LOC110486672 (LOC106606893)


Basic Information

Item Value
gene id LOC110486672
gene name LOC106606893
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 49221048 ~ 49225262 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558441.2
GCCCGTGTAAAAAACATTAACATCCGGCGGCATCATCACCTCTTCGTTTAGCTAGGTAGTTGTGCCTCGTATTTTATAGTTGTTCATTTCACACAGCGACAAAAATGCCAACACTATGTTCAGCATACAACTGCAAAAATCGCGGTCCGAAAGCTGATGTAGGATTTTTTAGTTTCCCCAAAAATGACCCTGAAAGACGCAAGCGATGGATTATTAATATGAAGTGGAAAGACTGGAATCCGCAACACCACCACCGTGTGTGCTCCATTCACTTTGAAGACAAGTACATTTGCCGGATGGACAAACGTCAACGTCTCACGCCAGACGCAGTCCCGACCATTTTTGACTTCCCAGAGAACTTTCAAAAGAAGAAGGCATCCATCCACCCACAGAGTAGAAGAGCCAGGAGTGATGGGTTGCCAGAGAAGTATACTGCTGCCCATGCTGTTACAGTGGCTGAACCGGTCACAACACCAAGCCCCACCGTCACATCAGAGACGAGCAAGCCGGCTAAAGACAATGCTAAAGCTCCAGAAAAAGTTACCTCTTCAAGTTGGTATATCCATGTAGATGAAGAAATCCAAATGGCTGAATCCCTCCCAGGTTTCTTCCACAGTGATTACTGTCTACCACACAGTATTCGCTGGGGATTCAAAGATGATGTTGCCCCGAAGGTGGCATGTGAGAACATGGAGTTCCAACTTCCACCTCTCAAGCACATAATAGAGATCACAGAGGCATGGGAGTGGCTGGGTATGGACATTAGAGGGCCACTGCCCCTAACACCGAACGGACACCAGTACGTTCTGACCTTGACAGACTTCTACTCCAAATGGGTGGAGGCCTTCCCCCTGAGAGGTTGTAGCTCTACTGAGGTAGCGCAGCATGTCGCTGAAGTCATCTCTCACTTTGGCTTCCCTTTTGGAATCCTTGTTCGACTAAAGAGGAAGTTTACCAGTAAGATCAACCTTGCCTTAAACAGTCATCTGAAGCTGAGGGGGTTCTCTCTCTTATACCGTCATCGGCAAGTTGGATCACTGGATCTGGCCACACAGACCCTGATCAGCAGGATGGTGTCTGATCTTGTGAAGGACCATCCAGACAACTGGGATGTCTGCCTCCCTGCAAAGGTGTTCAGTCTGTGTTTCAAGGAGCACCCCAAGACCAAGCAGAGACCTTTCTCTCTGCTGTGCTGCAAAGGACCACAGCCGGTCACCACCCCTAGGGATCTGTCTTTCAGTCCTGCAGAGCTCAGAGAGAGTTCCTTTGCAATCCAGTCAAATCAAGAGGGTGGGCATGACACTGATCCGCAAGACATCGTTGGCATTGAATCTGGAAAGGAAACAGCTGGAAAGAGCACTGTTACGAGGGTCTCCTTTTTAAGAAGCAACACAGAGAGTAACAACACTGACGGTAACACATATGGTAACCCAGACGGTAACCCGGACAGTCGCACGGAGGGTAACCCCGACGGTAGCACGGAGGGTAACCCCGACGGTAGCACGGAGGGTAACCCCGACGGTAGCACGGAGGGTAACCCCGACGGTAGCACGGAGGGTAACCCCGACGGTAGCACGGAGGGTAACACCGACGGTAGCACGGAGGGTAACACCGACGGTAGCACGGAGGGTAACACCGACGGTAGCACGGAGGGTAACACCAACAGTGAGCGATCCTCTGAAGAACATCATGCCATGGAAAACTGAATAATTGATTGGATGAGCGCTCTATCTATCGGGGGTgtagtttttatttttatcattTTGATTAGAAACACTTGTCTTATGGTTGTTTGGCTGGTGTACTGGGTCATGATTGTTACACAGGAGGATGATAGGAGTTTATGAACCAACTGGATCAATTCAAAATCAGTCAAAACATAATGCATAGCAGCATAGATGATGGAATAGTGATAAGCTTATCCTAAAAGCAATGTCTTTATTTTTCACTGTAAACTTAATTTTTTTCTTCCAGTAAATGAATCCAAACATG
