LOC110486716 (LOC106601616)


Basic Information

Item Value
gene id LOC110486716
gene name LOC106601616
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 50647434 ~ 50653284 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558507.2
AAAGGGTATCTGTCTCCTGTGCCACAGGTTGACACTGGGCTCAGGTACTGTAACACGAGACTGAAGTGAACCATGTGACCATAGGGGCGACGTGAAGAGGGAATTTAAAAAACGGTTTTACATAGTTAAATCTATACAGGTAGTCTACGGTGATATATATCAAAATAAACCCATTCAGCCAGTAGAACGGCTTTGCGATCGGATTTAGTTTACAGATTATTTTTTCAGACGTTGTTGGGAAAGGTTTAATCATAAACACGTCCTGACATATGATCCAGTTTCGGTTCACCAACTCACTCGTTTAGGTGAGGCGGCGGAAGCGAGACGTTGTTTTTTTTCCCGCAAGGAGTTGGATTGATCCCCGTTGCCTAAAACAGATATCAACTTTATTCGGTGAAACGAGCGGCCCTGGAGACTGACACCGGTGTGCTTGTCTGCTGAGCACTACTCCTGATGATATGGCCCCGACCTGATGTCCAGGCGTCCCCTTGCTGATGGTCTACCCTCTTTAGAACCCATTGGTTTGAATGGAGATGGCACTGCTCCCAGACATCGCGGCCTGGCCTGGTCTCCTGGCTGGGAGTGTCCTACTCCTGGTTTTGGGGAGTAATCCTTCCTGGGTTGTGGGGGACAACACAACTAATAGTCTACCCTCTAACACAACTGCCCCAGAACCCAACATTGCAGCTATTGTGGCCCCGACTGTTATACTGGGGCTGCTGGCCATAGCAGCTGCTGTGCTAGTGTGGCTTTTCTGCGTGGTGAGGAAGAAGAGGCAGACGGAGGGGACGTACCGGCCCAGTGCTGAGGAGCAGACGGGGGCCAGCAGTGTTGAGACACCAGACGCACTCAAACTGCCCAAGGAGGAAAGACTCATCTGAGCCTAGTCTCTCAGAAGTCTCTCAACACCTGTCCTGTACATCCAAGCAACAGCTAAATCCTGATGACTGTAGAAGCTCCACCTAAAGAGCTGATGATTACCTAGATATTAGAGGGTCATGACACAATGTTGACAGATACAGGATGGGACAAGAGGTACACAGCACCTAGCCCTGGAAGAGGAGGGCCCAGGCACTGTGTACTGTACGTACTGCAAGCACATGGACTAGTGCTAGTACAGGACCTGGACACAGACGTTGGGATAGCTACAGCAAATACCACAGCCTGTAACTAGAACAACTAGAACTAAGGTTCATGGGGCTCTGACTGCTTTCTCTATGGTGTGTTATTTAATAGCACTGGAATATTTGAATGGGATAGACATGTACACAATCATTCAAATGGTCATACTGGAAGAGGAAACAAACCTTCACCTGCACTAGATGGAAGAGGACCAGTATTCAGTCCCTGCTCATACTCGTCTTTGGTAAATACATTTCAGTCTGAGTATTTCAGTTATCTGTCTAGGCAATTTGTCTCTCTCAACAGCTACAAAAAGGCTGGATACAGTCTTAACTGCTATAATCGTAAGCAGACTGCTGTTACCTGTGCTACCTTGATACATGTAAAAAATTATATTGGAATGTAATGTATATGTTCGTATAAATGCCTTATAGATTACTTAAATTTATAGCGTGCAATAATGTTTGTTTAACCACTATTGATTGTCAGAAAAGCATTTCATTGTCTAGATTTTTCACTGATTACTTACCTCAATTACATGTCtcactactgaatcagtcctgtATCAGTCCTGTATACAGCTTTACAGATAATGACACGGTAAGCTAATATTATCTGGAAAACATTTCTCCCAGTGGGATATTCTGTTTGCGGATACTGTGTGCAGAACAAATAATTATGTCATTATTAATAATATTTAAGCACAAAATTAATGATTGTTTACATTTGAATAATTGTATTGAAGTATTTCAGAATTGTTACATTAATTTAACATTGGCTGAAATGTGATACTACATTAGATCATATCTTCTATGTGTGTTCTTACCAGTACGCTGTTTGTATTTTGAAAAGCCTATGATGGGGTTCAATTCTCATCATGTAGAGTTGTTATACAATGTCGTGACATATTTATCTTTTGCAGCCTACATTTTAAATAAATACCAATAGTTATTTTTAGAATTGGCCACCTCAGTAGATTTTATTTGCATAATCAGTGCTGGACTTTGATCAGATGATGTCAAgacttgcttctctctctctctcttgtgaaAACACAACCAGACTTCTATGAGGAATTAACGAGAGGGCAAAAGTTTAAGACAGAGCATCGTATAAGCTGACATCATGTATCAGACATCCCTAAAATGGTGAGTGTGAAGTGTATGAGAAATAACGCACTTGCTCAGCATGCAGACCTTACTAGTCAGCTTTCGGTGAAGCTGTGATTGACAAAATAGCTTCAGTCAGAATTATTAGCCAGTGGCAACTGACTGCAGGAGCTGGGAAGTGATGACTGCTGAAAACAATGAATCCAAGTCTTTAACGGTCACTATACGTCAGTCTCATTTCTCCTGTTGTTACGTTCTAGGAATGCATTCCAATGCAGTTTATTGCTACTAACTCATTGGCATGAACCCATAGTGGGCAGTGCAGTTTGTCTTCAGCCTATAGTTAATGCTCCCTCACAAACCCAGTTTCCAACTGTGGTTGGCCTTTTCTGGTTTGTAAATCTGCTTTTACCTTTGACATTTTGGGCTCATAGCTTCAAAATCATATAATTTACAGTATGTGAACATACTGTAATTGTACATGCTAACTTTAACCTAGTGTGTCATTTCAATTTCATGTTGTACAGTAATCAAGTCTATATAAGACCATATTAATTATT
