LOC100136769 (LOC100136769)


Basic Information

Item Value
gene id LOC100136769
gene name LOC100136769
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 50079281 ~ 50090662 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124717.2
ACTCTATCATTGGGTACGTTTACGTTAGCATCGTGGCGATCAACCTATTTCTACTGCCACAGACTAGGCTGGATCACCTTGGTGCAGGGTATGCACAAACGTTGCTGAAAGTTTAAGGACAGACGAAGCAAGCACTGACACACTCCAATGGAGAACGACCTGTCTTTTGGAGAGGATGTCATGTCCTATGAGGAGGAGAGTGACTCTGCTTTCCCATCTCCGATCAGACCgacCCCACCGGGCCACAGTGGCAACTATGACCTGGAGCAGAGCAGGCAGGAAGAGGACAGCAACCAGGCCATCCAGAGCATCGTCGTTCACACCGACCCAGAGGCCTATCTGAACCTGAACACCAACGCCAACACCAGAGGGGATGCTCAGgccTATGTAGAGCTGAATGAGCTCATGGGCAACAGCTGGCAGGAGACTGGCCGCTGGGTGGGCTATGAGGAGAATTTTAACCCAGCAACGGGCAAGTGGGGCCCCTCCCACGTCTCCTACCTCACCTTCAAGAGTCTGATCCAGCTTCGCAAGATCATGAGCACAGgTGCGATCATTCTGGACCTGCAAGCCAGCAGTCTGTCTGCTGTGGCTGAGAAGGTGGTGGATGAATTGCGGAGCAAGGGTGAGATCCGTGCCGCTGATAGAGATGGCCTGCTGAGGGCTCTACTGCAGAGACGCAGTCAGTCTGAGGGAGCTGTAGCTCAACCCCTGGGAGGAGACATCGAGATGCAGACCTTCTCTGTCACCAAGCAGAGAGATACAACTGATAGTGTGGAAGCCTCCATTGTCCTCTCAGgGGTGATGGACTCCCTGGAGAAGCCTGCCGTGGCCTTCGTCAGGCTGGGGGACTCTGTGGTGATAGAGGGGGCCCTGGAGGCCCCTGTGCCGGTGCGCTTCGTCTTTGTGCTGGTGGGCCCCAGCCAGGGAGGAGTGGATTACCATGAGAGTGGCCGTGCCATGGCTGCCCTTATGGCTGATTGGGTCTTTAGTCTGGAGGCTTACCTAGCCCCGACTAACAAGGAATTGACCAATGCCATCGCTGATTTTATGGACTGCAGCATCGTCATCCCGCCCACTGAGATCCAGGACGAGGGCATGCTCCAGCCAATCATTGACTTCCAGAAGAAAATGCTGAAGGACAGACTCCGCCCCTCTGACACCCGAATCATATTTGGTGGCGGGGCCAAAGCTGATGAGGCCGATGAGGAGCCAAGAGAAGACCCGCTGGCCCGGACAGGCATTCCCTTCGGCGGGATGATAAAGGACATGAAGCGGCGGTACCGCCATTACATCAGTGACTTCACAGACGCCCTCGACCCCCAGGTCCTGGCTGCTGTCATCTTCATCTACTTCGCTGCCCTGTCCCCTGCCATCACCTTCGGAGGCCTGCTGGCCGATAAGACGGAGCACATGATGGGCGTGTCTGAGCTGATGATCTCCACCTGCATCCAGGGCATCATCTTCGCCTTCATCGCAGCCCAGCCTACACTGGTCATTGGCTTCTCTGGGCCACTGCTGGTGTTTGAGGAGGCCTTCTTTGCGTTCTGCAAGTCCCAGGAGATTGAGTACATTGTGGGCCGTATCTGGGTAGGCCTGTGGCTGGTGATCATCGTGGTGGTTATCGTGGCTGTGGAGGGCAGCTTCCTGGTCAAATTCATCTCCCGCTTCACGCAGGAGATCTTCTCCATCCTCATCTCCCTCATCTTCATCTACGAGACCTTCAGCAAGCTCGGCAAGATCTTCAAAGCTCACCCTCTGGTTCTGAATTATGAGCACTTGAACGACAGCCTGGACAACCCTTTCCACCCGGTGGTCAAGGAGCACATAGAGTATCATGAGGATGGCAACAAGACAGTGCACGAGGTCATACATGAGAGGGCCTACCCCAACACCGCCCTGCTTTCCATGTGTCTTATGTTCGGGTGTTTCTTCATCGCATACTTCCTCCGTCAGTTCAAAAATGGCCACTTCCTCCCTGGACCGATTCGTCGGATGATTGGAGATTTTGGTGTTCCCATTGCCATTTTCTTCATGATCGCTGTGGATATCACCATTGAGGATGCCTACACTCAGAAACTTGTGGTGCCCAAGGGTCTTATGGTGTCCAACCCCAATGCCAGAGGCTGGTTCATCAACCCCCTGGGAGAGAAGAAGCCTTTCCCTGCCTGGATGATGGGGGCGTGTTGCGTGCCAGCCCTGCTGGTCTTCATCCTCATCTTCCTCGAGTCCCAGATCACTACGCTGATTGTGAGCAAACCAGAGAGGAAGATGGTGAAGGGCTCTGGTTTCCATCTGGACCTGCTCATCCTGGTCACCATGGGTGGCATCGCCTCCCTGTTTGGGGTGCCCTGGCTGAGTGCCGCCACCGTGCGTTCTGTCACCCATGCCAACGCCCTCACTGTCATGAGCAAGGGACCCAAGCCTGAGATCGAGAAGGTGCTGGAGCAAAGGATCAGCGGCATGCTTGTGGCCGCCATGGTCGGTGTGTCTATTCTCTTGGAGCCTATCCTGAAGATGATTCCCATGACGGCTCTGTTTGGAATCTTCCTCTACATGGGTATAACCTCACTCAGTGGGATCCAGATGTGGGACCGAATGCTTCTGCTTATTGTACCCAGGAAATACTATCCTGCTGACGCCTACGCACAAAGGGTAACTACTATGAAGATGCACTTGTTCACCCTGATCCAGATGGTGTGTTTAGGAGCTCTCTGGATGGTGAAGATGAGTGCCTTCTCCCTGGCTCTGCCCTTTGTCCTCATCCTCACCATCCCCCTGCGCATGGCCATCACTGGAACACTCTTCACTGACAAGGAAATGAAATGTCTGGATGCCTCTGACGGCAAGGTGAAGTTCGAAGAGGAGCCAGGAGAGGATATGTACGAGTCCCCGTTGCCATGAACACCTGGACACGACCTTTCACTTCTCAACTCGCTGCGAGGATCCAGTGAACTCAAACAATGCTTTAATAGAGTCTAACACATTTATTAGTATGTGCCATCAGAAATATTCTTTAGGAAAATGTATTTTTAGCCAACTGTCCTTAAACATCATTGCAATTGGGTATGTTTGTGTGCCAAGATAAAATGAAGGTCTCGGGTAAGCATTCAAACCTTTTTAATGACAGGTTGCCTAATATTCTACACTATTAATATGACAATTAACATTTGTCTCTCAAATACCCAAATAATGCCAAAAATATAATCCCGTCCGTATTAGGCAGATAGATAAATGCAATATtataaatcacacaaaaatgcTTTTCTATGGGACTGTTATTTTAGCCTTGGTTCTGTAGCCTATTTTATACCCTAGTTACATTACTCTCCTTTGTTACAGTTTGGTTTTATGCTTCATTGTGAGCTTATTGAATGAAAGTCTTATGTAGATCACTTTTTGTTCTTGCTGTTTTGTTTAGTTGCAAGCTAACGTGTGAGTATGGAGTTCAGATCATCTTAGTTCTATTTTGGGGTGTCCAGTGGTGTCACTCATTCAGTTCTTATACCTAAATACATATTTACTTCAGGATGTAATGCTTTCGGTATTGCAAAGGTGAGAGGGATACATATAGGAAAATGTATTAATCACTGAATGAATTGTAACAATATAATGATGATGTGGGAGAGAAATGTGTAAATATGACAAATGAATCACAGCAATAAGATTGACTATAGTAGGCCTATTGCACCATTTTTTCATTGATCGGGGACAGGTGTAAAAGGACAGCTGTATATTTGGTTTATTGTATGTTGATGTGTGTTTGAATCACTGTACAACTGCTGTTTTGATTGTCACCCAACCAATTAAAGACATTTTAAACCC
>TU1350253
AAGATGAGTGCCTTCTCCCTGGCTCTGCCCTTTGTCCTCATCCTCACCATCCCCCTGCGCATGGCCATCACTGGAACACTCTTCACTGACAAGGAAATGAAATGTCTGGATGCCTCTGACGGCAAGGTGAAGTTCGAAGAGGAGCCAGGAGAGGATATGTACGAGTCCCCGTTGCCATGAACACCTGGACACGACCTTTCACTTCTCAACTCGCTGCGAGGATCCAGTGAACTCAAACAATGCTTTAATAGAGTCTAACACATTTATTAGTATGTGCCATCAGAAATATTCTTTAGGAAAATGTATTTTTAGCCAACTGTCCTTAAACATCATTGCAATTGGGTATGTTTGTGTGCCAAGATAAAATGAAGGTCTCGGGTAAGCATTCAAACCTTTTTAATGACAGGTTGCCTAATATTCTACACTATTAATATGACAATTAACATTTGTCTCTCAAATACCCAAATAATGCCAAAAATATAATCCCGTCCGTATTAGGCAGATAGATAAATGCAATATtataaatcacacaaaaatgcTTTTCTATGGGACTGTTATTTTAGCCTTGGTTCTGTAGCCTATTTTATACCCTAGTTACATTACTCTCCTTTGTTACAGTTTGGTTTTATGCTTCATTGTGAGCTTATTGAATGAAAGTCTTATGTAGATCACTTTTTGTTCTTGCTGTTTTGTTTAGTTGCAAGCTAACGTGTGAGTATGGAGTTCAGATCATCTTAGTTCTATTTTGGGGTGTCCAGTGGTGTCACTCATTCAGTTCTTATACCTAAATACATATTTACTTCAGGATGTAATGCTTTCGGTATTGCAAAGGTGAGAGGGATACATATAGGAAAATGTATTAATCACTGAATGAATTGTAACAATATAATGATGATGTGGGAGAGAAATGTGTAAATATGACAAATGAATCACAGCAATAAGATTGACTATAGTAGGCCTATTGCACCATTTTTTCATTGATCGGGGACAGGTGTAAAAGGACAGCTGTATATTTGGTTTATTGTATGTTGATGTGTGTTTGAATCACTGTACAACTGCTGTTTTGATTGTCACCCAACCAATTAAAGACATTTTAAACCCTTTCAT