>XM_036941387.1
GCCCGTGTAAAAAACATTAACATCCGGCGGCATCATCACCTCTTCGTTTAGCTAGGTAGTTGTGCCTCGTATTTTATAGTTGTTCATTTCACACAGCGACAAAAATGCCAACACTATGTTCAGCATACAACTGCAAAAATCGCGGTCCGAAAGCTGATGTAGGATTTTTTAGTTTCCCCAAAAATGACCCTGAAAGACGCAAGCGATGGATTATTAATATGAAGTGGAAAGACTGGAATCCGCAACACCACCACCGTGTGTGCTCCATTCACTTTGAAGACAAGTACATTTGCCGGATGGACAAACGTCAACGTCTCACGCCAGACGCAGTCCCGACCATTTTTGACTTCCCAGAGAACTTTCAAAAGAAGAAGGCATCCATCCACCCACAGAGTAGAAGAGCCAGGAGTGATGGGTTGCCAGAGAAGTATACTGCTGCCCATGCTGTTACAGTGGCTGAACCGGTCACAACACCAAGCCCCACCGTCACATCAGAGACGAGCAAGCCGGCTAAAGACAATGCTAAAGCTCCAGAAAAAGTTACCTCTTCAAGTTGGTATATCCATGTAGATGAAGAAATCCAAATGGCTGAATCCCTCCCAGGTTTCTTCCACAGTGATTACTGTCTACCACACAGTATTCGCTGGGGATTCAAAGATGATGTTGCCCCGAAGGTGGCATGTGAGAACATGGAGTTCCAACTTCCACCTCTCAAGCACATAATAGAGATCACAGAGGCATGGGAGTGGCTGGGTATGGACATTAGAGGGCCACTGCCCCTAACACCGAACGGACACCAGTACGTTCTGACCTTGACAGACTTCTACTCCAAATGGGTGGAGGCCTTCCCCCTGAGAGGTTGTAGCTCTACTGAGGTAGCGCAGCATGTCGCTGAAGTCATCTCTCACTTTGGCTTCCCTTTTGGAATCCTTGTTCGACTAAAGAGGAAGTTTACCAGTAAGATCAACCTTGCCTTAAACAGTCATCTGAAGCTGAGGGGGTTCTCTCTCTTATACCGTCATCGGCAAGTTGGATCACTGGATCTGGCCACACAGACCCTGATCAGCAGGATGGTGTCTGATCTTGTGAAGGACCATCCAGACAACTGGGATGTCTGCCTCCCTGCAAAGGTGTTCAGTCTGTGTTTCAAGGAGCACCCCAAGACCAAGCAGAGACCTTTCTCTCTGCTGTGCTGCAAAGGACCACAGCCGGTCACCACCCCTAGGGATCTGTCTTTCAGTCCTGCAGAGCTCAGAGAGAGTTCCTTTGCAATCCAGTCAAATCAAGAGGGTGGGCATGACACTGATCCGCAAGACATCGTTGGCATTGAATCTGGAAAGGAAACAGCTGGAAAGAGCACTGTTACGAGGGTCTCCTTTTTAAGAAGCAACACAGAGAGTAACAACACTGACGGTAACACATATGGTAACCCAGACGGTAACCCGGACAGTCGCACGGAGGGTAACCCCGACGGTAGCACGGAGGGTAACCCCGACGGTAGCACGGAGGGTAACCCCGACGGTAGCACGGAGGGTAACCCCGACGGTAGCACGGAGGGTAACCCCGACGGTAGCACGGAGGGTAACACCAACAGTGAGCGATCCTCTGAAGAACATCATGCCATGGAAAACTGAATAATTGATTGGATGAGCGCTCTATCTATCGGGGGTgtagtttttatttttatcattTTGATTAGAAACACTTGTCTTATGGTTGTTTGGCTGGTGTACTGGGTCATGATTGTTACACAGGAGGATGATAGGAGTTTATGAACCAACTGGATCAATTCAAAATCAGTCAAAACATAATGCATAGCAGCATAGATGATGGAATAGTGATAAGCTTATCCTAAAAGCAATGTCTTTATTTTTCACTGTAAACTTAATTTTTTTCTTCCAGTAAATGAATCCAAACATG
