LOC110486720 (LOC106606512)


Basic Information

Item Value
gene id LOC110486720
gene name LOC106606512
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 50655021 ~ 50658896 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558517.2
TTCCTTCCGACATTTTGGTGGCTTTGTGAAATTTACTGGCGGGTGGTTTTTGAAATAGTTGTTTTGAACAAAACTAGTCAGAGGAATATTCCAGATAACagtaaatacaaaaaaatgtatggcactttctttaaaaaatacaatttctgtTGAAATGATTGGCTCATATAGCAGACTAGCATAGCAATAAGATATATATCTACCTAGTAATTTCAAAATTACACTAAAGCGTAGCTGTCAACCTGTAAAATCAGATGCATTTTTAAATGCAAAAAACGAATTTCTTCAGTGATAGAATGTATCTTTGTGTACGCTGCGTGAGAACATTGCTTGCTATTTGCTACATTGTTGAGGCCTGAAACCTTCCCCGGGAAAATTTGCTAACCACTCTCAGCCAGGGTGTCTGTCACTCGCAGCAGGAGCCGCAATAATGGCGAAGGTTCAAGTACTAAATGTCGCTGTCCTCGATAACCCGAGTCGATTCGGAAACCCATTTCAATTCGAAATAACATTTGAGTGCATGGAAGACCTGCCAGAAGATCTTGAGTGGAAGATCATATATGTGGGTTCAGCAGAGAGTGAAGAGTATGACCAGACCCTTGACTCTGTTCTGGTTGGCCCAGTACCAGCCGGGAGGCACATGTTTGTGTTCCAGGcggatgccccaaacacgggTCTGATTCCAGAAAGTGATGCTGTCGGCGTAACTGTGGCGCTAATCACCTGTACATACCGCGGACAGGAGTTCATTCGTATCGGGTACTACGTCAACAACGAGTACACCGACCCAGAGCTGCGGGAAAACCCACCCATAAAACCTGACTATGGACAGCTCCAGAGAAATATTTTGGCTTCAAACCCACGTGTAACAAGATTCCATATCAACTGGGAAGGGTGTGCAGAAAGGATGGAAGACTCAGAGAATGTGGATCCTGCCCCCAACTCTATGCTGCCCCCATCTTGCCTCCCGGGCAAGGCCCCACCCATAGGGTTGCTACCTGACAACTCTATGGACTGCTTGTAGAGGgaaacatacatatacacataatcTTCGATCAACCCAAGCACTATAAGCAGAAGAATGGACATGGACATTCTGACTTGGATGTACAGCCAGCTTTGCCTTACAGCTGCCTTTATTTCCCAGAAACTGTCAACAACACACTCCCACCTTGGACTACAGTGTCTTGCAACCAAGACAATCTTTCTGGAGTAATCTTTATTATCTATTGGAAGTTTTGCACTTTCGTGTATATAACATggtgaaaaaaagttgtaaaacTAATTAATCCCTTCATTTTTAATACTATCAACAGGGCAACAGCTGAAGTATCCTAGTTTCCATAGATGGTTAGCAGCTAATTGGCAGAAATACTGATTCACACCAACTAGTCAGCTGTTAATTATGTGATGTAAATACCAACAGAGGATTATGACACTAGTGAAGCAAAATGGAGGAAGAAATGACTCAAGTTGCAGGAAGGAAAATAATGGTGGTATTTGTTTTGTACTTTCTGAGCCATTGTGTTTCAGTGGTAATGGTCCTTATAGCATTTGAGTTACACTTTCCCTGTTGGTGTTTTGGGAGACTTTTGGATGGGTGGGGGTGGGTGGGGTGCTAATAATGGTATGTACATATGTTTATTTTCCTGTGTGCCATTTTTTTTTGAAATAAATATCTTTTTGTTTTGTAACGTGTGTGATTGTCCCTGACAAGCTTTGAGACATGATGAAAATGGCAGATGTTGGAACTCTAGGAGAATCACCTTTTTTCAACTTTGAAAATAATGAGTGGGGCTTCCTCGACTTTTTGTTACATTCATATATATCTGTAGTGAAGTATGCTCACCTGTAGTGCACATTTTGAAATTGGTAGCCTGGCTTGCTTGTTGCCATGCAATTTGAATTACAGCTGTGTTCAAGACAAAATTGTGAAAATGTTAACATTAACAAATCTCCCCTTTTCACTGAATCATGTTCTCTTGTCATTGACTTCAGAGTTCACTGAATGTAATTGTAATCCTTTAGTGAACGGTTTGCTGAAAAAACATGCATGTATGGACGTTTGCAATTATGGTCAGCTATGAAATGTATGGCTGTTATTTTCTGCATAGGAGATAATGGCAAAAGCGGTATGTGAATGTGGGCTGTCTGGTGGTAAAATCTGATATCTAGGACGATTCATGCAATATGAAATATAACTAAATGACACTGGTTTCCTTACAAGTCACactaa