Function

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006820 anion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005452 inorganic anion exchanger activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124717.2 False 3825 mRNA 0.50 20 50079281 50090656
TU1350253 True 1107 lncRNA 0.38 2 50089178 50090662

Neighbor

gene id symbol gene type direction distance location
LOC110486703 NA coding upstream 3025 50073605 ~ 50076256 (+)
LOC110486702 mien1 coding upstream 7218 50068892 ~ 50125626 (+)
LOC118938084 NA coding upstream 279442 49799387 ~ 49799839 (+)
LOC110486697 spop coding upstream 365667 49607479 ~ 49713614 (+)
ndua4 ndua4 coding upstream 494728 49580324 ~ 49584562 (+)
LOC110486704 ubtf coding downstream 681 50091337 ~ 50113963 (+)
LOC110486708 LOC106606819 coding downstream 23712 50114368 ~ 50123426 (+)
LOC110486706 LOC106601646 coding downstream 39788 50130444 ~ 50135992 (+)
LOC110486711 asic2 coding downstream 61724 50152380 ~ 50600432 (+)
LOC110486712 LOC106600671 coding downstream 535064 50625720 ~ 50631000 (+)
G1183980 LOC106606868 non-coding upstream 14922 50063540 ~ 50064359 (+)
G1183973 NA non-coding upstream 35934 50043138 ~ 50043347 (+)
G1183972 NA non-coding upstream 36279 50042720 ~ 50043002 (+)
G1183890 NA non-coding upstream 104747 49970762 ~ 49974534 (+)
G1184046 NA non-coding downstream 128396 50219052 ~ 50220138 (+)
G1184078 NA non-coding downstream 176367 50267023 ~ 50267498 (+)
G1184178 NA non-coding downstream 327040 50417696 ~ 50418945 (+)
G1184296 NA non-coding downstream 510293 50600949 ~ 50601164 (+)
G1184298 NA non-coding downstream 512124 50602780 ~ 50603353 (+)
G1183875 NA other upstream 195846 49882821 ~ 49883435 (+)
G1183819 NA other upstream 244267 49832221 ~ 49835014 (+)
G1182742 NA other upstream 653058 49419570 ~ 49426223 (+)
LOC110486677 LOC106601591 other upstream 795778 49281106 ~ 49284116 (+)
G1184435 LOC106606845 other downstream 895157 50985813 ~ 50986566 (+)
LOC110487554 LOC106601638 other downstream 1293516 51384172 ~ 51394113 (+)
G1185436 NA other downstream 1355251 51445907 ~ 51446557 (+)
G1185521 NA other downstream 1537026 51627682 ~ 51628676 (+)
G1185527 NA other downstream 1560957 51651613 ~ 51653770 (+)

Expression


Co-expression Network