LOC110486697 (spop)


Basic Information

Item Value
gene id LOC110486697
gene name spop
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 49607479 ~ 49713614 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558476.2
AAAATAACAAAGCATGGCAATGTTTTGGTATGGGCGTGCATACTTTCGTCACAGGCATAACCCGGATGTAGAGTGCCAgtgctgacaacaaaaaaatcctaTCCTGTCGTGGAACAGACTGAAAAAAGCCGGACAGGAGGCCCAGGCAAACAGAGGGACACAGCCagagacgcagacagacagacttacagATAGAGGACTGCtcccagactgacagacagagggcCCAGCTGGCCCAGCCATGGCATCAGCCAGGAGCACAGATGTTTGAGGGACTTTGATCTGGGGTGTTGCTGTGGATTACCTGGACGTTCCCCAGACGTTATCCTTGGCTGGACCTTGGTGCTGTGTGTGGTGGTCTGGTGGAATACTTAGCCCATTCAGTGGTGTTGTTGGGCTCAGCCACCCCTCCActctgccttcctcctggctggTGCTCAGGCTCCACTCAGGCCCCCCCTGTCTCAACGCTGGCGATGTCAAGAGTCCCGAGTCCCCCTCCCCCCGCGGACATGTCCAGCGGCCCTGTGGCTGAGAGCTGGTGTTACACTCAGATCAAAGTGGTGAAGTTCTCTTACATGTGGACCATCAACAACTTCAGCTTCTGTCGTGAGGAGATGGGCGAGGTCATcaagagctccaccttctcttcGGGAGCCAATGACAAGCTTAAATGGTGTTTGCGTGTAAACCCTAAAGGCCTGGACGAGGAGAGTAAAGACTACCTGTCCCTCTACCTGCTCCTGGTCAGCTGTCCCAAGAGCGAGGTGCGTGCCAAGTTCAAGTTCTCCATCCTCAATGCCAAGGGAGAGGAGACGAAGGCTATGGAGAGCCAGAGGGCATACCGGTTTGTCCAGGGGAAGGACTGGGGCTTTAAGAAGTTCATCAGGAGAGACTTCCTGCTGGACGAGGCCAATGGGCTGCTGCCTGACGACAAGCTCACTCTCTTCTGTGAGGTGAGTGTGGTGCAGGACTCTGTGAACATCTCAGGTCAGAACACTATGAACATGGTGAAGGTGCCAGACTGCAGGCTGGCCGATGAGCTGGGAGGGCTTTGGGAACACTCCCGCTTCACTGACTGCTCCCTGTGTGTGGCGGGACAGGAGTTCCAGGCACACAAAGCCATCCTGGCAGcCCGATCGCCAGTGTTCAGTGCCATGTTTGAGcatgagatggaggagagtaAAAAGaaCCGTGTGGAGATTAACGATGTGGAGCCCGAGGTGTTCAAGGAGATGATGTGCTTCATCTACACGGGCAAAGCCCCCAACCTGGACAAGATGGCTGACGACCTGCTGGCTGCGGCTGACAAGTATGCTCTGGAGAGGCTGAAGGTGATGTGTGAGGATGCTCTGTGCACCAGTCTGTCTGTGGAGAACACTGCAGAGATCCTCATCCTGGCAGACCTGCACAGTGCAGACCAACTCAAAACACAGGCTGTGGACTTCATCAACTACCATGCTGCTGAGGTGATGGAGACGTCTGGCTGGAAGTCCATGGTGGCATCCCACCCCCACCTGGTGGCTGAGGCCTATCGCTCCCTGGCCTCGGCCCAGTGCCCCTTCCTGGGACCCCCACGCAAACGCCTCAAACAGTCCTAGTGTCCCTGGATCCCTTGCCCAGCTCTGCTCTACCCTGGGACCACAGAGGggtctgctctcctcctcctccaggcccCCTCCAGAACCTAGAGATGCCCAGATTGATACCAgagctcctccctccctcctccctcagctGAAAATACAGGGGGGATGATGTGGATTTGGTACAAAGACGATGAAAAAAAGGGATGATCCACCCTGATAACTGAATATAGACAGTGACTACCTTGTCTTACCCTGTACACCTGTAGAGAACAGAGTGTTTGGGTATAGGAGGGAGGTAGAAGTtgtaaatgcattttttttttactttacttttttttaaagtcctCCTTGTAGCATTGTGTAAAAGCCCAAGCTTTATGTATGAAatcagaaaaacaaacaaaaaagacaATAACCAAAAATGGACAAAGAGAAAGTTTTGGGTGATGAAGTGCCACCATGTCCCAGTCATCTTCCCTGAGCAGAGAAAAACCCTGTAGTTCATGTTTGACATCCATCTTgtacaaaataacattttaagcATTTTTCTCACCGAAGGGCAAAAAGAAAGGTGATTTTTTTGCAAGAAACAAGATGGAGATGAACACGTTTTAATGTTCAACATGTCCAACCTTTTTCTCTTAGAAAAACGACATACAAAAACATATTATATCAACTGTTTTTACTCTGACCCTTTTCAGGACTACTTTCCTCATTGGTGGAATTAGAAGGCACTCCTGCGTCACTGTCAAAACGCTAACAAATGTTTAGTCTCAACACAAAATACAGCTATTTTGGATTGTAAAA

