LOC100136168 (LOC106585555)


Basic Information

Item Value
gene id LOC100136168
gene name LOC106585555
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 49448242 ~ 49456279 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558456.2
CCTGACAGGGTTTCATTCCAGCCATGGAGAGTCAGAGAGTCCTGTCGTCTTACAGGAAGCGTTTCGGGCCCCAGGGGGCCGGCAGCGTGGGTGGGGGCGTGCGGCTCAGCAGTCTCTCCTCCAGCCGCTTCTCCCTCCATGGGACCCCCCGCCACCTGACCCACTCCAGCACCATTTCCCGTCTCTCCCTGGGGTCGGCTGGAGGGGCCCTGCTCCTGGGGACCCCTGGGAACCGGCTGGACTTCTCGGCTGACTCACTCCTCAAGGCCCAGTACCGGGAGACGCGCACCAACGAGAAGGTGGAGATGATGGGTCTGAACGACCGCTTCGCCAGCTTTATAGAGAAGGTGCGCTTCCTGGAGCAGCAGAACACGGTGCTGGTGACGGAGCTGACCCAACTGAGGGGGAAGGAGCCCAGCCGTCTGGGGGACATCTTCCAGGAGGAGCTGAGGGAGCTGCGCAGGCAGGTGGACGGACTCAGCGCTGGGAAGGCCCggctggagatagagagggacaacATGGCTGCTGACGTGGCCACGCTCAAACAGAGACTGCAAGATGAGATGGTTCTTAGACAGGATGCAGAGAGCAACTTAAACGCCTTTAGACAGGATGTGGATGAGGCGTCTCTGAACCGTGTCCAGTTGGAGAGGAGGATAGACGCGCTGCAGGATGAGATTGCCTTCCTCAAGAAGATCCACGAGGAGGAGCTGCGTGAGCTGCAGGAGCAGCTGATGGCCCAGCAGGTCCATGTGGATGTGGACGTGTCCAAGCCAGACCTGACCGCTGCTCTGAGGGACATCCGGGTCCAGTATGAGTCCGTGGCCTCCTCGAACATTCAGGAGACGGAGGAGTGGTACCGCTCCAAGTTTGTCGACTTGACCGACGCAGCTACTCGGAATGCAGACGCCTTGCGATTGGCCAAACAGGAGGGCAACGAGTACCGCCGGCAACTCCAGGCCATGACCTGTGATGTGGAGGCGCTCCGTGGAACAAACGAGTCTCTGGAGCAGCAGCTGCGTGAGATGGAGGACCGTTTCTCCGTGGAGACGGCTGGTTACCAGGATACGGTGGGTCATCTGGAGGAGGAGATCCAGACTCTGAAGGAGGGGATGGCCAGACACCTGCAGGAGTACCAGGACCTGCTCAACGTCAAACTGGCCCTGGACATAGAGATCGCTACCTACAGGAAGctgctggagggagaggagagcaggaTCACTGTTCCAATGCAGAGCTTCTCCAACCTGCAGTTCAGAGAGACCAGTATGGACACTAAGTTCTCTCCAGAGGCCCATGTCAAGAGGAGCATCATAGTGCGGACTGTGGAGACTAGAGACGGGGAGATCATTAAGGAGTCTACGGCTGAGAGGAAGGAGATTCCTGACAGTCCTTAAAGGACACAAATGGTGCTAGCTATATGTCTGTCACACTGTCCCCACTCCCAAGTAACGCTTAGAGGCCTTGCATGATAATGATACCCTTTCCTGACCAGGCACCTCCCTCTTCTCCAAACCTTAAAGTCCCCCCAGTTGCAACCACCTCACcatccccttcctcccctcttcatCATCACCCCAGACCATGCTACatcattaaatactttttttgcattttgttgaaacaaaaaaaaatccctcATTGCGTCCTTGTTAGCATTTTTGccaaaaaagtattatttttgtATTGCTGTAACTGGAGATAGGCTTTAGTGCTGGGAAGTGTGGCCATGCACCTTAGAAGGAAGGGTCTTGGACTACTACCCTTTGTGATTAACAGACTTAATGCTtggacatttattttttgttcAGCTCATAATAGTGACAGATCAGAGTAGGAAATGTTCTCAATGTGTTTGGATAGTAGCCAGAGAGGAGGCCTTGAAATGTAGTGATTGTTATTCAGCTAGTGGCAGGGGTCGTGCTGAAGTTGTGTGGTTTGAGTGGATGTGAGAAGTCAAGAGGAAAGTACAGTTGCTGGGGTTTGCAGTGGACAGGATGGGTCTCAGACAAGGAAGATGACGTGTGAATGACAGTGCTTTTGGCAGAACTGTTGGTGAAAAGAAAGAAGCTGACATAACTCTCCTCTAGGGCCAAACACCATATCAATTTCATCCCTCCGTCatacactgccccccccccccccccccccccccctctggatGCAGTGTCTCTAGTTCCACTGTACCATTGCAACATCATATTTTAACACTAGAACAGTGCCTGGGCATATCCACTTACGCACCAGGGGTGAGAGGGACAGGATGGAGGTGATACAGGGAGTATTGACGAGACCCTTACCTCTGAAATCCCCTGTTCCTCCCCCAGCCCCATCTCTGGAGTGTCAGTGATTGTAGAGAGACACAAAAGAGGGTGTTGCTGAGATAGCTTGGTGGTGGTGGAGCGGGTGGGGTTATATGGTGTCTCCCTGATGACAGCCCTCTCCAAGAAAccctgggggtgggggggcttggaaggtggaggggggggggggggggggggggggggggttggagggttggaggagaggaggagaggaggagggttgaaggagaggaggagaggacgagggTTGACGGGTGGCTGTCACAACACTAACTGTTAATcccagctctctccctctgcttagCACCCCTGCTGACATAAACAAACTGACACCCCTGTCACCTACCATTCAGTACAGATGGTGACTACAGACTGCTTTTCATTCTTCACTAAAGACAAACCGTAACCGTCTTCTAATGTGCCTGCCTTTCTTTCACATCTCCCTTCCCTCTGCTTTGCCTTCGTGTCTTCACCCGTCAGCTCTAGATACTATTTCTTCTCTTCTTGTCTGCCTCTTACAGTAGCCACAGCTGAACCACACTGCAGTAGGTCTAAGAAAAACCTACAAGATGTGAATATAACCTTAGTTTTGACCAACATTATGACAACCCGCTAACAACAATAAAGCCATTTTGTTTGATTAGTA