Function

NR:

description
PREDICTED: histone chaperone asf1b-B

GO:

id name namespace
GO:0006333 chromatin assembly or disassembly biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K10753 ASF1; histone chaperone ASF1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558517.2 True 2236 mRNA 0.41 4 50655021 50658896

Neighbor

gene id symbol gene type direction distance location
LOC110486715 LOC106601614 coding upstream 7618 50644660 ~ 50647403 (+)
LOC110486714 LOC106601613 coding upstream 13568 50638521 ~ 50641453 (+)
LOC110486712 LOC106600671 coding upstream 24021 50625720 ~ 50631000 (+)
LOC110486711 asic2 coding upstream 54589 50152380 ~ 50600432 (+)
LOC110486706 LOC106601646 coding upstream 519029 50130444 ~ 50135992 (+)
LOC110486718 LOC106606839 coding downstream 317 50659213 ~ 50681790 (+)
LOC110486717 LOC108442215 coding downstream 23501 50682397 ~ 50690002 (+)
LOC110486721 dnjb1 coding downstream 40167 50699063 ~ 50704298 (+)
LOC110486722 LOC106606841 coding downstream 50716 50709612 ~ 50714443 (+)
LOC110486723 LOC106601660 coding downstream 56481 50715377 ~ 50719819 (+)
G1184308 NA non-coding upstream 40916 50613560 ~ 50614105 (+)
G1184302 NA non-coding upstream 46504 50608091 ~ 50608517 (+)
G1184298 NA non-coding upstream 51668 50602780 ~ 50603353 (+)
G1184296 NA non-coding upstream 53857 50600949 ~ 50601164 (+)
G1184178 NA non-coding upstream 236076 50417696 ~ 50418945 (+)
G1184328 NA non-coding downstream 28827 50687723 ~ 50687995 (+)
G1184329 NA non-coding downstream 34258 50693154 ~ 50693400 (+)
G1184330 NA non-coding downstream 36679 50695575 ~ 50696906 (+)
G1184326 NA non-coding downstream 48977 50707873 ~ 50708719 (+)
G1184337 NA non-coding downstream 62269 50721165 ~ 50721497 (+)
G1183875 NA other upstream 771586 49882821 ~ 49883435 (+)
G1183819 NA other upstream 820007 49832221 ~ 49835014 (+)
ndua4 ndua4 other upstream 1070459 49580324 ~ 49584562 (+)
G1182742 NA other upstream 1228798 49419570 ~ 49426223 (+)
LOC110486677 LOC106601591 other upstream 1371518 49281106 ~ 49284116 (+)
G1184435 LOC106606845 other downstream 326917 50985813 ~ 50986566 (+)
LOC110487554 LOC106601638 other downstream 725276 51384172 ~ 51394113 (+)
G1185436 NA other downstream 787011 51445907 ~ 51446557 (+)
G1185521 NA other downstream 968786 51627682 ~ 51628676 (+)
G1185527 NA other downstream 992717 51651613 ~ 51653770 (+)

Expression


Co-expression Network