LOC110486712 (LOC106600671)


Basic Information

Item Value
gene id LOC110486712
gene name LOC106600671
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 50625720 ~ 50631000 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558503.2
TTCATTTCCGTAAATAAAATCGGTCACCATTTTCTCTTCTTGATGTGAAGTTAGCGGCATGGAGAAGGCACGTTTCATCGTATCACGATCGAAACAGCATTTTGCGTTGCAAATAGAATTGTAGCTATCTGAACACtatttcatttgatttgtaaGACTGAAGCCTTTCAAATACGTTTCTGTAAACGCATTACCATCAAACTAATAGTAGCTAGCACATTTATAGCAAGCTGTAAAAAAGCTaactgtattgtgttgtcatgCTTTATGGTTCACAGTACTTGCTTACCACTCTGTAGCTCAGTCAATTTATTCGCGCGCTATTGTTGCCATCATTCCCTCCCCAGCGCGTGTGTGTAAAGCATGGAGATTGAGGGGAGAGATTTCATGAACACTCCCCCCTTGAAAACGGTGCGGTTTGGGGGCAATGTTGTTGCCACGTTAGCGAAATTCAAACAGGGAGACACCAGTGACTATGAGTTGTTGAAACATCAGCTGGCAGATCCAGATATCAAGGATGCCCAAATCATCAACTGGCTGCAGGAGTTCCGGAATTGTGTGACACAACTCAGCAAAGACCATGAGCAGCTGATCTATGTGGCTCTGAGGCTGCCGTGGCTGGGCCGAAGCCCTGCCGTAGTGGAGGAGTATCTGTCCTTCCTCAGTAACCTGGTATCTGCCCAGACGGTCTACCTCCGGGCCTGCCTCAAGATGGTGGTCTCCAACTTCAAACCCAAGAGAGTGAAGATCTGTGAGGGAGGAGTGGACATCTCTGACTCGGATGATGACGATGAAAACCTTCCAAGAAGTTTTGACCAGTGTCACCAGGCCCTGCAGCTGATTGGCAGATATGTCCCATCCACCAGCTGTTTCCTGATGCCCATTCTGATTGACAACTTTCCTTTTGTGCAGAAATCTTCCAGAACCCTGGAGTGTTATGTCCATAACCTTCTGCGGGTGGCGGTGTACATCCCCTCTCTACGACGAGACGTCCTGGAACTCATCATCAGTAGGATGCTCAAACTGGACGTGAGTGCTCCccggggagagatagaggaggtggaggagaacgCTGTGCAGCAGGAGTTGaaaggagagcaggaggaggagggcctcTTTGACATGgatGAGGATGTGTGTTCAGTGAAGTCCAGTCCGGCAGGGACCAATGTGATGGTCCACCCTGTCGCTGAGAGACTGGACACTCTCATGGTTGTGCTGCTGGCCTTCATCAAGGACATGTGCCACGTCAACAgttGTCTGGATGTGGAGCGGACTAAGGATCTGTACAAGGACCTGGTGGGTGTGTTTGATAAACTTATCCTACCTACACACGCCTCCTGTCACGTCCAATACGCCCTCTTCTACCTCTGCAGCTTCAGACTGGCTCTGGCGGAGGCGTTTCTGGAACACCTGTGGAGGTTACTGCAGAGCCCGTCTCACCCGGCAGTACTGCGCCAATCTGCCGCTGGCTACATGGGTAGCTTCCTGGCCCGTGCCAAATTCCTGCCCGTCGCTACGGTGCGTGCGTGTCTGGACCTGCTGGTCCCCTGGCTCCACCTATACATAGACAGCCAGGACTCCGGCTCCCGGGCCTACTGTGACATCACGCTACACGGGCCCTTCTACAACGCCTGCCAGGCTGTCTTCTACACACTCATCTTCAGACACAGGAGCATCCTGGAGGGCAACATGAAGAAAGGGCTGGCGTACCTGCAGAGTCTGAACCTAGAGAGGATAGTGATGTGTCAGCTCAACCCTCTGAaggtctgcctgcctgccgtcaCTAACATGTTTGCTGCCATCACCAGaaaGTACCAGTTGGTGTTCTGCTACACCATCATCGAGAGGAACAACCGTCATATTCTCCCCGTGGTCCGCAGCTCCGTGGGGGGCGACTGTGTGTCCACCAACACCAACCCCCTGGACAGTTTCTTCCCCTTCGACCCCTACGTGCTCAAGAGgtcaAGTAAACTCATCGAGCCCCTCTACCAGGTGTGGGAGGAGCCAGCAGACACTGAGGTGGACACAGTCACCACCAAGAGAGTCAGACCGtgctCGGATGCAGATGAGGATGACTTCCTGCGAGGGGAGACGCCGGAGACAAAGGGGGTGATGGGTATGACCCCTGGCTCGTATGAGTCACACCTCCACAGCCCTAGCAGTGTGGGCTCGCCGCCCATCTCCTTCCTACAGAGACCCTTCTGACACCCCTGTATTTAACATGGACTCATCCACAACCCCCTGAAAATTTGACTATTCCACAACCCTGAGCGCCTTCATACAGAGACACCCAGCTTTAAAGTTTTCAAATGGAATATTAAATGATCTTACCATAGACCGGTTTAAAATGGACGGGTCCATCCTTCCCTATCATCACTGAAGAGAAGTATCAGTCGGAACCATCTATAATCACCACCCCCTCAAGAACCTACTCCAGGATGCAAAAGATTATGAACACAAAGTGTACAATGCGTGGCTAGAGCTATTCATTTTATAATAATGGTTCTATGTTATAGcagttaacatgttataactggtTAATAGTGAATAAGTTCATTTAACTCAACTATGGaaagaaaatgtatttgttttatcTAGGATGGGAAACTCTAAAGATTTTGTGTTCTCAGCGAAGGTAACTGTATTTACAAAAACAAAATCTGACACTTTCAATGGTTCATTGATTTTGGTTGTCTCTGATCTACAATTTGTGTCATGTTCTGAACAACACATATTTATATTTTACAGATTGTAAACAAGTTCCCTTATTGAAATTCTTAACCAGAACAGATACTTGTAAGAAAGGTCACCTGCAGTAGATGAAAAAGGAAACATTATTTCTGTAAACTTGTGCTTGTATGTATGGAGTATCGATTACATAGTTGACAAACTGTAAATAAAAGTCAAACTATT

