LOC110486695 (LOC106601598)


Basic Information

Item Value
gene id LOC110486695
gene name LOC106601598
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 49558788 ~ 49567825 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941403.1
TTGTAAGTAAATTGGACACGAGAATTTAGCTCGTTGAGCTGTTGTCAGTTTCAGACAAGATTTGGCAATATTTTGTCAACTGTGTAGCCTGATAACTTTATGTAAACTAAGTTATAATAGCCAACGGTGGATGATCAGGTTGGGCATTTAATAGTTTTATTGTGAACTGAATGCAGGGCTAATATtttagatttatttattttagttcGAGAGAAAAGTTGGAGGAAATCATGGTCATCACAAAAGAAGGCTGGCTGCTAGCAAGAAGCTAACCATGTTGGATACTTAACATAAATATTGAAATACTGGCTAATTTAAACTGAAGAAGAGGTAGCTAAAACTACTGATTGTGATCTTTGATACGGTTGCCTGTCGAAGTGTTTTCGGCTCCTTCATTTTGcacttggagggggggggggggggggatgtcgtGCAGAAGTGAAGCGGCTCGGGGGGGCACCCCTTGTCTACAACCACTTCGAGCCACTGTCCCATTCCAGCTTCACAACAAAGCACAACCGCGCTGCAAAGATTCCAAGACTGGCGACAGGAGCAAGTCTCGCCCCCCAAAGCCGACCATTCGTCGCACCCTGTCCCTGGATACAATTGTTGGACCATATCTGCAGGGCCGGTGGCCCAAGGAGGCAGAGAGCCAAGGAGTCACCTGTGTCAATGACAAGGCCACACAGACTCCCAGCTCCTGGGCAGAGGAGACTCGGGGAAGAAGAAGTGTTGGCGGACACAAACGCTCAGCATCATGGGGCAGCGCTGAACACTTGAGGGATACGGTGCCCCTGAGCAGGTTGGCCCCTCGGCTGCGGCGCAGTGTGGAAGGTCTGAATCTGGAGCTGGAGGGGGTCTTTGTGTCAGAGACACCTGAGGACCAGCACAAGATCCTGGATGTCCCAGATGGCCACAGAGCCCCAGTTCCTGCCCAGAGGTGCAGCAGTGGTACCCAGAGTGAACCCTCCCCTGCCTCGTTCGACCCTGCTTTGCTCTCTCCATCTGAGTCTCCCTGTTCCCTGAACCCAGCTCTACTCTCCCCATCTCAGTCTCCCTGCCCCATGGGAGAGCCAGACCCTGTGGACTGTGAGACTGTGTGCCCCTCTCCAGTAGTTTTGGACCCCTCCCTGTTGCAGCCCTCCTCCCCTCGTCCCAACAAGACCTACTCCTTCCAGAGGGAGCCCCCTGAAGGCTGTGAGCGAGTACGCGTAGTGTGTGAAGAGGCTATGTATCCCTGTCAGAGAGAGCCTCTCCTCCAGGTATCCTGCCCTGACCCCAACAAGGTGAATTTCACTCCCCATGGAGGCTCTGCCTTCTGCCCTGTCAGTCTGCTCAAGCCCTTGCTGCCCTCCATGGACCTCCTGTTCCGCGGCCTGTCAGTCTCGCCTGTCACAGGCTGCTCAGGTCAAGGCTCTGCCCCCTACCAGACAGTTGGGCATTTGGTTGGGGGCTACATGAGTGGACCCCTCCAGGACACAACCACCATGTGACTGTGGAGATGGGGTTGTTTTCAGACTAATGAGGATGGATTTATCCTAATAGATTAAATCAAGATGGCTGCCACCACCTTGTCAGAGACTGTTATGACAAGCCTCCAGATCTATTCAACTAAGATCAACAAAAAGAGACCTCTACAGTGGGTCCTCTGTGGGATCAGGATCAAATCTGTCATTGGTGTTCTATCCTGATTCTCAGAGGGACTTGCTGCTCTGGGTACATTGATAGTCACTTGCCCCCTTGGTTAGGGGGGTAAATAAATTGTACAAATGTTTGTGTGACATATTTTCATTCTACACAACTTGGCCTTGCTCTGATACCCTTAGATTTGTTATAGCTAGAGTGTGGAGTCAGAGATGTACTAATTAGTGATGCCCGGGTCCCCGCGGTTATATCTGTGGGGTGGATGGTTTTAGagtcattaaatattgtgtggcGGGTGGCAGGctggttgaataaagagaaataATACCTtttaaaaaatc
