49432937 ~ 49433171 (-)
G1183590 NA non-coding upstream 216221 49435768 ~ 49435981 (-)
LOC110485205 LOC106597701 other downstream 238350 48959315 ~ 49053966 (-)
LOC110486656 syt3 other downstream 279301 48875671 ~ 48936482 (-)
G1183337 NA other downstream 547676 48667788 ~ 48668082 (-)
G1183225 NA other downstream 744775 48435826 ~ 48470983 (-)
G1183196 NA other downstream 826040 48379267 ~ 48389718 (-)
setd1a LOC106585476 other upstream 136831 49346540 ~ 49361234 (-)
LOC110486687 LOC106601611 other upstream 267379 49486817 ~ 49504819 (-)
LOC118938314 NA other upstream 317652 49537199 ~ 49544276 (-)
G1183706 NA other upstream 465791 49685338 ~ 49688456 (-)
LOC110486698 LOC106601594 other upstream 616116 49831067 ~ 49853671 (-)

Expression


Co-expression Network