LOC110486677 (LOC106601591)


Basic Information

Item Value
gene id LOC110486677
gene name LOC106601591
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 49281106 ~ 49284116 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110486677
AAAAAGTTCTCTATAAACAATTCAAAACGTTCAGCACCACAACGGGGTGTATTCAGAGTCTGTTCGTTTCGAAGTGTTTAAATCTTATGTAACGAATCCATGCAAGGCCATTTCATGGGTGTTTGGGGGGTATTTACCCCTAGAGACCAATTTATTGAAGGCTAATGACACTCCTCCTTTTCTTATGAGccttgtgttgttaccatgttcaGGATCCTCTCTTTGTTGGAGAACGTTGTAATGAAGATCCATGAGAAGATTTTAACCCATTACCTATCCTGCACCTCACCGATAGATAAAGAAGGTTACCTCTACAAAAAGAAAGAGAGGACCTCCTCCCACCAGAGGCGCTGGTTTGTCCTGAAAGCCAATCTCCTGTTCTACCAGGAGCGTCCGGCAGATCGACACCTGCTGGGGGTTATTGTCCTAGAGGGCTGTGCTGTCCAGCGCTGTGAGTCTGAGGGAGGACTGTTTGCCTTCTCCATGGTGTTCAGAGGTTCAGGGCTGAAAACCTACGGGCTTGCTGCTGAGGACCAGCTGGGCCAGGAGAGCTGGGTCAAAGCCCTGCTCACAGCCAGCCACTGCTACCTTTCACTGCTGGTCAGAGACCTGGGGAAGCAGTACGAAGaaccagagaggagagaagggggaagccACAGTGCCAGTAATCTATTACAAGCCCCTCCAATCCCCAGCAACGTAATCAATAAGAGGTCCCCTAAGCATTGGCCCAAGAGAAACGCACATGTCACACCGATAAATGGACCAGCACCACCATATGGGGAATGGCCACAAGTGGACTGATCCTCTAGAGGATTTCACCAAGCTACATGATTACTATGGAGAGGAGGTGAAGCAGCTGAGAGCTGATTGGctgaggaggaggcaggaggaagAGGCGCAGCTTGAGGAGGATCTCATTGACCTGAGTGAACACTGACCCACAGAGATCAGACAGTCACCACTCTGGTTATTTTGATGAGGATTTTGGTGTGAATGCCAGTAATCTGAAATAAGAAAGTGCCTTTATAATTTGAGGAACTAGAGCATTAAAGAAGAACTAGTCACCTGTGTATACATCATGATGGGATTATAGTCCTATGAGGTTGATGGTGAGCCTAAAAATGTCTTGTCACAAAGCAGAGACTCATCATCAAACTCATAAGACTATCACCCATAGTGGTGTTGCAACCGGATGCATCCGGTTGTCAGGGATACAGCCCTGATGTGGGAACTCTGCTCGGGTGTTTCTTTTGCACCTGCTACATTAGGTTATAGGACTATAATCAGCTCATGCTGTATACACAGGTGACCTGTTCCTCTTAAACTCTCTAGTTGCTCAAATGATAGTCACTTTCTTATTTCAGAGTACTGGCACACCTACTGGTTTGTCTGTTACTGTTTGTAAATTATCATTAAAATCACTGGTATATTTTCTAGGTAA
>TU1348751
TCACTGAGGAAATTAACTTAACATTTTACACAGAACAGGGAAGTGAGGAAGAACACCCCCTCAATGTATACTATCTGGGTAGAAGGTGTGGACTTAAgcgtagaggggagagagaatatTGTGTGTCAGGGTTTTGTTTCAAGGAAGTGGGTTGAGTTATTTATATTTCAACACTTGTCCTCTAGTACCCAGTGAAGGACCTGTGTTCGTAACCTGAAACTTTATATTTAAACATTGTCTTATTTTAGATGTGTTGCAGTGAACACAAACTACTGTGGAAATTAGACTGAGAGGAACAAGTGAAGGTTTATGGCAGAAAATCTAAAACATATACAATTGGATGGATAGAGAGTGACCCTGAGAGGATCCTCTCTTTGTTGGAGAACGTTGTAATGAAGATCCATGAGAAGATTTTAACCCATTACCTATCCTGCACCTCACCGATAGATAAAGAAGGTTACCTCTACAAAAAGCATCCTCCTCTTACACATACCACATCAGAAAGAGAGGACCTCCTCCCACCAGAGGCGCTGGTTTGTCCTGAAAGCCAATCTCCTGTTCTACCAGGAGCGTCCGGCAGATCGACACCTGCTGGGGGTTATTGTCCTAGAGGGCTGTGCTGTCCAGCGCTGTGAGTCTGAGGGAGGACTGTTTGCCTTCTCCATGGTGTTCAGAGGTTCAGGGCTGAAAACCTACGGGCTTGCTGCTGAGGACCAGCTGGGCCAGGAGAGCTGGGTCAAAGCCCTGCTCACAGCCAGCCACTGCTACCTTTCACTGCTGGTCAGAGACCTGGGGAAGCAGTACGAAGAGGCTAAACGCCAAGCTGGCCCTGCTGAATCCCATCCACGAACCACTGTGACTGGTCCAGGCTCAATGTGCCTTACCCAATCCATGACTTACCTGAACTcatgctcctcctccttcctcatgccagaaccagagaggagagaagggggaagccACAGTGCCAGTAATCTATTACAAGCCCCTCCAATCCCCAGCAACGTAATCAATAAGAGGTCCCCTAAGCATTGGCCCAAGAGAAACGCACATGTCACACCGATAAATGGACCAGCACCACCATATGGGGAATGGCCACAAGTGGACTGATCCTCTAGAGGATTTCACCAAGCTACA

