LOC110486693 (rundc3a)


Basic Information

Item Value
gene id LOC110486693
gene name rundc3a
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 49533020 ~ 49551503 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941399.1
ATAAAGACTGATTCGTTTGTAGTCAGCCATGCGACGTTACCCTTTGAATCATAGGGTTTGCTGAACCCGTCTTTTTTTCTTTTCTGACAACGGCATTCTTGTCTTCGTCACTGTTGCCATCTGACAATGGAGGAAAGCATCAGCATATTCTCGGTGAAGACACTCCTGGAAAAGTACACAGCCGAGCCCATCGATGACTCATCCGAGGAGTTTGTTAACTTCGCTGCAATCTTGGAACACATCCTCAGCCACCGCTTCAAAGGTAACATGGCAGGTCCAGGAAGCTGGTTCATCTCAGATGGCCAGCGAAGTTTCTGGGACTACATCCGGCTGGCATGCAGCAAGGTGCAGAACAACTGCATCGCCAGCATCGAAAACATTGAGAACATCAGCACCTCACGAGCCAAGGGTCGGGCATGGATCCGTGTGGCGCTGATGGAGAAGCGTCTGTCTGAGTATGTGGCCACAGCCCTGAGGGACACACGGACAACCAGGAGGTTCTATGATGATGGAGCCATTATACTGAGAGAGGAGGCCACTGTTCTGACAGGCATGCTCATTGGCCTCAGTGCCATAGACTTCAGTTTTTGCTTGAAGGGGGAGGCGCTGGATGGTAAGTCCCCTGCTGTGATTGACTTCACACCTTACCTGAAGTTCACTCagagCTATGACTACCTGAGTGATGAGGATGACCGGTGCAGTGTGGACAGCAGTGCCAGTGACGAAAGTGTCCCAGAACACCCATACATCCCCCTGGTCACTGACGAGGAGAGCTGGAGGAACAAGTGTCGCAAGATGGAGCAGAGGTTTAAGATTGTGTATGCACAGAAGGGCTACCTGGAGGAGCTGGTGCGTCTGCGGGAGTCCCAGCTGAAGAACGTGGAGACGGAGAACAAGAAGCTGAGTGCCAGGCTGGACGAGCTCAGAGTCCAGAGCCTGCAGGAGAAGAAGGAGCTGGAGTCCATCGTACTGGAGCTGCAGGCACAGCTCACTGCCCTCATCCCCTGTGATTCCTCCCACTTGACTAAGGATCTGTCCATCCCTCTGGTCAACCAGTGGCCCTCCATACGAGGCTACAACAACCAGGGGGACGTCAAGCTCTTCCGCAGGAGAAGCTTCCACAGTTTGGAGCAGCTCTCAGCTGACGTCAGTCTGAACTCTGATTCCCAGAAGACCGATGGGCAACAGAACGGAGATACAGGAAAAGACTACACCCCTTCTATGCGGGGTCTCTGTGGCTCTCTGGCCTCTCTCCCCAGCTGCAAGTCCATGTCCAGCCTCAAGTCCAGTGAGTGTCTGGTCAACATCAGCATGGAACCCAGCCCTGCACTCTCCCCCAGCTAGGGGGCGCCATGCCAACAGAGCTCTGTCTGCAAAGCGCAAAGCCAACAACCAACCAACCCCAACCGCCTGCCTCAACCTGGAGACACTCAATAGATCATGAAcatctacctacctactgtcactATTAACAGTTACCAACAAAACCCTTTTTCAACCAAACCCTTCTCCAACCAACTCCACTCAACCCACTGCTTCATGTCTGCAAAGATTAGAGGGGGAAAAGCTCTTCAATATTTCTGGATTTTTGTGTGGATTAAATTAAAGTTATAATGAAACTAAAAGGATCCTAGTTCGTCTGTGCCCCTCCTCACCCACACCCTCTCTCATATCCTCACACTGTCCATCCTGTTCTTTcactgttgtgtgtgtgaatTCCTATGTCAAAATGTTGGCCTGTATTTAATGCCTTTTGGACACATCTAACTAGCGTGATTCAAAGCTACAAAACTATCCAAAAGcatatttatttatctatttaaattctcctctcctctagatcTCCTTATCCAACTCTTTCTCTGCACCTGACACATCTGGTCATtgtactgtctgtgtgtcagtctgtcccAGCCCTGCCTCAGCCTATACTATCCTCTTTCCTGCCTGTCAAAATGACAGACAAACTGGAATGACGCACTTGCGATTAAGTCAGAACACTTGGAGGAGAAGGCTGAACTGAATTCTAACAAAAACATCAGCTATTCTTAGGTGTTTGAGTGGCTGCAGGTTGAGTGTCGCTAACATAATGGCTAGATGTGTATTTGATGCATGTGGCTGAATGATATTGGCATTGTTCCTCCATTGTACTGGGTTTTGGATGGCCTGAATCTCCAAATCATTGACCTGCTTGAGTAATCAGACATTACTGTTTAAGTATGTGTTCATGTGTGCAGCAATTGGTTACGTCTGTCTATCAACAGTTTTGTTGTCACGTTGCTTTTTATATTTTGTTGATGAATCTGATTTTATAAATCAAGTGTGCTGTTATTTTTACACATGCATATTTGGTTATTTTTGTTCAATGACCTATGCTATTAGTTGCAATAAACTGCCTTATTTTTGTTATGTCAA
>XM_036941400.1
AAGACTGATTCGTTTGTAGTCAGCCATGCGACGTTACCCTTTGAATCATAGGGTTTGCTGAACCCGTCTTTTTTTCTTTTCTGACAACGGCATTCTTGTCTTCGTCACTGTTGCCATCTGACAATGGAGGAAAGCATCAGCATATTCTCGGTGAAGACACTCCTGGAAAAGTACACAGCCGAGCCCATCGATGACTCATCCGAGGAGTTTGTTAACTTCGCTGCAATCTTGGAACACATCCTCAGCCACCGCTTCAAAGGTCCAGGAAGCTGGTTCATCTCAGATGGCCAGCGAAGTTTCTGGGACTACATCCGGCTGGCATGCAGCAAGGTGCAGAACAACTGCATCGCCAGCATCGAAAACATTGAGAACATCAGCACCTCACGAGCCAAGGGTCGGGCATGGATCCGTGTGGCGCTGATGGAGAAGCGTCTGTCTGAGTATGTGGCCACAGCCCTGAGGGACACACGGACAACCAGGAGGTTCTATGATGATGGAGCCATTATACTGAGAGAGGAGGCCACTGTTCTGACAGGCATGCTCATTGGCCTCAGTGCCATAGACTTCAGTTTTTGCTTGAAGGGGGAGGCGCTGGATGGTAAGTCCCCTGCTGTGATTGACTTCACACCTTACCTGAAGTTCACTCagagCTATGACTACCTGAGTGATGAGGATGACCGGTGCAGTGTGGACAGCAGTGCCAGTGACGAAAGTGTCCCAGAACACCCATACATCCCCCTGGTCACTGACGAGGAGAGCTGGAGGAACAAGTGTCGCAAGATGGAGCAGAGGTTTAAGATTGTGTATGCACAGAAGGGCTACCTGGAGGAGCTGGTGCGTCTGCGGGAGTCCCAGCTGAAGAACGTGGAGACGGAGAACAAGAAGCTGAGTGCCAGGCTGGACGAGCTCAGAGTCCAGAGCCTGCAGGAGAAGAAGGAGCTGGAGTCCATCGTACTGGAGCTGCAGGCACAGCTCACTGCCCTCATCCCCTGTGATTCCTCCCACTTGACTAAGGATCTGTCCATCCCTCTGGTCAACCAGTGGCCCTCCATACGAGGCTACAACAACCAGGGGGACGTCAAGCTCTTCCGCAGGAGAAGCTTCCACAGTTTGGAGCAGCTCTCAGCTGACGTCAGTCTGAACTCTGATTCCCAGAAGACCGATGGGCAACAGAACGGAGATACAGGAAAAGACTACACCCCTTCTATGCGGGGTCTCTGTGGCTCTCTGGCCTCTCTCCCCAGCTGCAAGTCCATGTCCAGCCTCAAGTCCAGTGAGTGTCTGGTCAACATCAGCATGGAACCCAGCCCTGCACTCTCCCCCAGCTAGGGGGCGCCATGCCAACAGAGCTCTGTCTGCAAAGCGCAAAGCCAACAACCAACCAACCCCAACCGCCTGCCTCAACCTGGAGACACTCAATAGATCATGAAcatctacctacctactgtcactATTAACAGTTACCAACAAAACCCTTTTTCAACCAAACCCTTCTCCAACCAACTCCACTCAACCCACTGCTTCATGTCTGCAAAGATTAGAGGGGGAAAAGCTCTTCAATATTTCTGGATTTTTGTGTGGATTAAATTAAAGTTATAATGAAACTAAAAGGATCCTAGTTCGTCTGTGCCCCTCCTCACCCACACCCTCTCTCATATCCTCACACTGTCCATCCTGTTCTTTcactgttgtgtgtgtgaatTCCTATGTCAAAATGTTGGCCTGTATTTAATGCCTTTTGGACACATCTAACTAGCGTGATTCAAAGCTACAAAACTATCCAAAAGcatatttatttatctatttaaattctcctctcctctagatcTCCTTATCCAACTCTTTCTCTGCACCTGACACATCTGGTCATtgtactgtctgtgtgtcagtctgtcccAGCCCTGCCTCAGCCTATACTATCCTCTTTCCTGCCTGTCAAAATGACAGACAAACTGGAATGACGCACTTGCGATTAAGTCAGAACACTTGGAGGAGAAGGCTGAACTGAATTCTAACAAAAACATCAGCTATTCTTAGGTGTTTGAGTGGCTGCAGGTTGAGTGTCGCTAACATAATGGCTAGATGTGTATTTGATGCATGTGGCTGAATGATATTGGCATTGTTCCTCCATTGTACTGGGTTTTGGATGGCCTGAATCTCCAAATCATTGACCTGCTTGAGTAATCAGACATTACTGTTTAAGTATGTGTTCATGTGTGCAGCAATTGGTTACGTCTGTCTATCAACAGTTTTGTTGTCACGTTGCTTTTTATATTTTGTTGATGAATCTGATTTTATAAATCAAGTGTGCTGTTATTTTTACACATGCATATTTGGTTATTTTTGTTCAATGACCTATGCTATTAGTTGCAATAAACTGCCTTATTTTTGTTATGTCAA
>XM_036941397.1
TCCATCGTTGTGCGTCAACGTAGAGCCCACTAATTAAGCATCAGCTTCTCGCGGAGAAGTGAGGACACCGGAATATATGGCATAGGCCTGCGGAGGGAGGGGTCTTGGTGGTGCTGGGCTACCGGAAGGCTCCGTACCGCTGCTGAATGGAATCCGGTTGTGTCCGAAAAGCAATGGCTATGGGTTTGACATCGAAAAAGGCATCTTCTCGGAGCTTCGGCGTGGAGCGAAAAAATCTCATCACCGTATGCAGATTCTCGGTGAAGACACTCCTGGAAAAGTACACAGCCGAGCCCATCGATGACTCATCCGAGGAGTTTGTTAACTTCGCTGCAATCTTGGAACACATCCTCAGCCACCGCTTCAAAGGTAACATGGCAGGTCCAGGAAGCTGGTTCATCTCAGATGGCCAGCGAAGTTTCTGGGACTACATCCGGCTGGCATGCAGCAAGGTGCAGAACAACTGCATCGCCAGCATCGAAAACATTGAGAACATCAGCACCTCACGAGCCAAGGGTCGGGCATGGATCCGTGTGGCGCTGATGGAGAAGCGTCTGTCTGAGTATGTGGCCACAGCCCTGAGGGACACACGGACAACCAGGAGGTTCTATGATGATGGAGCCATTATACTGAGAGAGGAGGCCACTGTTCTGACAGGCATGCTCATTGGCCTCAGTGCCATAGACTTCAGTTTTTGCTTGAAGGGGGAGGCGCTGGATGGTAAGTCCCCTGCTGTGATTGACTTCACACCTTACCTGAAGTTCACTCagagCTATGACTACCTGAGTGATGAGGATGACCGGTGCAGTGTGGACAGCAGTGCCAGTGACGAAAGTGTCCCAGAACACCCATACATCCCCCTGGTCACTGACGAGGAGAGCTGGAGGAACAAGTGTCGCAAGATGGAGCAGAGGTTTAAGATTGTGTATGCACAGAAGGGCTACCTGGAGGAGCTGGTGCGTCTGCGGGAGTCCCAGCTGAAGAACGTGGAGACGGAGAACAAGAAGCTGAGTGCCAGGCTGGACGAGCTCAGAGTCCAGAGCCTGCAGGAGAAGAAGGAGCTGGAGTCCATCGTACTGGAGCTGCAGGCACAGCTCACTGCCCTCATCCCCTGTGATTCCTCCCACTTGACTAAGGATCTGTCCATCCCTCTGGTCAACCAGTGGCCCTCCATACGAGGCTACAACAACCAGGGGGACGTCAAGCTCTTCCGCAGGAGAAGCTTCCACAGTTTGGAGCAGCTCTCAGCTGACGTCAGTCTGAACTCTGATTCCCAGAAGACCGATGGGCAACAGAACGGAGATACAGGAAAAGACTACACCCCTTCTATGCGGGGTCTCTGTGGCTCTCTGGCCTCTCTCCCCAGCTGCAAGTCCATGTCCAGCCTCAAGTCCAGTGAGTGTCTGGTCAACATCAGCATGGAACCCAGCCCTGCACTCTCCCCCAGCTAGGGGGCGCCATGCCAACAGAGCTCTGTCTGCAAAGCGCAAAGCCAACAACCAACCAACCCCAACCGCCTGCCTCAACCTGGAGACACTCAATAGATCATGAAcatctacctacctactgtcactATTAACAGTTACCAACAAAACCCTTTTTCAACCAAACCCTTCTCCAACCAACTCCACTCAACCCACTGCTTCATGTCTGCAAAGATTAGAGGGGGAAAAGCTCTTCAATATTTCTGGATTTTTGTGTGGATTAAATTAAAGTTATAATGAAACTAAAAGGATCCTAGTTCGTCTGTGCCCCTCCTCACCCACACCCTCTCTCATATCCTCACACTGTCCATCCTGTTCTTTcactgttgtgtgtgtgaatTCCTATGTCAAAATGTTGGCCTGTATTTAATGCCTTTTGGACACATCTAACTAGCGTGATTCAAAGCTACAAAACTATCCAAAAGcatatttatttatctatttaaattctcctctcctctagatcTCCTTATCCAACTCTTTCTCTGCACCTGACACATCTGGTCATtgtactgtctgtgtgtcagtctgtcccAGCCCTGCCTCAGCCTATACTATCCTCTTTCCTGCCTGTCAAAATGACAGACAAACTGGAATGACGCACTTGCGATTAAGTCAGAACACTTGGAGGAGAAGGCTGAACTGAATTCTAACAAAAACATCAGCTATTCTTAGGTGTTTGAGTGGCTGCAGGTTGAGTGTCGCTAACATAATGGCTAGATGTGTATTTGATGCATGTGGCTGAATGATATTGGCATTGTTCCTCCATTGTACTGGGTTTTGGATGGCCTGAATCTCCAAATCATTGACCTGCTTGAGTAATCAGACATTACTGTTTAAGTATGTGTTCATGTGTGCAGCAATTGGTTACGTCTGTCTATCAACAGTTTTGTTGTCACGTTGCTTTTTATATTTTGTTGATGAATCTGATTTTATAAATCAAGTGTGCTGTTATTTTTACACATGCATATTTGGTTATTTTTGTTCAATGACCTATGCTATTAGTTGCAATAAACTGCCTTATTTTTGTTATGTCAA
>XM_036941398.1
TCGTTGTGCGTCAACGTAGAGCCCACTAATTAAGCATCAGCTTCTCGCGGAGAAGTGAGGACACCGGAATATATGGCATAGGCCTGCGGAGGGAGGGGTCTTGGTGGTGCTGGGCTACCGGAAGGCTCCGTACCGCTGCTGAATGGAATCCGGTTGTGTCCGAAAAGCAATGGCTATGGGTTTGACATCGAAAAAGGCATCTTCTCGGAGCTTCGGCGTGGAGCGAAAAAATCTCATCACCGTATGCAGATTCTCGGTGAAGACACTCCTGGAAAAGTACACAGCCGAGCCCATCGATGACTCATCCGAGGAGTTTGTTAACTTCGCTGCAATCTTGGAACACATCCTCAGCCACCGCTTCAAAGGTCCAGGAAGCTGGTTCATCTCAGATGGCCAGCGAAGTTTCTGGGACTACATCCGGCTGGCATGCAGCAAGGTGCAGAACAACTGCATCGCCAGCATCGAAAACATTGAGAACATCAGCACCTCACGAGCCAAGGGTCGGGCATGGATCCGTGTGGCGCTGATGGAGAAGCGTCTGTCTGAGTATGTGGCCACAGCCCTGAGGGACACACGGACAACCAGGAGGTTCTATGATGATGGAGCCATTATACTGAGAGAGGAGGCCACTGTTCTGACAGGCATGCTCATTGGCCTCAGTGCCATAGACTTCAGTTTTTGCTTGAAGGGGGAGGCGCTGGATGGTAAGTCCCCTGCTGTGATTGACTTCACACCTTACCTGAAGTTCACTCagagCTATGACTACCTGAGTGATGAGGATGACCGGTGCAGTGTGGACAGCAGTGCCAGTGACGAAAGTGTCCCAGAACACCCATACATCCCCCTGGTCACTGACGAGGAGAGCTGGAGGAACAAGTGTCGCAAGATGGAGCAGAGGTTTAAGATTGTGTATGCACAGAAGGGCTACCTGGAGGAGCTGGTGCGTCTGCGGGAGTCCCAGCTGAAGAACGTGGAGACGGAGAACAAGAAGCTGAGTGCCAGGCTGGACGAGCTCAGAGTCCAGAGCCTGCAGGAGAAGAAGGAGCTGGAGTCCATCGTACTGGAGCTGCAGGCACAGCTCACTGCCCTCATCCCCTGTGATTCCTCCCACTTGACTAAGGATCTGTCCATCCCTCTGGTCAACCAGTGGCCCTCCATACGAGGCTACAACAACCAGGGGGACGTCAAGCTCTTCCGCAGGAGAAGCTTCCACAGTTTGGAGCAGCTCTCAGCTGACGTCAGTCTGAACTCTGATTCCCAGAAGACCGATGGGCAACAGAACGGAGATACAGGAAAAGACTACACCCCTTCTATGCGGGGTCTCTGTGGCTCTCTGGCCTCTCTCCCCAGCTGCAAGTCCATGTCCAGCCTCAAGTCCAGTGAGTGTCTGGTCAACATCAGCATGGAACCCAGCCCTGCACTCTCCCCCAGCTAGGGGGCGCCATGCCAACAGAGCTCTGTCTGCAAAGCGCAAAGCCAACAACCAACCAACCCCAACCGCCTGCCTCAACCTGGAGACACTCAATAGATCATGAAcatctacctacctactgtcactATTAACAGTTACCAACAAAACCCTTTTTCAACCAAACCCTTCTCCAACCAACTCCACTCAACCCACTGCTTCATGTCTGCAAAGATTAGAGGGGGAAAAGCTCTTCAATATTTCTGGATTTTTGTGTGGATTAAATTAAAGTTATAATGAAACTAAAAGGATCCTAGTTCGTCTGTGCCCCTCCTCACCCACACCCTCTCTCATATCCTCACACTGTCCATCCTGTTCTTTcactgttgtgtgtgtgaatTCCTATGTCAAAATGTTGGCCTGTATTTAATGCCTTTTGGACACATCTAACTAGCGTGATTCAAAGCTACAAAACTATCCAAAAGcatatttatttatctatttaaattctcctctcctctagatcTCCTTATCCAACTCTTTCTCTGCACCTGACACATCTGGTCATtgtactgtctgtgtgtcagtctgtcccAGCCCTGCCTCAGCCTATACTATCCTCTTTCCTGCCTGTCAAAATGACAGACAAACTGGAATGACGCACTTGCGATTAAGTCAGAACACTTGGAGGAGAAGGCTGAACTGAATTCTAACAAAAACATCAGCTATTCTTAGGTGTTTGAGTGGCTGCAGGTTGAGTGTCGCTAACATAATGGCTAGATGTGTATTTGATGCATGTGGCTGAATGATATTGGCATTGTTCCTCCATTGTACTGGGTTTTGGATGGCCTGAATCTCCAAATCATTGACCTGCTTGAGTAATCAGACATTACTGTTTAAGTATGTGTTCATGTGTGCAGCAATTGGTTACGTCTGTCTATCAACAGTTTTGTTGTCACGTTGCTTTTTATATTTTGTTGATGAATCTGATTTTATAAATCAAGTGTGCTGTTATTTTTACACATGCATATTTGGTTATTTTTGTTCAATGACCTATGCTATTAGTTGCAATAAACTGCCTTATTTTTGTTATGTCAA

