LOC110486707 (asb16)


Basic Information

Item Value
gene id LOC110486707
gene name asb16
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 50127555 ~ 50130302 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558491.2
TTGGGGCAACAATATCTTGTGAAAGGACATTTGGACGTGTCTGTAAAACACGTCATGAAGTAGTCGTATGCAAATTACATTATCCACAACAGCAAATGTGCTATATTTTGTATAGTAACTTACTTGAGTTCACATGAAAAAAATCTGAATTCACAGTGGTGACAAGTTCAAGACCTCAGTGGGTTGCTTGAGATTCTGCTCCAGCTTTGGGTGTCATGTCCAGGGACACATTTGCCTTCAGCTCAGCCGCCTTGCATTCTCTGAAAGTGGATCAGGAGCTCCAGGAGTGGAAGGATAAGCGGCAGGCATTGGCCCACAGGAGGGCCATGAGCCGGCCACCTGTGTCCCGGGCCTCCAGACCCCCTCCCAGACAGCAGCAGGGCCTCCAGGAGATCTGGGTCTATGAGGCCCGATGCAGAGACACCACAATCCACAACACATTAATGTGTGGGGACATGAAGGGAGTGCACACTGTGTTAAAGGACCCCTGCATGGTCAACGCACTGATGGAAACAGTACATGAGGAGATGGTGTGGGCTGCAGAGCTGGGGATGTGGACCATGAGCTCCAAGATCAAGCAGACATCTGCATTGCGTCTGGCAGCCAGCAAGGGACACTCAGGCTGTGTGGAGGAGCTGCTGTTTCGAGGGGCGGAGGTGGATGCTGACCCTGGTGGCAGCACAGCCCTGCATGATGCCTGTATAGGTGGCCATGACAGCTGTGTCCAGCTGCTGCTAGCCCACAGAGCAGACCCTGACCTGCTGGCAGAAGACGGCAGTGCACCCCTTCACCTCTGCAGCACAGCCCAGACATTTCAGTGTGCTGAGCTGCTGGTGACGGGTGGGGCAGAGGCCAATGTGTTGACCAGTGAAACAAAGATAACGCCCCTCCATGTGGTGGCTCGTCGGGGTATGGAGGAGCATGTGAAGCTCTTTCTGTCCCATGGAGCTGACGTGTCAGCCAGGAACCGTGAGGGGGAGACCCCCCTGAATGCAGCCTGTGGTGGGGCTGAGAGGCCTGCCGAGGCTGGGCGGTACCTCCGCATGGTCCAGATGCTGCTGGGAGCTGGGGCTGACCCCTGCACTGCAGGCAGGAAACACCACACACCTCTACACAACGCCTGTAGTAACTGCAGCCCACGCATTGCAGAAATGTTACTACAACACGGAGCCAAAGCAGACGTGCAGAACTGTGCAGGATACACACCCATGGACTGTCTGTTACAGGTGGTGGAAGACTTTCCAGACCAGCATCCGGAGGCTGTAGCACGCTCCCTCCTAAACCACGGGGCCAAGGCCGGTAAAAGCTTGATGCTGaagctctgcctcctctcccctgccACTCTGGAGGTAATGCTGAACTGCTATGCTGTTGTCCCTTCCTGTGAGGAATGGATGCAGTCTATCCCTCCTGAGATACATGAGACGCACCAGGGTTTCTTTGACTCTGTGAGGCAGATGACGAGCCAGCCCCGCTCCCTGCAGCACCTGTGCCGCTGTGCTCTGCGCCGCCACTTAGGAAAAGGTATCGACGCAGCTATCAGTAGATTGGACATCCCCAGCTCTCTGATGGAGTATCTACTACTTCGGAATGACGGGGAGATTCGGTGAATAAAGTGAAACACATGGGACA

Function

symbol description
asb16 Predicted to be involved in protein ubiquitination. Predicted to act upstream of or within intracellular signal transduction. Orthologous to human ASB16 (ankyrin repeat and SOCS box containing 16).

NR:

description
ankyrin repeat and SOCS box protein 16-like

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K10338 ASB16; ankyrin repeat and SOCS box protein 16

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558491.2 True 1632 mRNA 0.55 7 50127555 50130302

Neighbor

gene id symbol gene type direction distance location
LOC110486710 LOC106601657 coding downstream 354 50123190 ~ 50127201 (-)
si:ch211-214j24.15 LOC106606868 coding downstream 60157 50059034 ~ 50067398 (-)
LOC110486699 LOC106601618 coding downstream 87222 49970722 ~ 50040333 (-)
LOC110486698 LOC106601594 coding downstream 273884 49831067 ~ 49853671 (-)
LOC118938314 NA coding downstream 585806 49537199 ~ 49544276 (-)
LOC110486713 NA coding upstream 500703 50631005 ~ 50633690 (-)
LOC110486716 LOC106601616 coding upstream 517132 50647434 ~ 50653284 (-)
LOC110486719 LOC105013088 coding upstream 559880 50690182 ~ 50697090 (-)
LOC118938085 NA coding upstream 589510 50719812 ~ 50730095 (-)
LOC110485208 LOC106606837 coding upstream 601795 50732097 ~ 50824433 (-)
G1184672 LOC106606818 non-coding downstream 22489 50103579 ~ 50105066 (-)
G1184671 LOC106601648 non-coding downstream 32444 50092216 ~ 50095111 (-)
G1184669 NA non-coding downstream 34485 50092560 ~ 50093070 (-)
G1184668 LOC100136769 non-coding downstream 42839 50079143 ~ 50084716 (-)
G1184661 NA non-coding downstream 62367 50048786 ~ 50065188 (-)
G1184782 NA non-coding upstream 174535 50304837 ~ 50305278 (-)
G1184896 NA non-coding upstream 364672 50494974 ~ 50495465 (-)
G1184958 NA non-coding upstream 472542 50602844 ~ 50603081 (-)
G1184963 NA non-coding upstream 477318 50607620 ~ 50607896 (-)
G1184964 NA non-coding upstream 477667 50607969 ~ 50608323 (-)
G1183706 NA other downstream 439099 49685338 ~ 49688456 (-)
LOC110486687 LOC106601611 other downstream 623545 49486817 ~ 49504819 (-)
setd1a LOC106585476 other downstream 770341 49346540 ~ 49361234 (-)
G1184986 NA other upstream 496345 50626647 ~ 50628539 (-)
G1185046 NA other upstream 649963 50780265 ~ 50781858 (-)
G1186080 NA other upstream 1191498 51321800 ~ 51323931 (-)
G1186075 NA other upstream 1222007 51352309 ~ 51373954 (-)

Expression


Co-expression Network