Gene
RNA
| Item | Value |
|---|---|
| gene id | setd1a |
| gene name | LOC106585476 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048577.1 |
| NCBI id | CM023231.2 |
| chromosome length | 73332040 |
| location | 49346540 ~ 49361234 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| histone-lysine N-methyltransferase SETD1A-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036941391.1 | False | 9405 | mRNA | 0.54 | 21 | 49346540 | 49360939 |
| XM_036941393.1 | False | 9404 | mRNA | 0.54 | 21 | 49346540 | 49360941 |
| XM_036941392.1 | False | 9027 | mRNA | 0.54 | 21 | 49346540 | 49361234 |
| TU1349475 | True | 698 | TUCP | 0.57 | 2 | 49356378 | 49357214 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| hsd3b7 | hsd3b7 | coding | downstream | 6683 | 49326722 ~ 49339857 (-) |
| LOC110486679 | LOC106601593 | coding | downstream | 33551 | 49300153 ~ 49312989 (-) |
| cd2bp2 | cd2b2 | coding | downstream | 65430 | 49278149 ~ 49281110 (-) |
| prr14 | LOC106601590 | coding | downstream | 68741 | 49267608 ~ 49277799 (-) |
| rusf1 | cssa06h16orf58 | coding | downstream | 83205 | 49251627 ~ 49263335 (-) |
| LOC110486683 | ccdc47 | coding | upstream | 4184 | 49365418 ~ 49369859 (-) |
| kcnh2 | kcnh2 | coding | upstream | 26924 | 49388158 ~ 49429351 (-) |
| LOC100136168 | LOC106585555 | coding | upstream | 87008 | 49448242 ~ 49456279 (-) |
| LOC110486686 | map3k3 | coding | upstream | 106532 | 49467766 ~ 49485525 (-) |
| LOC110486687 | LOC106601611 | coding | upstream | 125583 | 49486817 ~ 49504819 (-) |
| G1183297 | NA | non-coding | downstream | 21013 | 49325027 ~ 49325527 (-) |
| G1183567 | NA | non-coding | downstream | 29057 | 49317282 ~ 49317483 (-) |
| G1183273 | NA | non-coding | downstream | 46676 | 49295176 ~ 49299864 (-) |
| G1183512 | NA | non-coding | downstream | 177196 | 49168686 ~ 49169344 (-) |
| G1183515 | NA | non-coding | downstream | 202356 | 49143255 ~ 49144184 (-) |
| G1183588 | NA | non-coding | upstream | 71703 | 49432937 ~ 49433171 (-) |
| G1183590 | NA | non-coding | upstream | 74534 | 49435768 ~ 49435981 (-) |
| G1183592 | NA | non-coding | upstream | 77917 | 49439151 ~ 49439353 (-) |
| G1183595 | NA | non-coding | upstream | 83130 | 49444364 ~ 49444722 (-) |
| G1183604 | NA | non-coding | upstream | 100258 | 49461492 ~ 49461846 (-) |
| LOC110485205 | LOC106597701 | other | downstream | 369132 | 48959315 ~ 49053966 (-) |
| LOC110486656 | syt3 | other | downstream | 410083 | 48875671 ~ 48936482 (-) |
| G1183337 | NA | other | downstream | 678458 | 48667788 ~ 48668082 (-) |
| G1183225 | NA | other | downstream | 875557 | 48435826 ~ 48470983 (-) |
| G1183196 | NA | other | downstream | 956822 | 48379267 ~ 48389718 (-) |
| LOC118938314 | NA | other | upstream | 175965 | 49537199 ~ 49544276 (-) |
| G1183706 | NA | other | upstream | 324104 | 49685338 ~ 49688456 (-) |
| LOC110486698 | LOC106601594 | other | upstream | 474429 | 49831067 ~ 49853671 (-) |
| G1184986 | NA | other | upstream | 1265413 | 50626647 ~ 50628539 (-) |
