LOC110486706 (LOC106601646)


Basic Information

Item Value
gene id LOC110486706
gene name LOC106601646
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 50130444 ~ 50135992 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558490.2
CTTGAACGTGGCGGTGCCAATCTCACAAAATTTCGCATTTACAACATCTTGCGTTGCTTGAAAAGTTAAACTTTTTTTACGGCAGCAAGTACTGAATGGCTGAATTAAATGACATCTACACTTTCGATTGTTCTTATGTATCAATGTAAATAGACAGTTAGAAAAGACATTCGACACGAGATCGCATGACTGCTATGACTTGCAAGTGGAATGGATTATTTAACGTTGGGGAGGACTTCAATGATGAGgatctACTTGAGATGGACTGGTCTGCTCCATCAGTGTCTGCAGCACAGTCCTGTTTCCTCCGTTCAACTGCAGCATCAACTCCTGCTGCCCCCTATGGTCAGAATAACTCACATCAACCAACCACAGACGGCATACTTGCCCATAGGGGCCTGTCGAATGGCCCAGGGTCAGATAATTCAACACCGAACAGTGTAGGACAGTCTCCTGCTTTGGGTTTGAGACAGCTCTCTACATCTAAACCATTGCACTcattccctcttccccctctccaccttCCTACACTGAGTAGGGGACTGTGTACAGTTACCCAACAGAGCTCCTCACCAGCCCAACAGATGAAGTCAAACACAACAGGACAGCAAGAGGCCCCCTCGCCGCAGGATGACTTTGATGATTGGGATGTTGACCTGGCAGACCTAGATGAAAGTGACCCACAGATGAGCACTTGGGCTCAGGTCCGAGAAACTGCTCCAGCTGCAGATCTAACCAAGCCCAGCGATGACTCTGTATCCCCAGACAAAAGACTACGGCCCACAGCCTGTGGTGGTGCTCAAACCGGGCCCAATGTGGGTCTGAGAGGATTCAGTACCTCTAACCAAACGTCTGGTCttcccagtagtagtagtatactcCACAAGTCCTCATTCCCtggtcccttcccctctccccgcCCTGATCCTAGTGCTACTTTCCTCCTAGCTCCACCCCAAAGCCCCTTCCCCAGGCCTGTGACCCCCAGGCCAGTCAGAGGGCTTCCTTCCCAGGTACAGAGGCCCTGGGCTACACCTCTAGCTCAGGGACGCAGCCTTTTTGACCCCATCTCCCCAGCCCCCTCTAGTAGGTTTGGTGGACCCATGCCTTCCCCCAGTCTCACCCCACGTTCCCTCCACACGCCCGTCTTCACTAACCACTTGATTCAGCTGGTGTCCAACTCCAACAAGACCCCCCAGAGACCGGGTTCTGACCACATCCGGCCCAATACCCGCCGCTTCCCCGGGCCTGCAGGAATCCTACCACAACAGCAGCTCCATGGGCAGAGCCTGGATGACATCGTGGTGGCCATTCCTCAGACACCTGCACATGGGGCTGTGGCTCGGCTGCCCAGTCAGGTTCCCAGCTCTCAGACTGAGGAAGAGGATTTCAGTGGAGGTCCGTGGGCAGTGATGAAAGCAGAGATGGGATTGGACGAAAGGAACTCCTCCTGTTTTCTGCACTCTTACAGCGTGGCCATGGTACTCCGCAAGgCGGCCCTGAAACAGCTGGTGAAGAACAAGGTCCCCAACATGGCTGTGGTACTAAAGAGCATCCTCCACACACACGCTGATGCCAAGGCTGTGTTCAGGGATCCCACAGGAGAGATGCAGGGCACAGTGCACCGGCGCCTCCTAGAGGACAGACTAGGGGAGCTCAAGACGGGGGCGTTACTGTTGCTCAAACAGGTGGGTGTGTTCTCTCCGTCCCACCGTAACCACTACCTGAACGTGACACCCAACAACCTCCTGAGGATCTACCCTCCTGACGGCTCGACCCCGTCCTCCACACAGAGCCAGCTGCTCCCACTCCCCCTGGAGCCAATGTTGGAATCACCTGATCAGTCCTCCAGTGTCCCAGGAGCCCCTGTGTCTCAGATGGAGTTGTTctatgataatgatgatgaagaggatgtTCGGGCCCCACAGGTCTCTGCAGACTCTGGTGCTGGCTCCTCTAGTGTTCCACAGGGCCCGCCGGCTGCACCACTGGACCTGTCCTGGGACGCAGATGACCTTGATGAGCTTCTTGGGGAGTTGCCTGTTGAGTCCTACTGCCTCTGACACCTGCCCACCTACCCCTTACGGACAAGGTACATTTATACAGGGGAGATGTAGGACAACTAAGCTGTCACTTACATGTGAATTTGAGTTTGGTGCATTCTGACCGCACGTTGGATGCCTTTCTACCTGATTCCCCCGGAGAATCTTGTCGCCTGAAGTGCTATCATTTTGTGTTTGGTGTGCTGTGACCGTTAATCGCACCATTATAAATTGCATGTCGGCCGTGTGGGGGGAAAAACTCTGAGATGTTGGGAACTGGGACTGTCGCTCCCGCGTCTCCCCAATTTGAATTAAGCTTCACTACCCATACTGCTACGGGTACATCCCATACTGCTACGGGTTCATCCCATACTGCTACGGGTACATCCCATACTGCTACGGGTACATCCCATAGACAGTCATTCCCCTGTTTGAAGACCTGCTGGCTGatgttttgtatatttttttacttcacaGTGCAGTCTCCTCTAAATCATAGCTAACTACTGTATGTGCACATAATGTCTTGTAAAACATGTATATATTAAAGAAGACTTCTGTTCAATAATACACTATACACAACTGAAATGGTCTCTGATTTTCTTGTCTCTAATTTGCGGTCTTTGGAGTGATTGAGAATTAAAATGCATGAGAATGCACTTACTAATAGGAACAGTATATGGAAAATCAAACATTACAATTAAATATCCATTTAAACCCTGGCTTGATTGATCCACACTTCTAGTTGAATTGCATCGTGGTGGTGTGCTGTAATTAGGCACCGGTGTTGCAAGGTTTCATTGGAGAGGCAGAGTATCCTGCTGTTCATAGCCATTGTCCATTAATTGGAACTGCAAATCTTTTTCTCAAAGTTTTTAAACAGTTTTCTTGTCTTTCAGTCAACTAACACTATTTTAAACATTGATGGCTCTGATGAAACATGGTGTGAACTAAAGTATCAGCCTGAAGTGAATGACTTTAAACATTGTCTCCTGGAGCCTTCTGACTGTCATTCTCTGCCATGCTCTTCTTTCTCCATTTCTGTCTTATTGCCATTTCCTCTGTCTTTCCTATCCCCTTCCTCTGGCTATGTTCTGGTCCAGCCTGTTTACCATGCATTACAATTGTGTAG
>XM_021558488.2
CTTGAACGTGGCGGTGCCAATCTCACAAAATTTCGCATTTACAACATCTTGCGTTGCTTGAAAAGTTAAACTTTTTTTACGGCAGCAAGTACTGAATGGCTGAATTAAATGACATCTACACTTTCGATTGTTCTTATGTATCAATGTAAATAGACAGTTAGAAAAGACATTCGACACGAGATCGCATGACTGCTATGACTTGCAAGTGGAATGGATTATTTAACGTTGGGGAGGACTTCAATGATGAGGTGCTGCAAACTGATTTACACAgatctACTTGAGATGGACTGGTCTGCTCCATCAGTGTCTGCAGCACAGTCCTGTTTCCTCCGTTCAACTGCAGCATCAACTCCTGCTGCCCCCTATGGTCAGAATAACTCACATCAACCAACCACAGACGGCATACTTGCCCATAGGGGCCTGTCGAATGGCCCAGGGTCAGATAATTCAACACCGAACAGTGTAGGACAGTCTCCTGCTTTGGGTTTGAGACAGCTCTCTACATCTAAACCATTGCACTcattccctcttccccctctccaccttCCTACACTGAGTAGGGGACTGTGTACAGTTACCCAACAGAGCTCCTCACCAGCCCAACAGATGAAGTCAAACACAACAGGACAGCAAGAGGCCCCCTCGCCGCAGGATGACTTTGATGATTGGGATGTTGACCTGGCAGACCTAGATGAAAGTGACCCACAGATGAGCACTTGGGCTCAGGTCCGAGAAACTGCTCCAGCTGCAGATCTAACCAAGCCCAGCGATGACTCTGTATCCCCAGACAAAAGACTACGGCCCACAGCCTGTGGTGGTGCTCAAACCGGGCCCAATGTGGGTCTGAGAGGATTCAGTACCTCTAACCAAACGTCTGGTCttcccagtagtagtagtatactcCACAAGTCCTCATTCCCtggtcccttcccctctccccgcCCTGATCCTAGTGCTACTTTCCTCCTAGCTCCACCCCAAAGCCCCTTCCCCAGGCCTGTGACCCCCAGGCCAGTCAGAGGGCTTCCTTCCCAGGTACAGAGGCCCTGGGCTACACCTCTAGCTCAGGGACGCAGCCTTTTTGACCCCATCTCCCCAGCCCCCTCTAGTAGGTTTGGTGGACCCATGCCTTCCCCCAGTCTCACCCCACGTTCCCTCCACACGCCCGTCTTCACTAACCACTTGATTCAGCTGGTGTCCAACTCCAACAAGACCCCCCAGAGACCGGGTTCTGACCACATCCGGCCCAATACCCGCCGCTTCCCCGGGCCTGCAGGAATCCTACCACAACAGCAGCTCCATGGGCAGAGCCTGGATGACATCGTGGTGGCCATTCCTCAGACACCTGCACATGGGGCTGTGGCTCGGCTGCCCAGTCAGGTTCCCAGCTCTCAGACTGAGGAAGAGGATTTCAGTGGAGGTCCGTGGGCAGTGATGAAAGCAGAGATGGGATTGGACGAAAGGAACTCCTCCTGTTTTCTGCACTCTTACAGCGTGGCCATGGTACTCCGCAAGgCGGCCCTGAAACAGCTGGTGAAGAACAAGGTCCCCAACATGGCTGTGGTACTAAAGAGCATCCTCCACACACACGCTGATGCCAAGGCTGTGTTCAGGGATCCCACAGGAGAGATGCAGGGCACAGTGCACCGGCGCCTCCTAGAGGACAGACTAGGGGAGCTCAAGACGGGGGCGTTACTGTTGCTCAAACAGGTGGGTGTGTTCTCTCCGTCCCACCGTAACCACTACCTGAACGTGACACCCAACAACCTCCTGAGGATCTACCCTCCTGACGGCTCGACCCCGTCCTCCACACAGAGCCAGCTGCTCCCACTCCCCCTGGAGCCAATGTTGGAATCACCTGATCAGTCCTCCAGTGTCCCAGGAGCCCCTGTGTCTCAGATGGAGTTGTTctatgataatgatgatgaagaggatgtTCGGGCCCCACAGGTCTCTGCAGACTCTGGTGCTGGCTCCTCTAGTGTTCCACAGGGCCCGCCGGCTGCACCACTGGACCTGTCCTGGGACGCAGATGACCTTGATGAGCTTCTTGGGGAGTTGCCTGTTGAGTCCTACTGCCTCTGACACCTGCCCACCTACCCCTTACGGACAAGGTACATTTATACAGGGGAGATGTAGGACAACTAAGCTGTCACTTACATGTGAATTTGAGTTTGGTGCATTCTGACCGCACGTTGGATGCCTTTCTACCTGATTCCCCCGGAGAATCTTGTCGCCTGAAGTGCTATCATTTTGTGTTTGGTGTGCTGTGACCGTTAATCGCACCATTATAAATTGCATGTCGGCCGTGTGGGGGGAAAAACTCTGAGATGTTGGGAACTGGGACTGTCGCTCCCGCGTCTCCCCAATTTGAATTAAGCTTCACTACCCATACTGCTACGGGTACATCCCATACTGCTACGGGTTCATCCCATACTGCTACGGGTACATCCCATACTGCTACGGGTACATCCCATAGACAGTCATTCCCCTGTTTGAAGACCTGCTGGCTGatgttttgtatatttttttacttcacaGTGCAGTCTCCTCTAAATCATAGCTAACTACTGTATGTGCACATAATGTCTTGTAAAACATGTATATATTAAAGAAGACTTCTGTTCAATAATACACTATACACAACTGAAATGGTCTCTGATTTTCTTGTCTCTAATTTGCGGTCTTTGGAGTGATTGAGAATTAAAATGCATGAGAATGCACTTACTAATAGGAACAGTATATGGAAAATCAAACATTACAATTAAATATCCATTTAAACCCTGGCTTGATTGATCCACACTTCTAGTTGAATTGCATCGTGGTGGTGTGCTGTAATTAGGCACCGGTGTTGCAAGGTTTCATTGGAGAGGCAGAGTATCCTGCTGTTCATAGCCATTGTCCATTAATTGGAACTGCAAATCTTTTTCTCAAAGTTTTTAAACAGTTTTCTTGTCTTTCAGTCAACTAACACTATTTTAAACATTGATGGCTCTGATGAAACATGGTGTGAACTAAAGTATCAGCCTGAAGTGAATGACTTTAAACATTGTCTCCTGGAGCCTTCTGACTGTCATTCTCTGCCATGCTCTTCTTTCTCCATTTCTGTCTTATTGCCATTTCCTCTGTCTTTCCTATCCCCTTCCTCTGGCTATGTTCTGGTCCAGCCTGTTTACCATGCATTACAATTGTGTAGA
>XM_036941411.1
CTTGAACGTGGCGGTGCCAATCTCACAAAATTTCGCATTTACAACATCTTGCGTTGCTTGAAAAGTTAAACTTTTTTTACGGCAGCAAGTACTGAATGGCTGAATTAAATGACATCTACACTTTCGATTGTTCTTATGTATCAATGTAAATAGACAGTTAGAAAAGACATTCGACACGAGATCGCATGACTGCTATGACTTGCAAGTGGAATGGATTATTTAACGTTGGGGAGGACTTCAATGATGAGgatctACTTGAGATGGACTGGTCTGCTCCATCAGTGTCTGCAGCACAGTCCTGTTTCCTCCGTTCAACTGCAGCATCAACTCCTGCTGCCCCCTATGGTCAGAATAACTCACATCAACCAACCACAGACGGCATACTTGCCCATAGGGGCCTGTCGAATGGCCCAGGGTCAGATAATTCAACACCGAACAGTGTAGGACAGTCTCCTGCTTTGGGTTTGAGACAGCTCTCTACATCTAAACCATTGCACTcattccctcttccccctctccaccttCCTACACTGAGTAGGGGACTGTGTACAGTTACCCAACAGAGCTCCTCACCAGCCCAACAGATGAAGTCAAACACAACAGGACAGCAAGAGGCCCCCTCGCCGCAGGATGACTTTGATGATTGGGATGTTGACCTGGCAGACCTAGATGAAAGTGACCCACAGATGAGCACTTGGGCTCAGGTCCGAGAAACTGCTCCAGCTGCAGATCTAACCAAGCCCAGCGATGACTCTGTATCCCCAGACAAAAGACTACGGCCCACAGCCTGTGGTGGTGCTCAAACCGGGCCCAATGTGGGTCTGAGAGGATTCAGTACCTCTAACCAAACGTCTGGTCttcccagtagtagtagtatactcCACAAGTCCTCATTCCCtggtcccttcccctctccccgcCCTGATCCTAGTGCTACTTTCCTCCTAGCTCCACCCCAAAGCCCCTTCCCCAGGCCTGTGACCCCCAGGCCAGTCAGAGGGCTTCCTTCCCAGGTACAGAGGCCCTGGGCTACACCTCTAGCTCAGGGACGCAGCCTTTTTGACCCCATCTCCCCAGCCCCCTCTAGTAGGTTTGGTGGACCCATGCCTTCCCCCAGTCTCACCCCACGTTCCCTCCACACGCCCGTCTTCACTAACCACTTGATTCAGCTGGTGTCCAACTCCAACAAGACCCCCCAGAGACCGGGTTCTGACCACATCCGGCCCAATACCCGCCGCTTCCCCGGGCCTGCAGGAATCCTACCACAACAGCTCCATGGGCAGAGCCTGGATGACATCGTGGTGGCCATTCCTCAGACACCTGCACATGGGGCTGTGGCTCGGCTGCCCAGTCAGGTTCCCAGCTCTCAGACTGAGGAAGAGGATTTCAGTGGAGGTCCGTGGGCAGTGATGAAAGCAGAGATGGGATTGGACGAAAGGAACTCCTCCTGTTTTCTGCACTCTTACAGCGTGGCCATGGTACTCCGCAAGgCGGCCCTGAAACAGCTGGTGAAGAACAAGGTCCCCAACATGGCTGTGGTACTAAAGAGCATCCTCCACACACACGCTGATGCCAAGGCTGTGTTCAGGGATCCCACAGGAGAGATGCAGGGCACAGTGCACCGGCGCCTCCTAGAGGACAGACTAGGGGAGCTCAAGACGGGGGCGTTACTGTTGCTCAAACAGGTGGGTGTGTTCTCTCCGTCCCACCGTAACCACTACCTGAACGTGACACCCAACAACCTCCTGAGGATCTACCCTCCTGACGGCTCGACCCCGTCCTCCACACAGAGCCAGCTGCTCCCACTCCCCCTGGAGCCAATGTTGGAATCACCTGATCAGTCCTCCAGTGTCCCAGGAGCCCCTGTGTCTCAGATGGAGTTGTTctatgataatgatgatgaagaggatgtTCGGGCCCCACAGGTCTCTGCAGACTCTGGTGCTGGCTCCTCTAGTGTTCCACAGGGCCCGCCGGCTGCACCACTGGACCTGTCCTGGGACGCAGATGACCTTGATGAGCTTCTTGGGGAGTTGCCTGTTGAGTCCTACTGCCTCTGACACCTGCCCACCTACCCCTTACGGACAAGGTACATTTATACAGGGGAGATGTAGGACAACTAAGCTGTCACTTACATGTGAATTTGAGTTTGGTGCATTCTGACCGCACGTTGGATGCCTTTCTACCTGATTCCCCCGGAGAATCTTGTCGCCTGAAGTGCTATCATTTTGTGTTTGGTGTGCTGTGACCGTTAATCGCACCATTATAAATTGCATGTCGGCCGTGTGGGGGGAAAAACTCTGAGATGTTGGGAACTGGGACTGTCGCTCCCGCGTCTCCCCAATTTGAATTAAGCTTCACTACCCATACTGCTACGGGTACATCCCATACTGCTACGGGTTCATCCCATACTGCTACGGGTACATCCCATACTGCTACGGGTACATCCCATAGACAGTCATTCCCCTGTTTGAAGACCTGCTGGCTGatgttttgtatatttttttacttcacaGTGCAGTCTCCTCTAAATCATAGCTAACTACTGTATGTGCACATAATGTCTTGTAAAACATGTATATATTAAAGAAGACTTCTGTTCAATAATACACTATACACAACTGAAATGGTCTCTGATTTTCTTGTCTCTAATTTGCGGTCTTTGGAGTGATTGAGAATTAAAATGCATGAGAATGCACTTACTAATAGGAACAGTATATGGAAAATCAAACATTACAATTAAATATCCATTTAAACCCTGGCTTGATTGATCCACACTTCTAGTTGAATTGCATCGTGGTGGTGTGCTGTAATTAGGCACCGGTGTTGCAAGGTTTCATTGGAGAGGCAGAGTATCCTGCTGTTCATAGCCATTGTCCATTAATTGGAACTGCAAATCTTTTTCTCAAAGTTTTTAAACAGTTTTCTTGTCTTTCAGTCAACTAACACTATTTTAAACATTGATGGCTCTGATGAAACATGGTGTGAACTAAAGTATCAGCCTGAAGTGAATGACTTTAAACATTGTCTCCTGGAGCCTTCTGACTGTCATTCTCTGCCATGCTCTTCTTTCTCCATTTCTGTCTTATTGCCATTTCCTCTGTCTTTCCTATCCCCTTCCTCTGGCTATGTTCTGGTCCAGCCTGTTTACCATGCATTACAATTGTGTAGA

Function

NR:

description
uncharacterized protein C17orf53 homolog isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558490.2 False 3174 mRNA 0.50 10 50130444 50135991
