LOC110486678


Basic Information

Item Value
gene id LOC110486678
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 49263529 ~ 49266771 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002468097.2
GAGGGAGTGGGACGTCAGAGGAGGTTAAAGTGTGAACAGTAAAGGGGCGTGGAGGTTTCACACAAGAAAGAGTTATAATCCACTCCCAGCCTTCTCCTTTTTCAGACACCACTAACTTTCATGGTGACCACAACCAAAACTGAGACTGCAAAAGAAAGAAAGATTGCTCAAGAAAATATTATAAACAAGAAATATCTGGATAACATTTGGATATGTTAAATCAAGTCTTCACGAACCTGAAGCCACAACCAACTAGCAGCTGTGATCATTAATTAAATCCAGGAAGGAAAATAAATCAAAGAAAATATCAGCTTTCTTCTTCACAGCTCTGTCAGCCGTCATAAGTGAGGATTTCAGTTTGACTGGAGAGTAGACAGAGGCATACAGAGCTGTACTTTCCCAATCAAGATCAAGCCTGGACTAAAATGTCTTCCCAATCAGCAACAATGGAGGACATTCCACTGACTGCTGTCCCAGGTCCAGGTGAAACGACAGATGCCCAAAATGACACCACCTGCCTTCAAGTGATCACCTGCTGTGGTCGTGACCATACTGTTCCCTCCTGTGCCAAGGACAGGGACTATAGGAGACTGGCCATTAGCAGCATCATCTGTGGACTCTCCTGCATTGGCATTTTAGCTTTGGTCAACTCAGTCAAGGCTCGAGAGGCAAGGAAGACGACTCCAGAGAAGGCTAAACAATACTCCCAACGGGCAAAAACGTTTGGGATCATTTCTATtgtggtgtgggtggtgattCTGGTACTCAGCCCACTACTATTGGGACTGGTGTCATACATACTCACTCTGATAGACTGACCAATTCCCAGGAACCACCAAGGTCGGATGTACTGTACCATAAGGATGGCTACAGGACAACGGTCCAACTTCTTTAGTATTGATCTTGGACTGCTGTGACACTGTGAGGTGGGAACAGATGGAAAAGCACCTCCGGTGACTCGGGGAGAccccactgtatacagcctcccTGAGTATCATTCTGATAAGGCTGTCTTGCTGATAAGGATTTACAAAGGCACCTTTAACTTTATTTTGTGTCACTCTGGAATTTATCGCTGGAAGACTGGTTTATAGTTAACATTCAAGTGATGCCACAGCTATAAATACATTATAAATATTAAGATATTTTGACATTTATCAGTAGCCCAACCAGACTTTTAGCACTTAAGAGTAAGGACTGTAGTCAGACTACCTTCTTCCTGAATAAGAGGTTGGTTCAGAGACGAGAGATGAGCAAGGGGACACAAAATAAGCACTTGTTTTTGAGATAGCATTTAATGGACACGGTTTATTTGCTGACATACATGAGTCCAAGACTGTATGAGTAtaaaacagcagatttttaaaAATCCTGTATAAATTCAAAACAAACTGTGAGCCACTATACAGGGGCCTGACTCCAAAACACTCCCATGTCCACTATCTGTCTCAACCTTGACGTTTCACTTTTACCATTTATGATATGCAACATTAACTTTATTTTTTAACAATGTTATATTTTTTATCAGTGAAATAAATACATGTGTATATGTGAGGAACTAAATCTAAATGTCTAATTATAAAGGACAAATTGTGAACTAGGTATAATTAAATCAGGGCAGTGTTTCTGATTTACAGTAATCGTGAAAACTGCCTTTGGTTTTAAATACCAAAAATGTACATTACTTCATTTTGTTTACATTATCATTTCTACATTTACTGTATTCATGTCATTGCCTTACtttgtattttatatttatacaTAGCATGTTGTAAAGATTTTGTAATTAAATGAAAATACATTTACATCAA
>TU1348666
TGGTGACCACAACCAAAACTGAGACTGCAAAAGAAAGAAAGATTGCTCAAGAAAATATTATAAACAAGAAATATCTGGATAACATTTGGATATGTTAAATCAAGTCTTCACGAACCTGAAGCCACAACCAACTAGCAGCTGTGATCATTAATTAAATCCAGGAAGGAAAATAAATCAAAGAAAATATCAGCTTTCTTCTTCACAGCTCTGTCAGCCGTCATAAGTGAGGATTTCAGTTTGACTGGAGAGTAGACAGAGGCATACAGAGCTGTACTTTCCCAATCAAGATCAAGCCTGGACTAAAATGTCTTCCCAATCAGCAACAATGGAGGACATTCCACTGACTGCTGTCCCAGGTCCAGGTGAAACGACAGATGCCCAAAATGACACCACCTGCCTTCAAGTGATCACCTGCTGTGGTCGTGACCATACTGTTCCCTCCTGTGCCAAGGACAGGGACTATAGGAGACTGGCCATTAGCAGCATCATCTGTGGACTCTCCTGCATTGGCATTTTAGCTTTGGTCAACTCAGTCAAGGCTCGAGAGGCAAGGAAGACGACTCCAGAGAAGGCTAAACAATACTCCCAACGGGCAAAAACGTTTGGGATCATTTCTATtgtggtgtgggtggtgattCTGGTACTCAGCCCACTACTATTGGGACTGGTGTCATACATACTCACTCTGATAGACTGACCAATTCCCAGGAACCACCAAGGTCGGATGTACTGTACCATAAGGATGGCTACAGGACAACGGTCCAACTTCTTTAGTATTGATCTTGGACTGCTGTGACACTGTGAGGTGGGAACAGATGGAAAAGCACCTCCGGTGACTCGGGGAGAccccactgtatacagcctcccTGAGTATCATTCTGATAAGGCTGTCTTGCTGATAAGGATTTACAAAGGCACCTTTAACTTTATTTTGTGTCACTCTGGAATTTATCGCTGGAAGACTGGTTTATAGTTAACATTCAAGTGATGCCACAGCTATAAATACATTATAAATATTAAGATATTTTGACATTTATCAGTAGCCCAACCAGACTTTTAGCACTTAAGAGTAAGGACTGTAGTCAGACTACCTTCTTCCTGAATAAGAGGTTGGTTCAGAGACGAGAGATGAGCAAGGGGACACAAAATAAGCACTTGTTTTTGAGATAGCATTTAATGGACACGGTTTATTTGCTGACATACATGAGTCCAAGACTGTATGAGTAtaaaacagcagatttttaaaAATCCTGTATAAATTCAAAACAAACTGTGAGCCACTATACAGGGGCCTGACTCCAAAACACTCCCATGTCCACTATCTGTCTCAACCTTGACGTTTCACTTTTACCATTTATGATATGCAACATTAACTTTATTTTTTAACAATGTTATATTTTTTATCAGTGAAATAAATACATGTGTATATGTGAGGAACTAAATCTAAATGTCTAATTATAAAGGACAAATTGTGAACTAGGTATAATTAAATCAGGGCAGTGTTTCTGATTTACAGTAATCGTGAAAACTGCCTTTGGTTTTAAATACCAAAAATGTACATTACTTCATTTTGTTTACATTATCATTTCTACATTTACTGTATTCATGTCATTGCCTTACtttgtattttatatttatacaTAGCATGTTGTAAAGATTTTGTAATTAAATGAAAATACATTTACATCAATTTG