Function

NR:

description
glial fibrillary acidic protein

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K05640 GFAP; glial fibrillary acidic protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558456.2 True 2970 mRNA 0.54 9 49448242 49456279

Neighbor

gene id symbol gene type direction distance location
kcnh2 kcnh2 coding downstream 18891 49388158 ~ 49429351 (-)
LOC110486683 ccdc47 coding downstream 78383 49365418 ~ 49369859 (-)
setd1a LOC106585476 coding downstream 87008 49346540 ~ 49361234 (-)
hsd3b7 hsd3b7 coding downstream 108385 49326722 ~ 49339857 (-)
LOC110486679 LOC106601593 coding downstream 135253 49300153 ~ 49312989 (-)
LOC110486686 map3k3 coding upstream 11487 49467766 ~ 49485525 (-)
LOC110486687 LOC106601611 coding upstream 30538 49486817 ~ 49504819 (-)
LOC110486688 LOC106601605 coding upstream 58771 49515050 ~ 49522522 (-)
LOC110486692 LOC106606873 coding upstream 74492 49530771 ~ 49533590 (-)
LOC118938314 NA coding upstream 81290 49537199 ~ 49544276 (-)
G1183595 NA non-coding downstream 3520 49444364 ~ 49444722 (-)
G1183592 NA non-coding downstream 8889 49439151 ~ 49439353 (-)
G1183590 NA non-coding downstream 12261 49435768 ~ 49435981 (-)
G1183588 NA non-coding downstream 15071 49432937 ~ 49433171 (-)
G1183297 NA non-coding downstream 122715 49325027 ~ 49325527 (-)
G1183604 NA non-coding upstream 5213 49461492 ~ 49461846 (-)
G1183605 NA non-coding upstream 6220 49462499 ~ 49462737 (-)
G1183609 NA non-coding upstream 17153 49473432 ~ 49473756 (-)
G1183620 NA non-coding upstream 55459 49511738 ~ 49512014 (-)
LOC110485205 LOC106597701 other downstream 470834 48959315 ~ 49053966 (-)
LOC110486656 syt3 other downstream 511785 48875671 ~ 48936482 (-)
G1183337 NA other downstream 780160 48667788 ~ 48668082 (-)
G1183225 NA other downstream 977259 48435826 ~ 48470983 (-)
G1183706 NA other upstream 229059 49685338 ~ 49688456 (-)
LOC110486698 LOC106601594 other upstream 379384 49831067 ~ 49853671 (-)
G1184986 NA other upstream 1170368 50626647 ~ 50628539 (-)

Expression


Co-expression Network