Function

symbol description
spop Predicted to enable ubiquitin protein ligase binding activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process and regulation of proteolysis. Predicted to be located in nuclear speck. Predicted to be part of Cul3-RING ubiquitin ligase complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human SPOP (speckle type BTB/POZ protein).

NR:

description
speckle-type POZ protein

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0016607 nuclear speck cellular_component
GO:0031463 Cul3-RING ubiquitin ligase complex cellular_component

KEGG:

id description
K10523 SPOP; speckle-type POZ protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558476.2 True 2396 mRNA 0.51 11 49607479 49713614

Neighbor

gene id symbol gene type direction distance location
ndua4 ndua4 coding upstream 22926 49580324 ~ 49584562 (+)
LOC110486696 LOC106601597 coding upstream 30210 49571508 ~ 49577269 (+)
LOC110486695 LOC106601598 coding upstream 39654 49558788 ~ 49567825 (+)
LOC110486691 LOC106601608 coding upstream 50302 49551722 ~ 49557177 (+)
LOC110486693 rundc3a coding upstream 55976 49533020 ~ 49551503 (+)
LOC118938084 NA coding downstream 85773 49799387 ~ 49799839 (+)
LOC110486702 mien1 coding downstream 355278 50068892 ~ 50125626 (+)
LOC110486703 NA coding downstream 359991 50073605 ~ 50076256 (+)
LOC100136769 LOC100136769 coding downstream 365667 50079281 ~ 50090662 (+)
LOC110486704 ubtf coding downstream 377723 50091337 ~ 50113963 (+)
G1182809 NA non-coding upstream 38850 49568363 ~ 49568629 (+)
G1182795 NA non-coding upstream 98569 49508693 ~ 49508910 (+)
G1182784 NA non-coding upstream 138670 49467765 ~ 49468809 (+)
G1182773 NA non-coding upstream 140398 49466691 ~ 49467081 (+)
G1182772 NA non-coding upstream 141270 49465715 ~ 49466209 (+)
G1183727 NA non-coding downstream 1512 49715126 ~ 49715459 (+)
G1183729 NA non-coding downstream 18732 49732346 ~ 49732859 (+)
G1183730 NA non-coding downstream 19765 49733379 ~ 49733590 (+)
G1183737 NA non-coding downstream 22650 49736264 ~ 49736493 (+)
G1183740 NA non-coding downstream 23773 49737387 ~ 49737651 (+)
G1182742 NA other upstream 181256 49419570 ~ 49426223 (+)
LOC110486677 LOC106601591 other upstream 323976 49281106 ~ 49284116 (+)
LOC110486678 NA other upstream 340708 49263529 ~ 49266771 (+)
LOC110486671 LOC100335037 other upstream 404789 49198846 ~ 49202693 (+)
G1183819 NA other downstream 118607 49832221 ~ 49835014 (+)
G1183875 NA other downstream 169207 49882821 ~ 49883435 (+)
G1184435 LOC106606845 other downstream 1272199 50985813 ~ 50986566 (+)
LOC110487554 LOC106601638 other downstream 1670558 51384172 ~ 51394113 (+)
G1185436 NA other downstream 1732293 51445907 ~ 51446557 (+)

Expression


Co-expression Network