Function

symbol description
rundc3a Predicted to enable GTPase regulator activity. Predicted to be involved in positive regulation of cGMP-mediated signaling. Located in intracellular membrane-bounded organelle.

NR:

description
RUN domain-containing protein 3A-like isoform X4

GO: NA

KEGG:

id description
K24787 RUNDC3; RUN domain-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941399.1 False 2415 mRNA 0.48 11 49533020 49551503
XM_036941400.1 False 2400 mRNA 0.48 11 49533023 49551503
XM_036941397.1 False 2522 mRNA 0.49 11 49533937 49551503
XM_036941398.1 True 2506 mRNA 0.49 11 49533941 49551503

Neighbor

gene id symbol gene type direction distance location
LOC110486690 LOC106606872 coding upstream 2287 49522530 ~ 49530733 (+)
LOC110486684 LOC106601519 coding upstream 148498 49370238 ~ 49384522 (+)
LOC100136718 mlc-2 coding upstream 233769 49295336 ~ 49299251 (+)
LOC110486677 LOC106601591 coding upstream 248904 49281106 ~ 49284116 (+)
LOC110486678 NA coding upstream 266253 49263529 ~ 49266771 (+)
LOC110486691 LOC106601608 coding downstream 219 49551722 ~ 49557177 (+)
LOC110486695 LOC106601598 coding downstream 7285 49558788 ~ 49567825 (+)
LOC110486696 LOC106601597 coding downstream 20005 49571508 ~ 49577269 (+)
ndua4 ndua4 coding downstream 28821 49580324 ~ 49584562 (+)
LOC110486697 spop coding downstream 55976 49607479 ~ 49713614 (+)
G1182795 NA non-coding upstream 24110 49508693 ~ 49508910 (+)
G1182784 NA non-coding upstream 64211 49467765 ~ 49468809 (+)
G1182773 NA non-coding upstream 65939 49466691 ~ 49467081 (+)
G1182772 NA non-coding upstream 66811 49465715 ~ 49466209 (+)
G1182771 NA non-coding upstream 67364 49464439 ~ 49465656 (+)
G1182809 NA non-coding downstream 16860 49568363 ~ 49568629 (+)
G1183727 NA non-coding downstream 163623 49715126 ~ 49715459 (+)
G1183729 NA non-coding downstream 180843 49732346 ~ 49732859 (+)
G1183730 NA non-coding downstream 181876 49733379 ~ 49733590 (+)
G1183737 NA non-coding downstream 184761 49736264 ~ 49736493 (+)
G1182742 NA other upstream 106797 49419570 ~ 49426223 (+)
LOC110486671 LOC100335037 other upstream 330330 49198846 ~ 49202693 (+)
G1182629 NA other upstream 414323 49114975 ~ 49118697 (+)
G1183819 NA other downstream 280718 49832221 ~ 49835014 (+)
G1183875 NA other downstream 331318 49882821 ~ 49883435 (+)
G1184435 LOC106606845 other downstream 1434310 50985813 ~ 50986566 (+)
LOC110487554 LOC106601638 other downstream 1832669 51384172 ~ 51394113 (+)

Expression


Co-expression Network