Item | Value |
---|---|
gene id | LOC110486708 |
gene name | LOC106606819 |
gene type | coding |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048577.1 |
NCBI id | CM023231.2 |
chromosome length | 73332040 |
location | 50114368 ~ 50123426 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
description |
---|
PREDICTED: ataxin-7-like protein 3 isoform X4 |
id | description |
---|---|
K11363 | SGF11; SAGA-associated factor 11 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_021558492.2 | False | 3357 | mRNA | 0.43 | 14 | 50114368 | 50123426 |
XM_021558495.2 | False | 3285 | mRNA | 0.43 | 13 | 50114368 | 50123426 |
XM_036941408.1 | False | 3412 | mRNA | 0.43 | 14 | 50114368 | 50123426 |
XR_005035582.1 | False | 3008 | mRNA | 0.44 | 15 | 50114368 | 50123426 |
XM_021558494.2 | False | 3317 | mRNA | 0.43 | 14 | 50114372 | 50123426 |
XM_021558497.2 | False | 1945 | mRNA | 0.43 | 9 | 50114387 | 50118379 |
XM_021558498.2 | False | 1994 | mRNA | 0.43 | 9 | 50114392 | 50118379 |
XM_036941409.1 | True | 1988 | mRNA | 0.43 | 9 | 50114392 | 50118379 |
50,102,000
50,104,000
50,106,000
50,108,000
50,110,000
50,112,000
50,114,000
50,116,000
50,118,000
50,120,000
50,122,000
50,124,000
NC_048577.1
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110486704 | ubtf | coding | upstream | 405 | 50091337 ~ 50113963 (+) |
LOC100136769 | LOC100136769 | coding | upstream | 23712 | 50079281 ~ 50090662 (+) |
LOC110486703 | NA | coding | upstream | 38112 | 50073605 ~ 50076256 (+) |
LOC110486702 | mien1 | coding | upstream | 42305 | 50068892 ~ 50125626 (+) |
LOC118938084 | NA | coding | upstream | 314529 | 49799387 ~ 49799839 (+) |
LOC110486706 | LOC106601646 | coding | downstream | 7018 | 50130444 ~ 50135992 (+) |
LOC110486711 | asic2 | coding | downstream | 28954 | 50152380 ~ 50600432 (+) |
LOC110486712 | LOC106600671 | coding | downstream | 502294 | 50625720 ~ 50631000 (+) |
LOC110486714 | LOC106601613 | coding | downstream | 515095 | 50638521 ~ 50641453 (+) |
LOC110486715 | LOC106601614 | coding | downstream | 521234 | 50644660 ~ 50647403 (+) |
G1183980 | LOC106606868 | non-coding | upstream | 50009 | 50063540 ~ 50064359 (+) |
G1183973 | NA | non-coding | upstream | 71021 | 50043138 ~ 50043347 (+) |
G1183972 | NA | non-coding | upstream | 71366 | 50042720 ~ 50043002 (+) |
G1184046 | NA | non-coding | downstream | 95626 | 50219052 ~ 50220138 (+) |
G1184078 | NA | non-coding | downstream | 143597 | 50267023 ~ 50267498 (+) |
G1184178 | NA | non-coding | downstream | 294270 | 50417696 ~ 50418945 (+) |
G1184296 | NA | non-coding | downstream | 477523 | 50600949 ~ 50601164 (+) |
G1184298 | NA | non-coding | downstream | 479354 | 50602780 ~ 50603353 (+) |
G1183875 | NA | other | upstream | 230933 | 49882821 ~ 49883435 (+) |
G1183819 | NA | other | upstream | 279354 | 49832221 ~ 49835014 (+) |
ndua4 | ndua4 | other | upstream | 529806 | 49580324 ~ 49584562 (+) |
G1182742 | NA | other | upstream | 688145 | 49419570 ~ 49426223 (+) |
LOC110486677 | LOC106601591 | other | upstream | 830865 | 49281106 ~ 49284116 (+) |
G1184435 | LOC106606845 | other | downstream | 862387 | 50985813 ~ 50986566 (+) |
LOC110487554 | LOC106601638 | other | downstream | 1260746 | 51384172 ~ 51394113 (+) |
G1185436 | NA | other | downstream | 1322481 | 51445907 ~ 51446557 (+) |
G1185521 | NA | other | downstream | 1504256 | 51627682 ~ 51628676 (+) |
G1185527 | NA | other | downstream | 1528187 | 51651613 ~ 51653770 (+) |