Function

NR:

description
sesquipedalian-1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110486677 False 1444 mRNA 0.48 4 49281106 49284116
TU1348751 True 1137 TUCP 0.48 4 49281659 49283503
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110486678 NA coding upstream 14339 49263529 ~ 49266771 (+)
LOC110486670 LOC106606891 coding upstream 67687 49210465 ~ 49213419 (+)
LOC110486671 LOC100335037 coding upstream 78413 49198846 ~ 49202693 (+)
LOC118936277 prf1 coding upstream 142855 49134951 ~ 49138251 (+)
LOC110486662 LOC106606881 coding upstream 177070 49100007 ~ 49104036 (+)
LOC100136718 mlc-2 coding downstream 11220 49295336 ~ 49299251 (+)
LOC110486684 LOC106601519 coding downstream 86122 49370238 ~ 49384522 (+)
LOC110486690 LOC106606872 coding downstream 238414 49522530 ~ 49530733 (+)
LOC110486693 rundc3a coding downstream 248904 49533020 ~ 49551503 (+)
LOC110486691 LOC106601608 coding downstream 267606 49551722 ~ 49557177 (+)
G1182627 NA non-coding upstream 131182 49104102 ~ 49149924 (+)
G1182591 NA non-coding upstream 227089 49053596 ~ 49054017 (+)
G1182588 NA non-coding upstream 234421 49045076 ~ 49046685 (+)
G1182587 NA non-coding upstream 236329 49044482 ~ 49044777 (+)
G1182585 NA non-coding upstream 247721 49033108 ~ 49033385 (+)
G1182611 NA non-coding downstream 16085 49300201 ~ 49303631 (+)
G1182700 LOC106606901 non-coding downstream 25984 49310100 ~ 49311267 (+)
G1182705 NA non-coding downstream 35687 49319803 ~ 49320131 (+)
G1182707 NA non-coding downstream 39822 49323938 ~ 49324173 (+)
G1182711 LOC106585476 non-coding downstream 66279 49350395 ~ 49352361 (+)
G1182629 NA other upstream 162409 49114975 ~ 49118697 (+)
G1182595 NA other upstream 215964 49063785 ~ 49065142 (+)
G1182555 NA other upstream 299703 48978000 ~ 48981403 (+)
G1182742 NA other downstream 135454 49419570 ~ 49426223 (+)
ndua4 ndua4 other downstream 296210 49580324 ~ 49584562 (+)
G1183819 NA other downstream 548105 49832221 ~ 49835014 (+)
G1183875 NA other downstream 598705 49882821 ~ 49883435 (+)
G1184435 LOC106606845 other downstream 1701697 50985813 ~ 50986566 (+)

Expression

LOC110486677(LOC106601591) Expression in all Baseline Samples

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LOC110486677(LOC106601591) Expression in each Bioproject

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LOC110486677(LOC106601591) Expression in each Sample
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Co-expression Network