>XM_021558442.2
TGTGAAAGGCAGCAATACGCAACAAAGCGTGTAGTCTGCCAGAAAACTACACGAAGAAGAACAAGAGCAGCCCGTGTAAAAAACATTAACATCCGGCGGCATCATCACCTCTTCGTTTAGCTAGTTTCCCCAAAAATGACCCTGAAAGACGCAAGCGATGGATTATTAATATGAAGTGGAAAGACTGGAATCCGCAACACCACCACCGTGTGTGCTCCATTCACTTTGAAGACAAGTACATTTGCCGGATGGACAAACGTCAACGTCTCACGCCAGACGCAGTCCCGACCATTTTTGACTTCCCAGAGAACTTTCAAAAGAAGAAGGCATCCATCCACCCACAGAGTAGAAGAGCCAGGAGTGATGGGTTGCCAGAGAAGTATACTGCTGCCCATGCTGTTACAGTGGCTGAACCGGTCACAACACCAAGCCCCACCGTCACATCAGAGACGAGCAAGCCGGCTAAAGACAATGCTAAAGCTCCAGAAAAAGTTACCTCTTCAAGTTGGTATATCCATGTAGATGAAGAAATCCAAATGGCTGAATCCCTCCCAGGTTTCTTCCACAGTGATTACTGTCTACCACACAGTATTCGCTGGGGATTCAAAGATGATGTTGCCCCGAAGGTGGCATGTGAGAACATGGAGTTCCAACTTCCACCTCTCAAGCACATAATAGAGATCACAGAGGCATGGGAGTGGCTGGGTATGGACATTAGAGGGCCACTGCCCCTAACACCGAACGGACACCAGTACGTTCTGACCTTGACAGACTTCTACTCCAAATGGGTGGAGGCCTTCCCCCTGAGAGGTTGTAGCTCTACTGAGGTAGCGCAGCATGTCGCTGAAGTCATCTCTCACTTTGGCTTCCCTTTTGGAATCCTTGTTCGACTAAAGAGGAAGTTTACCAGTAAGATCAACCTTGCCTTAAACAGTCATCTGAAGCTGAGGGGGTTCTCTCTCTTATACCGTCATCGGCAAGTTGGATCACTGGATCTGGCCACACAGACCCTGATCAGCAGGATGGTGTCTGATCTTGTGAAGGACCATCCAGACAACTGGGATGTCTGCCTCCCTGCAAAGGTGTTCAGTCTGTGTTTCAAGGAGCACCCCAAGACCAAGCAGAGACCTTTCTCTCTGCTGTGCTGCAAAGGACCACAGCCGGTCACCACCCCTAGGGATCTGTCTTTCAGTCCTGCAGAGCTCAGAGAGAGTTCCTTTGCAATCCAGTCAAATCAAGAGGGTGGGCATGACACTGATCCGCAAGACATCGTTGGCATTGAATCTGGAAAGGAAACAGCTGGAAAGAGCACTGTTACGAGGGTCTCCTTTTTAAGAAGCAACACAGAGAGTAACAACACTGACGGTAACACATATGGTAACCCAGACGGTAACCCGGACAGTCGCACGGAGGGTAACCCCGACGGTAGCACGGAGGGTAACCCCGACGGTAGCACGGAGGGTAACCCCGACGGTAGCACGGAGGGTAACCCCGACGGTAGCACGGAGGGTAACCCCGACGGTAGCACGGAGGGTAACACCGACGGTAGCACGGAGGGTAACACCGACGGTAGCACGGAGGGTAACACCGACGGTAGCACGGAGGGTAACACCAACAGTGAGCGATCCTCTGAAGAACATCATGCCATGGAAAACTGAATAATTGATTGGATGAGCGCTCTATCTATCGGGGGTgtagtttttatttttatcattTTGATTAGAAACACTTGTCTTATGGTTGTTTGGCTGGTGTACTGGGTCATGATTGTTACACAGGAGGATGATAGGAGTTTATGAACCAACTGGATCAATTCAAAATCAGTCAAAACATAATGCATAGCAGCATAGATGATGGAATAGTGATAAGCTTATCCTAAAAGCAATGTCTTTATTTTTCACTGTAAACTTAATTTTTTTCTTCCAGTAAATGAATCCAAACATG