XM_021558488.2 False 3197 mRNA 0.50 10 50130444 50135992
XM_036941411.1 True 3172 mRNA 0.50 10 50130444 50135992

Neighbor

gene id symbol gene type direction distance location
LOC110486708 LOC106606819 coding upstream 7018 50114368 ~ 50123426 (+)
LOC110486704 ubtf coding upstream 16481 50091337 ~ 50113963 (+)
LOC100136769 LOC100136769 coding upstream 39788 50079281 ~ 50090662 (+)
LOC110486703 NA coding upstream 54188 50073605 ~ 50076256 (+)
LOC110486702 mien1 coding upstream 58381 50068892 ~ 50125626 (+)
LOC110486711 asic2 coding downstream 16388 50152380 ~ 50600432 (+)
LOC110486712 LOC106600671 coding downstream 489728 50625720 ~ 50631000 (+)
LOC110486714 LOC106601613 coding downstream 502529 50638521 ~ 50641453 (+)
LOC110486715 LOC106601614 coding downstream 508668 50644660 ~ 50647403 (+)
LOC110486720 LOC106606512 coding downstream 519029 50655021 ~ 50658896 (+)
G1183980 LOC106606868 non-coding upstream 66085 50063540 ~ 50064359 (+)
G1183973 NA non-coding upstream 87097 50043138 ~ 50043347 (+)
G1184046 NA non-coding downstream 83060 50219052 ~ 50220138 (+)
G1184078 NA non-coding downstream 131031 50267023 ~ 50267498 (+)
G1184178 NA non-coding downstream 281704 50417696 ~ 50418945 (+)
G1184296 NA non-coding downstream 464957 50600949 ~ 50601164 (+)
G1184298 NA non-coding downstream 466788 50602780 ~ 50603353 (+)
G1183875 NA other upstream 247009 49882821 ~ 49883435 (+)
G1183819 NA other upstream 295430 49832221 ~ 49835014 (+)
ndua4 ndua4 other upstream 545882 49580324 ~ 49584562 (+)
G1182742 NA other upstream 704221 49419570 ~ 49426223 (+)
LOC110486677 LOC106601591 other upstream 846941 49281106 ~ 49284116 (+)
G1184435 LOC106606845 other downstream 849821 50985813 ~ 50986566 (+)
LOC110487554 LOC106601638 other downstream 1248180 51384172 ~ 51394113 (+)
G1185436 NA other downstream 1309915 51445907 ~ 51446557 (+)
G1185521 NA other downstream 1491690 51627682 ~ 51628676 (+)
G1185527 NA other downstream 1515621 51651613 ~ 51653770 (+)

Expression


Co-expression Network