Function

NR:

description
PREDICTED: uncharacterized protein LOC103367336

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002468097.2 False 1811 mRNA 0.40 3 49263529 49266767
TU1348666 True 1694 TUCP 0.39 3 49263650 49266771

Neighbor

gene id symbol gene type direction distance location
LOC110486670 LOC106606891 coding upstream 50110 49210465 ~ 49213419 (+)
LOC110486671 LOC100335037 coding upstream 60836 49198846 ~ 49202693 (+)
LOC118936277 prf1 coding upstream 125278 49134951 ~ 49138251 (+)
LOC110486662 LOC106606881 coding upstream 159493 49100007 ~ 49104036 (+)
LOC118938635 NA coding upstream 304764 48958678 ~ 48958765 (+)
LOC110486677 LOC106601591 coding downstream 14339 49281106 ~ 49284116 (+)
LOC100136718 mlc-2 coding downstream 28569 49295336 ~ 49299251 (+)
LOC110486684 LOC106601519 coding downstream 103471 49370238 ~ 49384522 (+)
LOC110486690 LOC106606872 coding downstream 255763 49522530 ~ 49530733 (+)
LOC110486693 rundc3a coding downstream 266253 49533020 ~ 49551503 (+)
G1182627 NA non-coding upstream 113605 49104102 ~ 49149924 (+)
G1182591 NA non-coding upstream 209512 49053596 ~ 49054017 (+)
G1182588 NA non-coding upstream 216844 49045076 ~ 49046685 (+)
G1182587 NA non-coding upstream 218752 49044482 ~ 49044777 (+)
G1182585 NA non-coding upstream 230144 49033108 ~ 49033385 (+)
G1182611 NA non-coding downstream 33434 49300201 ~ 49303631 (+)
G1182700 LOC106606901 non-coding downstream 43333 49310100 ~ 49311267 (+)
G1182705 NA non-coding downstream 53036 49319803 ~ 49320131 (+)
G1182707 NA non-coding downstream 57171 49323938 ~ 49324173 (+)
G1182711 LOC106585476 non-coding downstream 83628 49350395 ~ 49352361 (+)
G1182629 NA other upstream 144832 49114975 ~ 49118697 (+)
G1182595 NA other upstream 198387 49063785 ~ 49065142 (+)
G1182555 NA other upstream 282126 48978000 ~ 48981403 (+)
G1182541 NA other upstream 315560 48946749 ~ 48947969 (+)
G1182742 NA other downstream 152803 49419570 ~ 49426223 (+)
ndua4 ndua4 other downstream 313559 49580324 ~ 49584562 (+)
G1183819 NA other downstream 565454 49832221 ~ 49835014 (+)
G1183875 NA other downstream 616054 49882821 ~ 49883435 (+)

Expression

LOC110486678 Expression in all Baseline Samples

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LOC110486678 Expression in each Bioproject

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LOC110486678 Expression in each Sample
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Co-expression Network