>XM_021558508.2
AAAGGGTATCTGTCTCCTGTGCCACAGGTTGACACTGGGCTCAGGTACTGTAACACGAGACTGAAGTGAACCATGTGACCATAGGGGCGACGTGAAGAGGGAATTTAAAAAACGGTTTTACATAGTTAAATCTATACAGGTAGTCTACGGTGATATATATCAAAATAAACCCATTCAGCCAGTAGAACGGCTTTGCGATCGGATTTAGTTTACAGATTATTTTTTCAGACGTTGTTGGGAAAGGTTTAATCATAAACACGTCCTGACATATGATCCAGTTTCGGTTCACCAACTCACTCGTTTAGGTGAGGCGGCGGAAGCGAGACGTTGTTTTTTTTCCCGCAAGGAGTTGGATTGATCCCCGTTGCCTAAAACAGATATCAACTTTATTCGGTGAAACGGTGTGTAAAATGATCTGTAcagAGCGGCCCTGGAGACTGACACCGGTGTGCTTGTCTGCTGAGCACTACTCCTGATGATATGGCCCCGACCTGATGTCCAGGCGTCCCCTTGCTGATGGTCTACCCTCTTTAGAACCCATTGGTTTGAATGGAGATGGCACTGCTCCCAGACATCGCGGCCTGGCCTGGTCTCCTGGCTGGGAGTGTCCTACTCCTGGTTTTGGGGAGTAATCCTTCCTGGGTTGTGGGGGACAACACAACTAATAGTCTACCCTCTAACACAACTGCCCCAGAACCCAACATTGCAGCTATTGTGGCCCCGACTGTTATACTGGGGCTGCTGGCCATAGCAGCTGCTGTGCTAGTGTGGCTTTTCTGCGTGGTGAGGAAGAAGAGGCAGACGGAGGGGACGTACCGGCCCAGTGCTGAGGAGCAGACGGGGGCCAGCAGTGTTGAGACACCAGACGCACTCAAACTGCCCAAGGAGGAAAGACTCATCTGAGCCTAGTCTCTCAGAAGTCTCTCAACACCTGTCCTGTACATCCAAGCAACAGCTAAATCCTGATGACTGTAGAAGCTCCACCTAAAGAGCTGATGATTACCTAGATATTAGAGGGTCATGACACAATGTTGACAGATACAGGATGGGACAAGAGGTACACAGCACCTAGCCCTGGAAGAGGAGGGCCCAGGCACTGTGTACTGTACGTACTGCAAGCACATGGACTAGTGCTAGTACAGGACCTGGACACAGACGTTGGGATAGCTACAGCAAATACCACAGCCTGTAACTAGAACAACTAGAACTAAGGTTCATGGGGCTCTGACTGCTTTCTCTATGGTGTGTTATTTAATAGCACTGGAATATTTGAATGGGATAGACATGTACACAATCATTCAAATGGTCATACTGGAAGAGGAAACAAACCTTCACCTGCACTAGATGGAAGAGGACCAGTATTCAGTCCCTGCTCATACTCGTCTTTGGTAAATACATTTCAGTCTGAGTATTTCAGTTATCTGTCTAGGCAATTTGTCTCTCTCAACAGCTACAAAAAGGCTGGATACAGTCTTAACTGCTATAATCGTAAGCAGACTGCTGTTACCTGTGCTACCTTGATACATGTAAAAAATTATATTGGAATGTAATGTATATGTTCGTATAAATGCCTTATAGATTACTTAAATTTATAGCGTGCAATAATGTTTGTTTAACCACTATTGATTGTCAGAAAAGCATTTCATTGTCTAGATTTTTCACTGATTACTTACCTCAATTACATGTCtcactactgaatcagtcctgtATCAGTCCTGTATACAGCTTTACAGATAATGACACGGTAAGCTAATATTATCTGGAAAACATTTCTCCCAGTGGGATATTCTGTTTGCGGATACTGTGTGCAGAACAAATAATTATGTCATTATTAATAATATTTAAGCACAAAATTAATGATTGTTTACATTTGAATAATTGTATTGAAGTATTTCAGAATTGTTACATTAATTTAACATTGGCTGAAATGTGATACTACATTAGATCATATCTTCTATGTGTGTTCTTACCAGTACGCTGTTTGTATTTTGAAAAGCCTATGATGGGGTTCAATTCTCATCATGTAGAGTTGTTATACAATGTCGTGACATATTTATCTTTTGCAGCCTACATTTTAAATAAATACCAATAGTTATTTTTAGAATTGGCCACCTCAGTAGATTTTATTTGCATAATCAGTGCTGGACTTTGATCAGATGATGTCAAgacttgcttctctctctctctcttgtgaaAACACAACCAGACTTCTATGAGGAATTAACGAGAGGGCAAAAGTTTAAGACAGAGCATCGTATAAGCTGACATCATGTATCAGACATCCCTAAAATGGTGAGTGTGAAGTGTATGAGAAATAACGCACTTGCTCAGCATGCAGACCTTACTAGTCAGCTTTCGGTGAAGCTGTGATTGACAAAATAGCTTCAGTCAGAATTATTAGCCAGTGGCAACTGACTGCAGGAGCTGGGAAGTGATGACTGCTGAAAACAATGAATCCAAGTCTTTAACGGTCACTATACGTCAGTCTCATTTCTCCTGTTGTTACGTTCTAGGAATGCATTCCAATGCAGTTTATTGCTACTAACTCATTGGCATGAACCCATAGTGGGCAGTGCAGTTTGTCTTCAGCCTATAGTTAATGCTCCCTCACAAACCCAGTTTCCAACTGTGGTTGGCCTTTTCTGGTTTGTAAATCTGCTTTTACCTTTGACATTTTGGGCTCATAGCTTCAAAATCATATAATTTACAGTATGTGAACATACTGTAATTGTACATGCTAACTTTAACCTAGTGTGTCATTTCAATTTCATGTTGTACAGTAATCAAGTCTATATAAGACCATATTAATTATT