Function

NR:

description
RNA polymerase I-specific transcription initiation factor RRN3-like

GO: NA

KEGG:

id description
K15216 RRN3, TIFIA; RNA polymerase I-specific transcription initiation factor RRN3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558503.2 True 2916 mRNA 0.48 17 50625720 50631000

Neighbor

gene id symbol gene type direction distance location
LOC110486711 asic2 coding upstream 25288 50152380 ~ 50600432 (+)
LOC110486706 LOC106601646 coding upstream 489728 50130444 ~ 50135992 (+)
LOC110486708 LOC106606819 coding upstream 502294 50114368 ~ 50123426 (+)
LOC110486704 ubtf coding upstream 511757 50091337 ~ 50113963 (+)
LOC100136769 LOC100136769 coding upstream 535064 50079281 ~ 50090662 (+)
LOC110486714 LOC106601613 coding downstream 7521 50638521 ~ 50641453 (+)
LOC110486715 LOC106601614 coding downstream 13660 50644660 ~ 50647403 (+)
LOC110486720 LOC106606512 coding downstream 24021 50655021 ~ 50658896 (+)
LOC110486718 LOC106606839 coding downstream 28213 50659213 ~ 50681790 (+)
LOC110486717 LOC108442215 coding downstream 51397 50682397 ~ 50690002 (+)
G1184308 NA non-coding upstream 11615 50613560 ~ 50614105 (+)
G1184302 NA non-coding upstream 17203 50608091 ~ 50608517 (+)
G1184298 NA non-coding upstream 22367 50602780 ~ 50603353 (+)
G1184296 NA non-coding upstream 24556 50600949 ~ 50601164 (+)
G1184178 NA non-coding upstream 206775 50417696 ~ 50418945 (+)
G1184328 NA non-coding downstream 56723 50687723 ~ 50687995 (+)
G1184329 NA non-coding downstream 62154 50693154 ~ 50693400 (+)
G1184330 NA non-coding downstream 64575 50695575 ~ 50696906 (+)
G1184326 NA non-coding downstream 76873 50707873 ~ 50708719 (+)
G1184337 NA non-coding downstream 90165 50721165 ~ 50721497 (+)
G1183875 NA other upstream 742285 49882821 ~ 49883435 (+)
G1183819 NA other upstream 790706 49832221 ~ 49835014 (+)
ndua4 ndua4 other upstream 1041158 49580324 ~ 49584562 (+)
G1182742 NA other upstream 1199497 49419570 ~ 49426223 (+)
LOC110486677 LOC106601591 other upstream 1342217 49281106 ~ 49284116 (+)
G1184435 LOC106606845 other downstream 354813 50985813 ~ 50986566 (+)
LOC110487554 LOC106601638 other downstream 753172 51384172 ~ 51394113 (+)
G1185436 NA other downstream 814907 51445907 ~ 51446557 (+)
G1185521 NA other downstream 996682 51627682 ~ 51628676 (+)
G1185527 NA other downstream 1020613 51651613 ~ 51653770 (+)

Expression


Co-expression Network