LOC110486699 (LOC106601618)


Basic Information

Item Value
gene id LOC110486699
gene name LOC106601618
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 49970722 ~ 50040333 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558479.2
TCGCGGCCCGAGTGCCGAATTTGTACCGcaggtgttttttttgttgcattttcattgttggacataaaacaaTGTAAATCAGCTCCAAGTTATTTTAATTTGGAATATCTGTTCCCAAGTATGTCCATGCATAATATAGAGACGCATTACCATATAcaaatgcaagcaaggtttggaattattatgttttagtcaaatattatatctgtttgggcttgattgcggtctacaaattatttgtcatTATGTTCTTGCCCCCCAACCATCTACTCAAGAAAAGAATGACGCGcgtctgaatctagttgatgatcccagGTGTAGATCGAGCAAGTCGACTACTGCAGAAGTCACAGGGTAAATCGGGAAGGAGTGGACGTGCCTCTCTTCAGTTCGTGCACGACTCTTGCCTCCGCAGTGCACTGCTGGATAGCGCTCAGTACAGTCAGTCTGCGCCCGGACGCTTCACGCACGCACCAGTGACCTGCCAATGCGACGCATCTCACTCTCAAAAGGTCTCGAACACTACACCGCAGCGAAGAGCATGGGGAATTCACTGCGGACTCATTGATAAAGAATTGCCACTGGAATTAAAATGAACAATTCGTCCTGTATGTTCCTTTGCAGTATCCATTTAGTATAGTCTATTTGTTTATGACACTGTAGGAAACCGAAGCATGGCGGGTGCCTTATCATTGGTGATGTTGTTTGGAGTGGTTGGGGTGTTGGTGGCTTCTAAGACGGAGCGGGCGGTGCAGGTGCCCTGTGACTCAGGCCAGTACACCAAGGGTGGAGAGTGCTGCGAGGTGTGCCCACCCGGAGAGGGGGTGGTGAGAAGGTGTGGTGCCAACCAGACCGTCTGCGCCCAGTGCCTAGACAGTGAGACCTACTCAGAGACCTACAGCCACATAGACACCTGTATCCCCTGCACCATGTGTACAGGTCTGATGCGCATGCAGACACCCTGCACCGACTCCAACAATgccatctgtgtgtgtgactacaaCTACTACCTGAATGAGGTGTCTGGGCGCTGTGAGCCCTGCACGGTGTGCCCGGCGGGCCAGGGCGTGTTGGCACACTGCGAGCACAACCACGACACGGTGTGTGAGGAGTGTATAGACGACACCTACTCTGACCGGGACAGCTCCCtggacccctgcctgccctgcacCATATGTGATGAGGGCATTGAGGTGGAGCTGAGCGCCTGCACCCCCGTCAGCGACTCCCTCTGCCATAATCCTCTCCTCCCGTCCTACACTTCTCCCACCTTTCCCCTGgacctgtcttccccctctttcACAGACATCTTCCCACCAGACAGCTCCAGCAGCCCTTCCCCGGGGGGAGAGAGCACCACGGCCCAGCCCAGCCCTCACTTCATCAGACCGGGCTTCAACGAGAACCTCATCCCCATCTACTGCTCCATCctggctgctgtggtggtggggctgGTGGCCTACATCATCTTCAAAAGGTGGAACAGCTGCAAGCAGAACAAACAGCCGGCTAACAACCACCAAGCCACAGCAGCCAATCAAACGGTGACGCCGGAGGGGGAGAAGCTGCACAGCGACAGCGGTATCTCAGTGGACAGCCAGAgtctgcaggagcagcagcatgCAGCCCAGgtccagacacagacacacagacaggaacaaatAGtggtgAGGGTGGATGGGGGACCTGACTCACCTCCCCCCCAGgtctgaggaagaggagaagccgctgacaggaaggaggaaaaggaggagagggggaagtgggGTTGCCATGGAAACCTTGATGTGGGAATGGACATACAGTATAAGAGTACAGACTGAGTGGGCTTCTTGGATACAACAAGGAAGTTGACGACATTATCGTCCCTTTTCACCGAGTGTGGCCACTGGTTTCTGACTGGCCTCTTGTCCCAGTATGGACCCTTATTGGACAGACTGGAGCATCAGAGGCTGACTCAGTATCTCTACACAGAACCCAACTCTGCCAGTGTGTCTTTGAACACTAAACCTCTCCGCCAGTACCAACCCTAACACCAACGCCAAACACCAACCCTAACACCAACGCCAAACACCAACCCTAACACCAACGCCAAACACCAACCCTAACACCAACGCCAAATACCAACGCCAAACACCAACCCTAACACCaacccaaacccaaaccctaacACCAACCCTAACACCAACCCTAACACCAATTGTCTGCCTCAAGTCACTAAAGTTGCAATATCACTACCACCCATAATCCAAGAAGCATCACTGCGTTAGATATCCTGGTCTTTTCTGTCAGCTGGTGTTGACCAATCATTATGAAAAGTGTGTTAGTATGTTATCCCATGAAGGAGTTTCATCCTGTGTCCCAATAAGTTCACTGCCAACTTCCTTTGACCATTTGCTAAAATTATTATTCATCCACCCCCCAATTCCCCCCTACTCACTCACATTATCAAATGTTTGTGCCTCAGAGGTAGATaaactctctttcccctctctccccttgtctgtactctctctctctcagcgtgTAACTATCTgtccctctttccatccctccatctgtaCCTATCCTATCCTAGTGTGTTCTCGGGGCAAGTCTTGCAGTAGTCTCTCAGTGACTCCGTCACACCTCCAGACTGTCTTCTCAGACCTCAGCAGTAGCAGCTTGTTGTAATCCTCCATGTGAACCTGTCTGATAGTATCCAACTGTTATCTATTCAACACAACTCAGTGGGGGTACAGTTACGCTGCGTTTAGATTGTACGAGGTAGACGGCGTCCGGATGTCATTGTTTTCAATGAGAGCACGACGGTAAATGCCGTTGAGGTCACAGTAGACGGGACATGCCACCAGAGTTAAAATATAAAAACTTTTGTTGTCTGTCGTAGCGTTCTTTTCTACCGGATGTTGATTTGCACTGTTTGTTTACCAAAATCACCACAGCAACCATACCGTCGTGCTGGCTTGCTTTCTTCTTGTATGATGGTTTCTGCGTCCCTCGTCTAAATGCAGCATTAGTCGCCCATTCCAAAATATCCTATCCTTTTTCTttaccacagacacagacattccTAAGGTGTACAGGGACGGACACATTTGTGTTGTTGTTATACTGTTTCTCTGATTACTGCTCTCCTATTCTCATTGGCTGTGGATCATTCCATCATTCTGTCACCACAACATGATACACCATCCCTCCTCTGTTTTCTGACACACTTGACTCCTTTTCTCCATCCAACATGGACTCCAGGATTCTGTTGGAATGATTCATGCTTTGAATTTAACAGATTCTAGATGTTTCTCTCATGTCTGTTTGTGGCGCATCCGCCTCTCTTAGTGGTTTGAGTTACAAGGCCTCCTCAGCAGTGCAGCTCCATTACCCCAGGAGCTGTGATATGCAATGTGAGGAGCATTTTTGGACTATTTAACATTCCTGACTCATTGACCTGACGCATAATGTGATGTCCAACTGCCAAAAATGGAACTGTAACATCATCAGAAAGAGGCTCTGCAGTATCAGTATTCGAGGCTGTTCCATGGTAGCCTGACGAGAGTTGTCTAGAAATAGtatacagtttatatacaaaCACTGTATAGTAGGCTATACTCAAGACTCCCCTTAATTATCCATTATATTGTACTTGCTAATGAGTGGAGACATGGGACACTCATCAGAGACTTCCGTCTCACTGAAATAAACACaagcacttgcacacacacactcacgtgcaGATATGTGTGTGTGCTAAAGAGTGTGCGGTGGCGCTAATGTGTCTGCTGCGGTATAGTATGGTAGGGGCATGGGTGTAAACACAGGGGCCATTAGGGCGACATTCCTGACAGGCAGGTATAATTACCTCAGGATTTCAGGTTCATTTAGCTTCACTCAGTCAGCTGGCTCTCATCTGAATCCCTCTGTTATGTACTgcacagagacatacagaacGCTTTTAAAGTGGCAACAATGTGACATTACCATTACTCACCTCTCATGTGTCTGAGAGAGCAGTGAcattttactgtatcacaataGTGATCTGAAGCATACGCAGCATACTGAACACGCAGTAGGTATTAGATGTTAGCAATGTAGCTACGCTTACTGTAACTGTACTGCTTTGAAGTCCAGGTTTGATTCCCAGGGACATGTGATTACTCAGGGTCCCTTTGGTGTGGTTTGATGCTTAAATTTAGATGTAGGTAGATAGCAAAGTAGAGATATTAGCAGagatacttttgtgtgtgtgtgagagagagagagacacagagagagagagagagagagagagagagagagagataatctgGCGTAGCAAAGATACAGTAGGGAAGACGCTCTCATAGTAGTGAGTTTTGAGGCTTTTGAATAGAAAACAGACCAACACACCCACACTATATTCCCCCTGGGGGCCTCCTTGTGACATATCCAGTGGcttcacacacacagtgtttcacACAATATTATTGACAGCAGTGTGATTCATGTTGCTCCACAATGGAAGTGCAGTAGGACCCAGTGGACCAACAGATTGGCATAATACCACTGACTGACAGGAGGGACTGTCATCAACGACTAGTGAACAACTGAACCTTTCACTGTGGCTGGTGGCCCCACGGGCCCAATCTAACACTGTGCTGTCTCACAGGTGAATAGAGGTGTCAATATAGAATCTACAGTATGACTCAATCTGTACTGTTCCTCCACAGCAGGGGACACTGGTAGAGTGGAGGAAGATAATATAAGAATGTAAAGCTGAATAACGTTACAGACATAAATATGCAAAACATTCAATGTTCTTCTATTGTTTTTGTTATGAATATTATTGTCTTTTTTGAAATCAGTATTTTTTTGTAAACGGTTTCTTGTTTTAGCACTTATTAGATGTAATAGGCACACTCAAAGACTGTGCTATACAAGTGCCTGTGTACAGAGTCAGGTGTGTTTGAGTTATGTTCAGAACACTTTCTGTTGTTCTTCTTCTTCCGTTTTTATTCTCACTTGTTGTATGATCTGTGTTTTGTTTCATCATTTGAGTGTTAATGAAGGTTTCAGGAAGTATAGGCCATAGGTTAAAACGTACTACTAATGTTGTTGAAATCCATATAGCATCACCTACGTACATGCCATCTGCTGTGGTTCTATTTTACAGACCATAATATACTCTACCTACAGTGCAAAAGTGGCAATATGTGATGAGCATGACCAGTATGTTTTTACATGTTCAGTTTGTCCAGAGGCTGTGGACAGACATGCCATGTATGAGGAGGATTCACTGTGATTCTCTATGGTAATATCCAAGATATAATAAATCCCCACAGACATTTCAGACCCCTCCCCCCCCAAAAGCTGAATGTTACATGTACTTACCTATTAGTGTAAAATGcattgtgtaaatgtgaatttcTTAGAGTTGTTACAATATATAAATACACTATAAAATTGAAAAAGCAAACAAATTAATTATCTGATAgaataaaaacaaatgtaattGCA