Function

NR:

description
protein crumbs homolog 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558507.2 False 2791 mRNA 0.42 4 50647434 50653284
XM_021558508.2 True 2813 mRNA 0.42 4 50647434 50653284

Neighbor

gene id symbol gene type direction distance location
LOC110486713 NA coding downstream 13744 50631005 ~ 50633690 (-)
LOC110486707 asb16 coding downstream 517132 50127555 ~ 50130302 (-)
LOC110486710 LOC106601657 coding downstream 520233 50123190 ~ 50127201 (-)
si:ch211-214j24.15 LOC106606868 coding downstream 580036 50059034 ~ 50067398 (-)
LOC110486699 LOC106601618 coding downstream 607101 49970722 ~ 50040333 (-)
LOC110486719 LOC105013088 coding upstream 36898 50690182 ~ 50697090 (-)
LOC118938085 NA coding upstream 66528 50719812 ~ 50730095 (-)
LOC110485208 LOC106606837 coding upstream 78813 50732097 ~ 50824433 (-)
LOC110486728 qtrt1 coding upstream 174111 50827395 ~ 50832708 (-)
LOC118938315 NA coding upstream 214044 50867328 ~ 50868744 (-)
G1184965 NA non-coding downstream 38630 50608605 ~ 50608804 (-)
G1184964 NA non-coding downstream 39111 50607969 ~ 50608323 (-)
G1184963 NA non-coding downstream 39538 50607620 ~ 50607896 (-)
G1184958 NA non-coding downstream 44353 50602844 ~ 50603081 (-)
G1184896 NA non-coding downstream 151969 50494974 ~ 50495465 (-)
G1184995 NA non-coding upstream 25255 50678539 ~ 50681764 (-)
G1185010 NA non-coding upstream 40538 50693822 ~ 50694029 (-)
G1184979 NA non-coding upstream 50195 50703479 ~ 50703982 (-)
G1184978 NA non-coding upstream 54583 50707867 ~ 50708718 (-)
G1185012 NA non-coding upstream 55608 50708892 ~ 50709127 (-)
G1184986 NA other downstream 18895 50626647 ~ 50628539 (-)
LOC110486698 LOC106601594 other downstream 811102 49831067 ~ 49853671 (-)
G1183706 NA other downstream 958978 49685338 ~ 49688456 (-)
LOC118938314 NA other downstream 1103158 49537199 ~ 49544276 (-)
LOC110486687 LOC106601611 other downstream 1143424 49486817 ~ 49504819 (-)
G1185046 NA other upstream 126981 50780265 ~ 50781858 (-)
G1186080 NA other upstream 668516 51321800 ~ 51323931 (-)
G1186075 NA other upstream 699025 51352309 ~ 51373954 (-)
G1186154 NA other upstream 836493 51489777 ~ 51490241 (-)

Expression


Co-expression Network