>XM_021558473.2
TGTAAGTAAATTGGACACGAGAATTTAGCTCGTTGAGCTGTTGTCAGTTTCAGACAAGATTTGGCAATATTTTGTCAACTGTGTAGCCTGATAACTTTATGTAAACTAAGTTATAATAGCCAACGGTGGATGATCAGGTTGGGCATTTAATAGTTTTATTGTGAACTGAATGCAGGGCTAATATtttagatttatttattttagttcGAGAGAAAAGTTGGAGGAAATCATGGTCATCACAAAAGAAGGCTGGCTGCTAGCAAGAAGCTAACCATGTTGGATACTTAACATAAATATTGAAATACTGGCTAATTTAAACTGAAGAAGAGGTAGCTAAAACTACTGATTGTGATCTTTGATACGGTTGCCTGTCGAAGTGTTTTCGGCTCCTTCATTTTGcacttggagggggggggggggggggatgtcgtGCAGAAGTGAAGCGGCTCGGGGGGGCACCCCTTGTCTACAACCACTTCGAGCCACTGTCCCATTCCAGCTTCACAACAAAGCACAACCGCGCTGCAAAGATTCCAAGACTGGCGACAGGAGCAAGTCTCGCCCCCCAAAGCCGACCATTCGTCGCACCCTGTCCCTGGATACAATTGTTGGACCATATCTGCAGGGCCGGTGGCCCAAGGAGGCAGAGAGCCAAGGAGTCACCTGTGTCAATGACAAGGCCACACAGACTCCCAGCTCCTGGGCAGAGGAGACTCGGGGAAGAAGAAGTGTTGGCGGACACAAACGCTCAGCATCATGGGGCAGCGCTGAACACTTGAGGGATGTGGTTAAGCTCAAGCACCAGCTGCAGAAGCGCTCCCGACACGCCCCTCCCTCTGGGGGATATGAGCGTCCCCACCACCCCCTACCTGGAGGCCATGTGCCAGGCGCTACACAGACGGTGCCCCTGAGCAGGTTGGCCCCTCGGCTGCGGCGCAGTGTGGAAGGTCTGAATCTGGAGCTGGAGGGGGTCTTTGTGTCAGAGACACCTGAGGACCAGCACAAGATCCTGGATGTCCCAGATGGCCACAGAGCCCCAGTTCCTGCCCAGAGGTGCAGCAGTGGTACCCAGAGTGAACCCTCCCCTGCCTCGTTCGACCCTGCTTTGCTCTCTCCATCTGAGTCTCCCTGTTCCCTGAACCCAGCTCTACTCTCCCCATCTCAGTCTCCCTGCCCCATGGGAGAGCCAGACCCTGTGGACTGTGAGACTGTGTGCCCCTCTCCAGTAGTTTTGGACCCCTCCCTGTTGCAGCCCTCCTCCCCTCGTCCCAACAAGACCTACTCCTTCCAGAGGGAGCCCCCTGAAGGCTGTGAGCGAGTACGCGTAGTGTGTGAAGAGGCTATGTATCCCTGTCAGAGAGAGCCTCTCCTCCAGGTATCCTGCCCTGACCCCAACAAGGTGAATTTCACTCCCCATGGAGGCTCTGCCTTCTGCCCTGTCAGTCTGCTCAAGCCCTTGCTGCCCTCCATGGACCTCCTGTTCCGCGGCCTGTCAGTCTCGCCTGTCACAGGCTGCTCAGGTCAAGGCTCTGCCCCCTACCAGACAGTTGGGCATTTGGTTGGGGGCTACATGAGTGGACCCCTCCAGGACACAACCACCATGTGACTGTGGAGATGGGGTTGTTTTCAGACTAATGAGGATGGATTTATCCTAATAGATTAAATCAAGATGGCTGCCACCACCTTGTCAGAGACTGTTATGACAAGCCTCCAGATCTATTCAACTAAGATCAACAAAAAGAGACCTCTACAGTGGGTCCTCTGTGGGATCAGGATCAAATCTGTCATTGGTGTTCTATCCTGATTCTCAGAGGGACTTGCTGCTCTGGGTACATTGATAGTCACTTGCCCCCTTGGTTAGGGGGGTAAATAAATTGTACAAATGTTTGTGTGACATATTTTCATTCTACACAACTTGGCCTTGCTCTGATACCCTTAGATTTGTTATAGCTAGAGTGTGGAGTCAGAGATGTACTAATTAGTGATGCCCGGGTCCCCGCGGTTATATCTGTGGGGTGGATGGTTTTAGagtcattaaatattgtgtggcGGGTGGCAGGctggttgaataaagagaaataATACCTtttaaaaaatc