Function

NR:

description
uncharacterized protein LOC110486672 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558441.2 False 1992 mRNA 0.48 12 49221048 49225193
XM_036941387.1 False 1920 mRNA 0.48 13 49221048 49225193
XM_021558442.2 True 1944 mRNA 0.49 12 49221048 49225262

Neighbor

gene id symbol gene type direction distance location
LOC110486673 elob coding downstream 1501 49215758 ~ 49219547 (-)
LOC110486668 armc5 coding downstream 11411 49203046 ~ 49209637 (-)
LOC110485206 LOC106606476 coding downstream 40725 49139093 ~ 49180323 (-)
LOC110486665 LOC106601588 coding downstream 90091 49114958 ~ 49130957 (-)
LOC110486661 LOC106606886 coding downstream 107790 49104102 ~ 49113258 (-)
rusf1 cssa06h16orf58 coding upstream 26365 49251627 ~ 49263335 (-)
prr14 LOC106601590 coding upstream 42346 49267608 ~ 49277799 (-)
cd2bp2 cd2b2 coding upstream 52887 49278149 ~ 49281110 (-)
LOC110486679 LOC106601593 coding upstream 74891 49300153 ~ 49312989 (-)
hsd3b7 hsd3b7 coding upstream 101460 49326722 ~ 49339857 (-)
G1183512 NA non-coding downstream 51704 49168686 ~ 49169344 (-)
G1183515 NA non-coding downstream 76864 49143255 ~ 49144184 (-)
G1183493 NA non-coding downstream 119164 49099736 ~ 49101884 (-)
LOC110487553 NA non-coding downstream 140100 49079125 ~ 49081022 (-)
G1183473 NA non-coding downstream 176275 49044511 ~ 49044773 (-)
G1183273 NA non-coding upstream 69914 49295176 ~ 49299864 (-)
G1183567 NA non-coding upstream 92020 49317282 ~ 49317483 (-)
G1183297 NA non-coding upstream 99765 49325027 ~ 49325527 (-)
G1183588 NA non-coding upstream 207675 49432937 ~ 49433171 (-)
G1183590 NA non-coding upstream 210506 49435768 ~ 49435981 (-)
LOC110485205 LOC106597701 other downstream 243640 48959315 ~ 49053966 (-)
LOC110486656 syt3 other downstream 284591 48875671 ~ 48936482 (-)
G1183337 NA other downstream 552966 48667788 ~ 48668082 (-)
G1183225 NA other downstream 750065 48435826 ~ 48470983 (-)
G1183196 NA other downstream 831330 48379267 ~ 48389718 (-)
setd1a LOC106585476 other upstream 131116 49346540 ~ 49361234 (-)
LOC110486687 LOC106601611 other upstream 261664 49486817 ~ 49504819 (-)
LOC118938314 NA other upstream 311937 49537199 ~ 49544276 (-)
G1183706 NA other upstream 460076 49685338 ~ 49688456 (-)
LOC110486698 LOC106601594 other upstream 610401 49831067 ~ 49853671 (-)

Expression


Co-expression Network