Function

NR:

description
tumor necrosis factor receptor superfamily member 16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558479.2 True 5493 mRNA 0.46 6 49970722 50040333

Neighbor

gene id symbol gene type direction distance location
LOC110486698 LOC106601594 coding downstream 117051 49831067 ~ 49853671 (-)
LOC118938314 NA coding downstream 428973 49537199 ~ 49544276 (-)
LOC110486692 LOC106606873 coding downstream 437132 49530771 ~ 49533590 (-)
LOC110486688 LOC106601605 coding downstream 448200 49515050 ~ 49522522 (-)
LOC110486687 LOC106601611 coding downstream 465903 49486817 ~ 49504819 (-)
si:ch211-214j24.15 LOC106606868 coding upstream 18701 50059034 ~ 50067398 (-)
LOC110486710 LOC106601657 coding upstream 82857 50123190 ~ 50127201 (-)
LOC110486707 asb16 coding upstream 87222 50127555 ~ 50130302 (-)
LOC110486713 NA coding upstream 590672 50631005 ~ 50633690 (-)
LOC110486716 LOC106601616 coding upstream 607101 50647434 ~ 50653284 (-)
G1184598 NA non-coding downstream 44278 49926199 ~ 49926444 (-)
G1184592 NA non-coding downstream 55191 49912632 ~ 49915531 (-)
G1183882 NA non-coding downstream 81098 49889328 ~ 49889624 (-)
G1183844 NA non-coding downstream 118520 49852000 ~ 49852202 (-)
G1183842 NA non-coding downstream 120818 49849669 ~ 49849904 (-)
G1184656 NA non-coding upstream 2455 50042788 ~ 50043118 (-)
G1184661 NA non-coding upstream 8453 50048786 ~ 50065188 (-)
G1184673 NA non-coding upstream 13260 50053593 ~ 50056236 (-)
G1184667 NA non-coding upstream 24633 50064966 ~ 50135362 (-)
G1184668 LOC100136769 non-coding upstream 38810 50079143 ~ 50084716 (-)
G1183706 NA other downstream 282266 49685338 ~ 49688456 (-)
setd1a LOC106585476 other downstream 613508 49346540 ~ 49361234 (-)
G1184986 NA other upstream 586314 50626647 ~ 50628539 (-)
LOC110485208 LOC106606837 other upstream 716305 50732097 ~ 50824433 (-)
G1185046 NA other upstream 739932 50780265 ~ 50781858 (-)
G1186080 NA other upstream 1281467 51321800 ~ 51323931 (-)
G1186075 NA other upstream 1311976 51352309 ~ 51373954 (-)

Expression


Co-expression Network