>XM_021558474.2
ACTGTCCCTCCGTGACACATTTAGCCACGATTTCTGACCACGGCTCCACCAGATAGGGCGTAAGATGGCGTCAAGGTTTTTTGTCATTTATAGCCCGGGACCGACTCTGTTACACTACTGTGCGTCATGACATCAGTGTGGAACTCTGTGAGAGGACTGAGAGCTCTAGGAGACTAGACCCAGAGAGAAGACTGCATTTTGGGGAAACGTGACCTGGAGAGGAACCTGCATTTGGAGGAGAGGAGGCCCAGAGAAAATAGCTAAGTTAGGGGGAGGCAGAACAGGAAAAAATAAATTGATGTTGAGGTGAAATTGGCCATCAGCAAGAGGATCCTGTCCAGGCTGTGTGTGAATCAGGAGTGTGGAGACGAGGGAGGGCAGCTCAGCAGATAGACCGCCACACACCCACATCCTCCCGTCTGCCAGCAACGCTCACCCCAGGGCTTGTGGGCATTAGAGGAGTGGGGCCTATGTCGACTCCCAGCTCCTGGGCAGAGGAGACTCGGGGAAGAAGAAGTGTTGGCGGACACAAACGCTCAGCATCATGGGGCAGCGCTGAACACTTGAGGGATGTGGTTAAGCTCAAGCACCAGCTGCAGAAGCGCTCCCGACACGCCCCTCCCTCTGGGGGATATGAGCGTCCCCACCACCCCCTACCTGGAGGCCATGTGCCAGGCGCTACACAGACGGTGCCCCTGAGCAGGTTGGCCCCTCGGCTGCGGCGCAGTGTGGAAGGTCTGAATCTGGAGCTGGAGGGGGTCTTTGTGTCAGAGACACCTGAGGACCAGCACAAGATCCTGGATGTCCCAGATGGCCACAGAGCCCCAGTTCCTGCCCAGAGGTGCAGCAGTGGTACCCAGAGTGAACCCTCCCCTGCCTCGTTCGACCCTGCTTTGCTCTCTCCATCTGAGTCTCCCTGTTCCCTGAACCCAGCTCTACTCTCCCCATCTCAGTCTCCCTGCCCCATGGGAGAGCCAGACCCTGTGGACTGTGAGACTGTGTGCCCCTCTCCAGTAGTTTTGGACCCCTCCCTGTTGCAGCCCTCCTCCCCTCGTCCCAACAAGACCTACTCCTTCCAGAGGGAGCCCCCTGAAGGCTGTGAGCGAGTACGCGTAGTGTGTGAAGAGGCTATGTATCCCTGTCAGAGAGAGCCTCTCCTCCAGGTATCCTGCCCTGACCCCAACAAGGTGAATTTCACTCCCCATGGAGGCTCTGCCTTCTGCCCTGTCAGTCTGCTCAAGCCCTTGCTGCCCTCCATGGACCTCCTGTTCCGCGGCCTGTCAGTCTCGCCTGTCACAGGCTGCTCAGGTCAAGGCTCTGCCCCCTACCAGACAGTTGGGCATTTGGTTGGGGGCTACATGAGTGGACCCCTCCAGGACACAACCACCATGTGACTGTGGAGATGGGGTTGTTTTCAGACTAATGAGGATGGATTTATCCTAATAGATTAAATCAAGATGGCTGCCACCACCTTGTCAGAGACTGTTATGACAAGCCTCCAGATCTATTCAACTAAGATCAACAAAAAGAGACCTCTACAGTGGGTCCTCTGTGGGATCAGGATCAAATCTGTCATTGGTGTTCTATCCTGATTCTCAGAGGGACTTGCTGCTCTGGGTACATTGATAGTCACTTGCCCCCTTGGTTAGGGGGGTAAATAAATTGTACAAATGTTTGTGTGACATATTTTCATTCTACACAACTTGGCCTTGCTCTGATACCCTTAGATTTGTTATAGCTAGAGTGTGGAGTCAGAGATGTACTAATTAGTGATGCCCGGGTCCCCGCGGTTATATCTGTGGGGTGGATGGTTTTAGagtcattaaatattgtgtggcGGGTGGCAGGctggttgaataaagagaaataATACCTtttaaaaaatc

