LOC110486688 (LOC106601605)


Basic Information

Item Value
gene id LOC110486688
gene name LOC106601605
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 49515050 ~ 49522522 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558461.2
ATGAACTGGAGCAAGGGTGGCCCAAGTGGTAAGCGAGGGTTCGGTTTTGGAGGATTTTcccttggtggtggtggtggtggaggaggaaagaaAGAAGAACTTCACGTGCCTCAGAAATCCCACACGTCCTTCGGAGGCGCAGGGACAGCTGGAGGTTATGGCAAGAACCAGCAACTCCCTGCCTTCTACAAGATAGGAACAAAAAGAGCAAATTTTGATGAAGAGAATGCATATTTTGAAGATGATGAAGAGGAGTCAAGCAGCACAGATTTGCCATATATCCCAGCTGAGAACTCCCCCACACGGCAACAATTCCGTTCTGGAGGGGGCTCAGACAGTGAGGATGATCCTCTGGATGCCTTCATGGCCCAAGTGGAGGACCAAGCAGCTAAAGACATGAAGAAACTGGAGGAAAAAGAGAAGGAAAAGAAGGTTGAAAAGGGTATACGTGATGACATTGAAGAGGAAGATGAACAAGAAGCCTACTTCCGCTACATGGCAGAGAATCCCACAGCTGGGCTGACCGCAGAGGATGAGGATGAGAACATAGACTATGACAGTGATGGGAATCCCATTCCCCCCACCACTAAGAAGATCATCATGCCCCTGCCCCCGATGGACCACTCTGAGATTGACTACCCACCTTTTGAGAGGAACTTCTACAACGAGCATGAGGAGCTTCTCAGCCTGACAGGCACCGAGGTGTTTGAGCTGAGACACAAACTCAACCTGCGGGTGTCTGGTGCCGCCCCTCCTAAACTCTCCACCAGCTTCGCCCACTTTGGGTTTGACGAGCAGCTGATGCACATAATCCGCAAGTCGGAGTACACTCAGCCAACACCTATTCAGTGCCAGGGAGTTCCCATTGCCCTGAGTGGGCGTGACATGATTGGCATTGCGAAAACTGGTAGTGGCAAGACTGCAGCCTTCATCTGGCCCATGCTAGTTCACATCATGGACCAGAAGGAACTGGAGACTGGAGAGGGGCCCATCGCAGTCATTGTGTGCCCCACCAGGGAGCTCTGTCAGCAGATCCATGCGGAGTGTAAGCGTTTTGGGAAAGCCTACTCCCTGCGCTCGGTGGCGGTGTATGGAGGAGGCAGCATGTGGGAACAGGCCAAGGCTCTTCAGGAGGGGGCAGAGATTGTTGTGTGCACCCCGggtcgtctGATTGACCATGTGAAAAAGAAGGCCACCTCTCTGCAGAGAGTGACATACCTGGTGTTTGATGAGGCAGATAGAATGTTTGATATGGGCTTTGAGTATCAAGTGAGATCCATTGCCAGCCATGTCCGACCTGATCGACAGACTCTTCTGTTCAGCGCCACCTTCCGTAAGAAGATTGAGAGGCTGGCTAGAGATATCCTGGTGGACCCCATCCGCGTGGTGCAGGGAGACATCGGGGAGGCCAATGAGGATGTGACCCAGGTAGTGGAGATCATGCCCAGTGGGGTGGAGAAGTGGGGCTGGCTGACCCGCCGCCTGGTGGAGTTTACCTCCTCTGGCTCTGTACTTATCTTCGTCACCAAGAAGGCCAACTGTGAAGAGCTGGCCACCAACCTGACCCAGGAGGGCCACAGCCTGGGCCTGCTGCACGGAGACATGGACCAGAGTGAGAGGAACAAGGTCATCGCTGACTTCAAGAAGAAGAGTCTGCCCGTGCTGGTGGCCACCGACGTGGCAGCCCGTGGTCTGGATATCCCTTCAATACGCACAGTAGTGAACTATGACGTGGCTCGGgacatcgacacacacacacaccgaattGGCCGAACAGGTCGTGCTGGAGAAAAGGGTGTTGCCTACACCCTTCTCACCAGTAAAGACACATCATTTGCAGGAGACCTTGTGCGTAACCTGGAGGGAGCCAATCAAAGTGTCTCTAAGGAGCTAATGGACTTGGCAATGCAGAATCCCTGGTTCAGGAAATCACGCTTCAAGGGCGGCAAAGGGAAGAAGCTAAACATTGGAGGAGGTGGTCTGGGCTACAGAGAGAGGCCAGGATTGGGAGCTGAAAGTTCTGAGCGTAGTGGTGGTGCTGCCATGGGTAACTATGAGGGCTACAGCAAGCCTACCGGAGCCATGGGAGACCGCATGTCAGCAATGAAGTCAGCCTTCCAGTCTCAGTATAAGAACCACTTTGTGGCGGCGTCCGGCATGGTTCCTAAACTCACCACTAAGTCCAGTAGCTCTTCAGGCTGGACCAGCGCTGGAAGTCTGAGCTCCGTCCCCACCGGGGCCCCTGAGGGCCCAGATCGGCCCCGTGGGCCCCCCTCCTTAGCCATGGCCCCTCCAGCAGTCCTCGGCATGGGCACCAAGATGGCAGGCTTCACCAGCGCTGGCTCCCTGAGCTCTGTGTCAGACAGCCAGGCCACTGCTCCTCAGGGGAATGCCGCCCCACCCTCACCCAGGGAAGGGCCCCGTGACAGACATGGTGATGACAGGAGTCGCCATGGAGATGGCCACTACCgtgacaggagagacaggagcgaGCGGCACAGTGGCGGGGGAGAGCGGGACCGCTACGGGGAGCGGGACCGCCACGCAGACCGCGACAGATACGGGGACAAGGATCGCCATGGCAGCAGCGGGCGCCATGGCGATAGTCGTAATGGAGACGGAAGTagaagggacagagagcgagacgatTGTAGAGGTGACAGGGAGAGTGGAGACAGAGCAGGGAGTGAAGGAAGGGGGGACAGAGCTGAGGGGAAAGGAGACAAAGAGGAAGACAGCTTTGCAGTCCCAGATCCACCAAAACGTAAAAAGAGTAGGTGGGACAACTAAAGCACAAAACACATCACCTGTAAAGCAACCAACCAACTGTTCTTAGATGAGCATGCCTAGTCTGTAGATGCACAGCTGGTCATTTCAGCTGAAACATGCACAGAATTTCAAGGGTTAATGTGTGAACCGACCCTACTGCGCGGTCTGAATACAAGGGGAAAGATATGCTATCCTGCATTGGTTGGGGATTCAGAAACATGGCTCCTGATTGTCAGCTTGTCTGAAGAAGTGTTGAGATTTAGGATAGAGTTCCACTCTACTGTGCACGGAGAAAGAAATCTACTGTAAATATACCATCCAGATAGTTTAAACCTCACCATAAGTGAGATGATCAATCTTTCTGGTCAATAGAAGGGAGCAGTGGAGCTGTTATGCAGTCCTGAAGCCACAGAAAACACCTGTGATTGAGATGTCTGTTGTATTCTTACGTCCACCCCCCTGTTGTTCTAGTTAAACTCTTAGCCCTGAGTAACCCAATAGCCCTATTGGACTAAATGTGAGTGTATATTATCAGCCCACGTTAATGACAGATCTCCTTTTTTTATTATAAGTGTACTACTTCCTGTGAatccatgtgtgtttgtgaacTTTGCAGCTTGTATTCACTTCTTAGTAAAGTGCCTCTCTGTCACTTAGGTGTTTTTTAATGCTTTTGAAAGTggagtgtatgtaaaatgtatttgtTCATTTTTGTGTGAGGCTACGCTTGAGTTCATTCACAGGAGGATGTCAAGtatttttgatttaaaaaaaatggcttTGGCAGTTTATTTTGTTTGTCTATAGTCTCCTTTTCTGTTTGTAATTTGTCAATGGCAGTTCTATAAGTGTGCATTCTAAACGTATCTGCAGCTGACACAGCAGTTCTGAACTGTAATAAATATAAATTCACTTGGTCCCACATTTGTCACCACTACATTTTGACACCTGATATTGTAGAAGTGGTTATATGCTTGTGAAAAACGACTCAAGCGCCATTACATTCTGTTTCAAAAGCTTCCATTTTGGAAGCGGCTTCTGTCTTGAAAATGACTAGTCTTAGGCATGATAATACCCGTGAGATTCTCTGTTATATCTGTCATTTGCACACAAGCTGTGACATTGTGAGGATATAATTGGCAATTCCTTTTTGTATTTAACCCTTGATGCATTTTTGTTCCTCGGTGTACATGTAACTTCCATAGACAATAGGGTTAAGACTGAGTAGATACATGTGAAAAAACAGTGGTCTAATTTTTGTTAATAAAATCATGTGGTTTTTA
>XM_021558460.2
GTTGTTGTGAGAAGCAATCCGTCGCGCGTAATCTACGTCTACACACGGTAATGACGCAAAACACTTTCGAGTCGCGCTGTGAGATTTGGCAGTGGTAAACATATCTTTCTTGGTGGTGAAAACAGGACAGCTATGAACTGGAGCAAGGGTGGCCCAAGTGGTAAGCGAGGGTTCGGTTTTGGAGGATTTTcccttggtggtggtggtggtggaggaggaaagaaAGAAGAACTTCACGTGCCTCAGAAATCCCACACGTCCTTCGGAGGCGCAGGGACAGCTGGAGGTTATGGCAAGAACCAGCAACTCCCTGCCTTCTACAAGATAGGAACAAAAAGAGCAAATTTTGATGAAGAGAATGCATATTTTGAAGATGATGAAGAGGAGTCAAGCAGCACAGATTTGCCATATATCCCAGCTGAGAACTCCCCCACACGGCAACAATTCCGTTCTGGAGGGGGCTCAGACAGTGAGGATGATCCTCTGGATGCCTTCATGGCCCAAGTGGAGGACCAAGCAGCTAAAGACATGAAGAAACTGGAGGAAAAAGAGAAGGAAAAGAAGGTTGAAAAGGGTATACGTGATGACATTGAAGAGGAAGATGAACAAGAAGCCTACTTCCGCTACATGGCAGAGAATCCCACAGCTGGGCTGACCGCAGAGGATGAGGATGAGAACATAGACTATGACAGTGATGGGAATCCCATTCCCCCCACCACTAAGAAGATCATCATGCCCCTGCCCCCGATGGACCACTCTGAGATTGACTACCCACCTTTTGAGAGGAACTTCTACAACGAGCATGAGGAGCTTCTCAGCCTGACAGGCACCGAGGTGTTTGAGCTGAGACACAAACTCAACCTGCGGGTGTCTGGTGCCGCCCCTCCTAAACTCTCCACCAGCTTCGCCCACTTTGGGTTTGACGAGCAGCTGATGCACATAATCCGCAAGTCGGAGTACACTCAGCCAACACCTATTCAGTGCCAGGGAGTTCCCATTGCCCTGAGTGGGCGTGACATGATTGGCATTGCGAAAACTGGTAGTGGCAAGACTGCAGCCTTCATCTGGCCCATGCTAGTTCACATCATGGACCAGAAGGAACTGGAGACTGGAGAGGGGCCCATCGCAGTCATTGTGTGCCCCACCAGGGAGCTCTGTCAGCAGATCCATGCGGAGTGTAAGCGTTTTGGGAAAGCCTACTCCCTGCGCTCGGTGGCGGTGTATGGAGGAGGCAGCATGTGGGAACAGGCCAAGGCTCTTCAGGAGGGGGCAGAGATTGTTGTGTGCACCCCGggtcgtctGATTGACCATGTGAAAAAGAAGGCCACCTCTCTGCAGAGAGTGACATACCTGGTGTTTGATGAGGCAGATAGAATGTTTGATATGGGCTTTGAGTATCAAGTGAGATCCATTGCCAGCCATGTCCGACCTGATCGACAGACTCTTCTGTTCAGCGCCACCTTCCGTAAGAAGATTGAGAGGCTGGCTAGAGATATCCTGGTGGACCCCATCCGCGTGGTGCAGGGAGACATCGGGGAGGCCAATGAGGATGTGACCCAGGTAGTGGAGATCATGCCCAGTGGGGTGGAGAAGTGGGGCTGGCTGACCCGCCGCCTGGTGGAGTTTACCTCCTCTGGCTCTGTACTTATCTTCGTCACCAAGAAGGCCAACTGTGAAGAGCTGGCCACCAACCTGACCCAGGAGGGCCACAGCCTGGGCCTGCTGCACGGAGACATGGACCAGAGTGAGAGGAACAAGGTCATCGCTGACTTCAAGAAGAAGAGTCTGCCCGTGCTGGTGGCCACCGACGTGGCAGCCCGTGGTCTGGATATCCCTTCAATACGCACAGTAGTGAACTATGACGTGGCTCGGgacatcgacacacacacacaccgaattGGCCGAACAGGTCGTGCTGGAGAAAAGGGTGTTGCCTACACCCTTCTCACCAGTAAAGACACATCATTTGCAGGAGACCTTGTGCGTAACCTGGAGGGAGCCAATCAAAGTGTCTCTAAGGAGCTAATGGACTTGGCAATGCAGAATCCCTGGTTCAGGAAATCACGCTTCAAGGGCGGCAAAGGGAAGAAGCTAAACATTGGAGGAGGTGGTCTGGGCTACAGAGAGAGGCCAGGATTGGGAGCTGAAAGTTCTGAGCGTAGTGGTGGTGCTGCCATGGGTAACTATGAGGGCTACAGCAAGCCTACCGGAGCCATGGGAGACCGCATGTCAGCAATGAAGTCAGCCTTCCAGTCTCAGTATAAGAACCACTTTGTGGCGGCGTCCGGCATGGTTCCTAAACTCACCACTAAGTCCAGTAGCTCTTCAGGCTGGACCAGCGCTGGAAGTCTGAGCTCCGTCCCCACCGGGGCCCCTGAGGGCCCAGATCGGCCCCGTGGGCCCCCCTCCTTAGCCATGGCCCCTCCAGCAGTCCTCGGCATGGGCACCAAGATGGCAGGCTTCACCAGCGCTGGCTCCCTGAGCTCTGTGTCAGACAGCCAGGCCACTGCTCCTCAGGGGAATGCCGCCCCACCCTCACCCAGGGAAGGGCCCCGTGACAGACATGGTGATGACAGGAGTCGCCATGGAGATGGCCACTACCgtgacaggagagacaggagcgaGCGGCACAGTGGCGGGGGAGAGCGGGACCGCTACGGGGAGCGGGACCGCCACGCAGACCGCGACAGATACGGGGACAAGGATCGCCATGGCAGCAGCGGGCGCCATGGCGATAGTCGTAATGGAGACGGAAGTagaagggacagagagcgagacgatTGTAGAGGTGACAGGGAGAGTGGAGACAGAGCAGGGAGTGAAGGAAGGGGGGACAGAGCTGAGGGGAAAGGAGACAAAGAGGAAGACAGCTTTGCAGTCCCAGATCCACCAAAACGTAAAAAGAGTAGGTGGGACAACTAA

