Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110486711 |
| gene name | asic2 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048577.1 |
| NCBI id | CM023231.2 |
| chromosome length | 73332040 |
| location | 50152380 ~ 50600432 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| asic2 | Predicted to enable ligand-gated sodium channel activity. Acts upstream of or within response to steroid hormone. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including brain; eye; gill; olfactory rosette; and ovary. Orthologous to human ASIC2 (acid sensing ion channel subunit 2). |
| description |
|---|
| PREDICTED: acid-sensing ion channel 2 isoform X1 |
| id | name | namespace |
|---|---|---|
| GO:0035725 | sodium ion transmembrane transport | biological_process |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005272 | sodium channel activity | molecular_function |
| id | description |
|---|---|
| K04828 | ASIC2, ACCN1, BNAC1; acid-sensing ion channel 2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021558500.2 | False | 4779 | mRNA | 0.50 | 11 | 50152380 | 50600432 |
| XM_036941412.1 | True | 6166 | mRNA | 0.50 | 10 | 50404837 | 50600432 |
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NC_048577.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110486706 | LOC106601646 | coding | upstream | 16388 | 50130444 ~ 50135992 (+) |
| LOC110486708 | LOC106606819 | coding | upstream | 28954 | 50114368 ~ 50123426 (+) |
| LOC110486704 | ubtf | coding | upstream | 38417 | 50091337 ~ 50113963 (+) |
| LOC100136769 | LOC100136769 | coding | upstream | 61724 | 50079281 ~ 50090662 (+) |
| LOC110486703 | NA | coding | upstream | 76124 | 50073605 ~ 50076256 (+) |
| LOC110486712 | LOC106600671 | coding | downstream | 25288 | 50625720 ~ 50631000 (+) |
| LOC110486714 | LOC106601613 | coding | downstream | 38089 | 50638521 ~ 50641453 (+) |
| LOC110486715 | LOC106601614 | coding | downstream | 44228 | 50644660 ~ 50647403 (+) |
| LOC110486720 | LOC106606512 | coding | downstream | 54589 | 50655021 ~ 50658896 (+) |
| LOC110486718 | LOC106606839 | coding | downstream | 58781 | 50659213 ~ 50681790 (+) |
| LOC110486702 | mien1 | non-coding | upstream | 26754 | 50068892 ~ 50125626 (+) |
| G1183980 | LOC106606868 | non-coding | upstream | 88021 | 50063540 ~ 50064359 (+) |
| G1183973 | NA | non-coding | upstream | 109033 | 50043138 ~ 50043347 (+) |
| G1184296 | NA | non-coding | downstream | 517 | 50600949 ~ 50601164 (+) |
| G1184298 | NA | non-coding | downstream | 2348 | 50602780 ~ 50603353 (+) |
| G1184302 | NA | non-coding | downstream | 7659 | 50608091 ~ 50608517 (+) |
| G1184308 | NA | non-coding | downstream | 13128 | 50613560 ~ 50614105 (+) |
| G1184328 | NA | non-coding | downstream | 87291 | 50687723 ~ 50687995 (+) |
| G1183875 | NA | other | upstream | 268945 | 49882821 ~ 49883435 (+) |
| G1183819 | NA | other | upstream | 317366 | 49832221 ~ 49835014 (+) |
| ndua4 | ndua4 | other | upstream | 567818 | 49580324 ~ 49584562 (+) |
| G1182742 | NA | other | upstream | 726157 | 49419570 ~ 49426223 (+) |
| LOC110486677 | LOC106601591 | other | upstream | 868877 | 49281106 ~ 49284116 (+) |
| G1184435 | LOC106606845 | other | downstream | 385381 | 50985813 ~ 50986566 (+) |
| LOC110487554 | LOC106601638 | other | downstream | 783740 | 51384172 ~ 51394113 (+) |
| G1185436 | NA | other | downstream | 845475 | 51445907 ~ 51446557 (+) |
| G1185521 | NA | other | downstream | 1027250 | 51627682 ~ 51628676 (+) |
| G1185527 | NA | other | downstream | 1051181 | 51651613 ~ 51653770 (+) |