Function

NR:

description
protein FAM117A-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941403.1 False 1985 mRNA 0.51 7 49558788 49567825
XM_021558473.2 False 2098 mRNA 0.52 8 49558789 49567825
XM_021558474.2 True 1886 mRNA 0.54 7 49564193 49567825

Neighbor

gene id symbol gene type direction distance location
LOC110486691 LOC106601608 coding upstream 1611 49551722 ~ 49557177 (+)
LOC110486693 rundc3a coding upstream 7285 49533020 ~ 49551503 (+)
LOC110486690 LOC106606872 coding upstream 28055 49522530 ~ 49530733 (+)
LOC110486684 LOC106601519 coding upstream 174266 49370238 ~ 49384522 (+)
LOC100136718 mlc-2 coding upstream 259537 49295336 ~ 49299251 (+)
LOC110486696 LOC106601597 coding downstream 3683 49571508 ~ 49577269 (+)
ndua4 ndua4 coding downstream 12499 49580324 ~ 49584562 (+)
LOC110486697 spop coding downstream 39654 49607479 ~ 49713614 (+)
LOC118938084 NA coding downstream 231562 49799387 ~ 49799839 (+)
LOC110486702 mien1 coding downstream 501067 50068892 ~ 50125626 (+)
G1182795 NA non-coding upstream 49878 49508693 ~ 49508910 (+)
G1182784 NA non-coding upstream 89979 49467765 ~ 49468809 (+)
G1182773 NA non-coding upstream 91707 49466691 ~ 49467081 (+)
G1182772 NA non-coding upstream 92579 49465715 ~ 49466209 (+)
G1182771 NA non-coding upstream 93132 49464439 ~ 49465656 (+)
G1182809 NA non-coding downstream 538 49568363 ~ 49568629 (+)
G1183727 NA non-coding downstream 147301 49715126 ~ 49715459 (+)
G1183729 NA non-coding downstream 164521 49732346 ~ 49732859 (+)
G1183730 NA non-coding downstream 165554 49733379 ~ 49733590 (+)
G1183737 NA non-coding downstream 168439 49736264 ~ 49736493 (+)
G1182742 NA other upstream 132565 49419570 ~ 49426223 (+)
LOC110486677 LOC106601591 other upstream 275285 49281106 ~ 49284116 (+)
LOC110486678 NA other upstream 292017 49263529 ~ 49266771 (+)
LOC110486671 LOC100335037 other upstream 356098 49198846 ~ 49202693 (+)
G1182629 NA other upstream 440091 49114975 ~ 49118697 (+)
G1183819 NA other downstream 264396 49832221 ~ 49835014 (+)
G1183875 NA other downstream 314996 49882821 ~ 49883435 (+)
G1184435 LOC106606845 other downstream 1417988 50985813 ~ 50986566 (+)
LOC110487554 LOC106601638 other downstream 1816347 51384172 ~ 51394113 (+)

Expression


Co-expression Network