Function

NR:

description
ATP-dependent RNA helicase DDX42-like

GO: NA

KEGG:

id description
K12835 DDX42, SF3B125; ATP-dependent RNA helicase DDX42

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558461.2 False 4052 mRNA 0.50 17 49515050 49521957
XM_021558460.2 True 2922 mRNA 0.55 18 49516312 49522522

Neighbor

gene id symbol gene type direction distance location
LOC110486687 LOC106601611 coding downstream 10231 49486817 ~ 49504819 (-)
LOC110486686 map3k3 coding downstream 29525 49467766 ~ 49485525 (-)
LOC100136168 LOC106585555 coding downstream 58771 49448242 ~ 49456279 (-)
kcnh2 kcnh2 coding downstream 85699 49388158 ~ 49429351 (-)
LOC110486683 ccdc47 coding downstream 145191 49365418 ~ 49369859 (-)
LOC110486692 LOC106606873 coding upstream 8249 49530771 ~ 49533590 (-)
LOC118938314 NA coding upstream 15047 49537199 ~ 49544276 (-)
LOC110486698 LOC106601594 coding upstream 308545 49831067 ~ 49853671 (-)
LOC110486699 LOC106601618 coding upstream 448200 49970722 ~ 50040333 (-)
si:ch211-214j24.15 LOC106606868 coding upstream 536512 50059034 ~ 50067398 (-)
G1183620 NA non-coding downstream 3036 49511738 ~ 49512014 (-)
G1183609 NA non-coding downstream 41294 49473432 ~ 49473756 (-)
G1183605 NA non-coding downstream 52313 49462499 ~ 49462737 (-)
G1183604 NA non-coding downstream 53204 49461492 ~ 49461846 (-)
G1183624 NA non-coding upstream 1062 49523584 ~ 49524166 (-)
G1183641 NA non-coding upstream 47452 49569974 ~ 49570178 (-)
G1183630 LOC106601597 non-coding upstream 49196 49571718 ~ 49577233 (-)
G1183629 NA non-coding upstream 57772 49580294 ~ 49663941 (-)
G1183653 NA non-coding upstream 84937 49607459 ~ 49632702 (-)
setd1a LOC106585476 other downstream 157836 49346540 ~ 49361234 (-)
LOC110485205 LOC106597701 other downstream 537642 48959315 ~ 49053966 (-)
LOC110486656 syt3 other downstream 578593 48875671 ~ 48936482 (-)
G1183337 NA other downstream 846968 48667788 ~ 48668082 (-)
G1183706 NA other upstream 162816 49685338 ~ 49688456 (-)
G1184986 NA other upstream 1104125 50626647 ~ 50628539 (-)
LOC110485208 LOC106606837 other upstream 1234116 50732097 ~ 50824433 (-)

Expression


Co-expression Network