LOC110486717 (LOC108442215)


Basic Information

Item Value
gene id LOC110486717
gene name LOC108442215
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 50682397 ~ 50690002 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558511.2
AGCTTGATTCTATCTCCAGTGGGTCACCTTAAAAGCGCACAACAACGCAAGCGTACAGCGAGGTTTCAATTTTTTTCTCTAAAGCCGGACTCGGGCCGCGGATCGCAACAAGGTTGACGCACTGAGGCAAAAACGAACGAACGACCCCAACCAGGAGAATGTCTGAACCCATGTACCGCGATTGGATTTTGGACACTATTGACTCACTGCGGTCGCGAAAAGCCAGACCAGACCTTGAAAGAATTTGTCGAATGGTCCGGAGACGACATGGATCAGCGCCAGAACAAACCAGCGAGGAACTCGAGAAACTGATCCAAGAGCAAACAGTCTTGAAAGTTAACTATAAGGGCTCGATTTCCTATCGAAATGCTGCCAAAGTAGTCAGAAGAAGCAGGAAAAAGGATGATCACACGACCAAAAGAACTGCCGTGGAAGAAGCTAACCACTCTGATTTGAGCAACGGAGACAGCGCGCTCGGTCCCCTTGACCAGGATGAGACCGAGCATTTGGAGAATGAGCTGCCAGTGTCAATGGAGACAGACAGCACcatggaagaggaggaagaacagGAGGGGGCTGATGAAGATGGCCATGAgggctcctctccctctcctggggGTGAGGATGCTGTGCAGGGGAGGTCTGGTGCTGCCCCCCCCTACTCTGCCCCCTGCTCCCCCAGCGGCTCTCGCCCTGGCCACAGCCCTGTGTCTGACCGCCCCTCTACCTGCAAGACCAGTAAGAGGTCCAGCCCTCTGTCACCCTCTAGTCCCCTGGCCCTCAGGCagaatgactgtgtgtgtgactctgccTTCTGCCCTGCTGACCATGGACCCCCAGGGATGCAGAGAAACACAGGAACTGaggatggggtgagGATGGAGGAGAGTGGCCTCACTTCTGACCAACTGGTTCCTGACTGTGTGGATGAGACCATGAAGGGTTCTGACAGACAGCCTAAGACGTTGTCTTTTCCCTCTGACGACTGTGCTAAATACAAGAAGGGGATGGACGTGGCCTCTTACGTGATGTCTCAAGACGATGTCAAGAACGATGTGAAAAACAGAGAAATCTCTGTGAAGAAGGAGACGCAGAGGCAGAACCTATTGCTGTGGAGCGTGGCGGACGTGGCCACCTACATCTCTGCTGCAGGCTTTCCAGAGCAGGCTGTAGCTTTCAGAACACAGGAAATTGATGGAAAGTCCTTGCTCCTGATGCAGCGCAGTGACGTGTTAACTGGCCTTTCCATCAGACTTGGGCCCGCCCTAAAGATCTACGAGCGCCACGTGAAGATGCTGCAGAGGACCCACTTCCTGGATGAGGAGGATGATCTCTGACCATGGTTGGGGGGAACAGAACAACACACTCCTCTGAGGAGCAGATGtattcatacagtatacacacatacTGTGTTCACTGGATCTCTAGAACCTTCTGTAACCATTCAAGGAGGTGTGGGGAAAAGGACACCGTGGTCATGACTTGGGCCTTGACAGTGATTATCAACATGTGTACGTGGGCTTCCATTCCACCTCTCTGTGGTACTGCTGTCACCTGACCCATTCTGGTGGTATTGCTTTTATAGGACCCCTCTCTAAACTCATATAGGAATGTTAGGATCCTGCCTAATGACGCTATAGAAGTCAAGTGGAGGTCTGCCTATTCTGTAAGGGGAGGTCTGCCTGTTCTCTAAGGGGAGGTCTGCCTGTTCTCTAAGGGGAGGTCTGCCTGTTCTCTAAGGGGAGGTCTGCCTGTTCTCTAAGGGGAGGTCTGCCTGTTCTCTAAGGGGAGGTCTGCCTGTTCTCTAAGGGGAGGTCTGCCTGTTCTCTAAGGGGAGGTCTGCCTGTTCTCTAAGGGGAGGTCTGCCTGTTCTCTAAGGGGAGGTCTGCCTGTTCTCTAAGGGGAGGTCTGCCTGTTCTCTAAGGGGAGGTCTGCCTGTTCTGTAAGGGGTGGGTCAGTGAGTGCAGCCAGTGAGAGACTTTCTCTGGATTCCTCAGACTCTACACTTGGCTACCACTGGAGCCTCCTTTAAAAGACTGGTTTCTGTGCTCCCTGAGTCAGTTCCACAAGAAAATAATAACATGTATACTTGGAATATCTGTTCCAGCAAATATGGTTCTAGCATTTCTTCAATGTTTACTCAGACAGTATTTTTTTAAAGACATGTCATATGGTACCCTCCATTTATCTAGAAACTTAACGTTGTTTTTCTTTTATGATGACAATGTGAACTGATTTAATTTGAGAATGTACAGTATGAATTTGTTGATTCATCAAAGGTCAGTGATGTTGTCAATCTCTCATTATACCAGGAAATGGAGCTTAGTCTCCAGATGTTCTCATGGCTGCACCAGTACTGACCTAGGTTTTATTATTGTTATCTGTTTCACTAACATTTAGAAATAGCAATATGTCGTACCTGCTAAACTAAGGCAACATAATAGGTTCTTTGTATGGTTGCCTTCTGCATTCCTCTTCCCTTAATTTATGTTCACGTAATTTCTAAACATTTTAGATTAATCTAATTTCATCTACTGTGGATGAAGCTAGATTTCATCTACAAAATTAAAACAGTTTGAAGCAGAATTCTAGTTGAAATGGGCTGGCAGACCAGAACCAACGTAGCTCAAGGCCCCAATGTTTCTTCCTGCTTCAGTTTGAGGGGAGAGAAACAACTGAATTATGGTCTTTTTTTAAGGGAAAATTATCCAACCAAAAAATTAACTTCATAACTTTAGGAAGTGTCATTGTAGCACTAATATGTTTTCTTTGTTTACAACCTCAACACAGCAACACAATTCCCCACGACATGGTAGACATCTTGATCAAATTCAACATTGTTGTTATCTGAGAGGATTACAATGAGGTCTCTTAATTTTGCCTTGTGGCTTCTGCTTTTGAAACAACGTCACATTCCATATTTCCATCTGTTACGTGTTTGATGTCACACTGTTAATTGCAATGTTGGCCCTGTTTCCAGGGGGGGAAATGAAGTTATTGTCTTTTCCACTCTTGTAGTGTGATATGTATTA
>XM_021558510.2
GCTTGATTCTATCTCCAGTGGGTCACCTTAAAAGCGCACAACAACGCAAGCGTACAGCGAGGTTTCAATTTTTTTCTCTAAAGCCGGACTCGGGCCGCGGATCGCAACAAGGTTGACGCACTGAGGCAAAAACGAACGAACGACCCCAACCAGGAGAATGTCTGAACCCATGTACCGCGATTGGATTTTGGACACTATTGACTCACTGCGGTCGCGAAAAGCCAGACCAGACCTTGAAAGAATTTGTCGAATGGTCCGGAGACGACATGGATCAGCGCCAGAACAAACCAGCGAGGAACTCGAGAAACTGATCCAAGAGCAAACAGTCTTGAAAGTTAACTATAAGGGCTCGATTTCCTATCGAAATGCTGCCAAAGTAGTCAGAAGAAGCAGGAAAAAGGATGATCACACGACCAAAAGAACTGCCGTGGAAGAAGCTAACCACTCTGATTTGAGCAACGGAGACAGCGCGCTCGGTCCCCTTGACCAGGATGAGACCGAGCATTTGGAGAATGAGCTGCCAGTGTCAATGGAGACAGACAGCACcatggaagaggaggaagaacagGAGGGGGCTGATGAAGATGGCCATGAgggctcctctccctctcctggggGTGAGGATGCTGTGCAGGGGAGGTCTGGTGCTGCCCCCCCCTACTCTGCCCCCTGCTCCCCCAGCGGCTCTCGCCCTGGCCACAGCCCTGTGTCTGACCGCCCCTCTACCTGCAAGACCAGTAAGAGGTCCAGCCCTCTGTCACCCTCTAGTCCCCTGGCCCTCAGGCagaatgactgtgtgtgtgactctgccTTCTGCCCTGCTGACCATGGACCCCCAGGGATGCAGAGAAACACAGGAACTGGGGCTTTAAAGACGATAGTACAGCCATCGGGGACCTGTCCCTGGGTTCAGAAGAGcttggtgaagagagagagagaggatggggtgagGATGGAGGAGAGTGGCCTCACTTCTGACCAACTGGTTCCTGACTGTGTGGATGAGACCATGAAGGGTTCTGACAGACAGCCTAAGACGTTGTCTTTTCCCTCTGACGACTGTGCTAAATACAAGAAGGGGATGGACGTGGCCTCTTACGTGATGTCTCAAGACGATGTCAAGAACGATGTGAAAAACAGAGAAATCTCTGTGAAGAAGGAGACGCAGAGGCAGAACCTATTGCTGTGGAGCGTGGCGGACGTGGCCACCTACATCTCTGCTGCAGGCTTTCCAGAGCAGGCTGTAGCTTTCAGAACACAGGAAATTGATGGAAAGTCCTTGCTCCTGATGCAGCGCAGTGACGTGTTAACTGGCCTTTCCATCAGACTTGGGCCCGCCCTAAAGATCTACGAGCGCCACGTGAAGATGCTGCAGAGGACCCACTTCCTGGATGAGGAGGATGATCTCTGACCATGGTTGGGGGGAACAGAACAACACACTCCTCTGAGGAGCAGATGtattcatacagtatacacacatacTGTGTTCACTGGATCTCTAGAACCTTCTGTAACCATTCAAGGAGGTGTGGGGAAAAGGACACCGTGGTCATGACTTGGGCCTTGACAGTGATTATCAACATGTGTACGTGGGCTTCCATTCCACCTCTCTGTGGTACTGCTGTCACCTGACCCATTCTGGTGGTATTGCTTTTATAGGACCCCTCTCTAAACTCATATAGGAATGTTAGGATCCTGCCTAATGACGCTATAGAAGTCAAGTGGAGGTCTGCCTATTCTGTAAGGGGAGGTCTGCCTGTTCTCTAAGGGGAGGTCTGCCTGTTCTCTAAGGGGAGGTCTGCCTGTTCTCTAAGGGGAGGTCTGCCTGTTCTCTAAGGGGAGGTCTGCCTGTTCTCTAAGGGGAGGTCTGCCTGTTCTCTAAGGGGAGGTCTGCCTGTTCTCTAAGGGGAGGTCTGCCTGTTCTCTAAGGGGAGGTCTGCCTGTTCTCTAAGGGGAGGTCTGCCTGTTCTCTAAGGGGAGGTCTGCCTGTTCTCTAAGGGGAGGTCTGCCTGTTCTGTAAGGGGTGGGTCAGTGAGTGCAGCCAGTGAGAGACTTTCTCTGGATTCCTCAGACTCTACACTTGGCTACCACTGGAGCCTCCTTTAAAAGACTGGTTTCTGTGCTCCCTGAGTCAGTTCCACAAGAAAATAATAACATGTATACTTGGAATATCTGTTCCAGCAAATATGGTTCTAGCATTTCTTCAATGTTTACTCAGACAGTATTTTTTTAAAGACATGTCATATGGTACCCTCCATTTATCTAGAAACTTAACGTTGTTTTTCTTTTATGATGACAATGTGAACTGATTTAATTTGAGAATGTACAGTATGAATTTGTTGATTCATCAAAGGTCAGTGATGTTGTCAATCTCTCATTATACCAGGAAATGGAGCTTAGTCTCCAGATGTTCTCATGGCTGCACCAGTACTGACCTAGGTTTTATTATTGTTATCTGTTTCACTAACATTTAGAAATAGCAATATGTCGTACCTGCTAAACTAAGGCAACATAATAGGTTCTTTGTATGGTTGCCTTCTGCATTCCTCTTCCCTTAATTTATGTTCACGTAATTTCTAAACATTTTAGATTAATCTAATTTCATCTACTGTGGATGAAGCTAGATTTCATCTACAAAATTAAAACAGTTTGAAGCAGAATTCTAGTTGAAATGGGCTGGCAGACCAGAACCAACGTAGCTCAAGGCCCCAATGTTTCTTCCTGCTTCAGTTTGAGGGGAGAGAAACAACTGAATTATGGTCTTTTTTTAAGGGAAAATTATCCAACCAAAAAATTAACTTCATAACTTTAGGAAGTGTCATTGTAGCACTAATATGTTTTCTTTGTTTACAACCTCAACACAGCAACACAATTCCCCACGACATGGTAGACATCTTGATCAAATTCAACATTGTTGTTATCTGAGAGGATTACAATGAGGTCTCTTAATTTTGCCTTGTGGCTTCTGCTTTTGAAACAACGTCACATTCCATATTTCCATCTGTTACGTGTTTGATGTCACACTGTTAATTGCAATGTTGGCCCTGTTTCCAGGGGGGGAAATGAAGTTATTGTCTTTTCCACTCTTGTAGTGTGATATGTATTA
>XR_005035583.1
GCTTGATTCTATCTCCAGTGGGTCACCTTAAAAGCGCACAACAACGCAAGCGTACAGCGAGGTTTCAATTTTTTTCTCTAAAGCCGGACTCGGGCCGCGGATCGCAACAAGGTTGACGCACTGAGGCAAAAACGAACGAACGACCCCAACCAGGAGAATGTCTGAACCCATGTACCGCGATTGGATTTTGGACACTATTGACTCACTGCGGTCGCGAAAAGCCAGACCAGACCTTGAAAGAATTTGTCGAATGGTCCGGAGACGACATGGATCAGCGCCAGAACAAACCAGCGAGGAACTCGAGAAACTGATCCAAGAGCAAACAGTCTTGAAAGTTAACTATAAGGGCTCGATTTCCTATCGAAATGCTGCCAAAGTAGTCAGAAGAAGCAGGAAAAAGGATGATCACACGACCAAAAGAACTGCCGTGGAAGAAGCTAACCACTCTGATTTGAGCAACGGAGACAGCGCGCTCGGTCCCCTTGACCAGGATGAGACCGAGCATTTGGAGAATGAGCTGCCAGTGTCAATGGAGACAGACAGCACcatggaagaggaggaagaacagGAGGGGGCTGATGAAGATGGCCATGAgggctcctctccctctcctggggGTGAGGATGCTGTGCAGGGGAGGTCTGGTGCTGCCCCCCCCTACTCTGCCCCCTGCTCCCCCAGCGGCTCTCGCCCTGGCCACAGCCCTGTGTCTGACCGCCCCTCTACCTGCAAGACCAGTAAGAGGTCCAGCCCTCTGTCACCCTCTAGTCCCCTGGCCCTCAGGCagaatgactgtgtgtgtgactctgccTTCTGCCCTGCTGACCATGGACCCCCAGGGATGCAGAGAAACACAGGAACTGGGGCTTTAAAGACGATAGTACAGCCATCGGGGACCTGTCCCTGGGTTCAGAAGAGcttggtgaagagagagagagaggatggggtgagGATGGAGGAGAGTGGCCTCACTTCTGACCAACTGGTTCCTGACTGTGTGGATGAGACCATGAAGGGTTCTGACAGACAGCCTAAGACGTTGTCTTTTCCCTCTGACGACTGTGCTAAATACAAGAAGGGGATGGACGTGGCCTCTTACGTGATGTCTCAAGACGATGTCAAGAACGATGTGAAAAACAGAGAAATCTCTGTGAAGAAGGAGACGCAGAGGCAGAACCTATTGCTGTGGAGCGTGGCGGACGTGGCCACCTACATCTCTGCTGCAGGCTTTCCAGAGCAGGCTGTAGCTTTCAGAACACAGGAAATTGATGGAAAGTCCTTGCTCCTGATGCAGCGCAGTGACGTGTTAACTGGCCTTTCCATCAGACTTGGGCCCGCCCTAAAGATCTACGAGCGCCACGTGAAGATGCTGCAGAGGACCCACTTCCTGGATGAGGAGGATGATCTCTGACCATGGTTGGGGGGAACAGAACAACACACTCCTCTGAGGAGCAGATGtattcatacagtatacacacatacTGTGTTCACTGGATCTCTAGAACCTTCTGTAACCATTCAAGGAGGTGTGGGGAAAAGGACACCGTGGTCATGACTTGGGCCTTGACAGTGATTATCAACATGTGTACGTGGGCTTCCATTCCACCTCTCTGTGGTACTGCTGTCACCTGACCCATTCTGGTGGTATTGCTTTTATAGGACCCCTCTCTAAACTCATATAGGAATGTTAGGATCCTGCCTAATGACGCTATAGAAGTCAAGTGGAGGTCTGCCTATTCTGTAAGGGGAGGTCTGCCTGTTCTCTAAGGGGAGGTCTGCCTGTTCTCTAAGGGGAGGTCTGCCTGTTCTCTAAGGGGAGGTCTGCCTGTTCTCTAAGGGGAGGTCTGCCTGTTCTCTAAGGGGAGGTCTGCCTGTTCTCTAAGGGGAGGTCTGCCTGTTCTCTAAGGGGAGGTCTGCCTGTTCTCTAAGGGGAGGTCTGCCTGTTCTCTAAGGGGAGGTCTGCCTGTTCTGTAAGGGGTGGGTCAGTGAGTGCAGCCAGTGAGAGACTTTCTCTGGATTCCTCAGACTCTACACTTGGCTACCACTGGAGCCTCCTTTAAAAGACTGGTTTCTGTGCTCCCTGAGTCAGTTCCACAAGAAAATAATAACATGTATACTTGGAATATCTGTTCCAGCAAATATGGTTCTAGCATTTCTTCAATGTTTACTCAGACAGTATTTTTTTAAAGACATGTCATATGGTACCCTCCATTTATCTAGAAACTTAACGTTGTTTTTCTTTTATGATGACAATGTGAACTGATTTAATTTGAGAATGTACAGTATGAATTTGTTGATTCATCAAAGGTCAGTGATGTTGTCAATCTCTCATTATACCAGGAAATGGAGCTTAGTCTCCAGATGTTCTCATGGCTGCACCAGTACTGACCTAGGTTTTATTATTGTTATCTGTTTCACTAACATTTAGAAATAGCAATATGTCGTACCTGCTAAACTAAGGCAACATAATAGGTTCTTTGTATGGTTGCCTTCTGCATTCCTCTTCCCTTAATTTATGTTCACGTAATTTCTAAACATTTTAGATTAATCTAATTTCATCTACTGTGGATGAAGCTAGATTTCATCTACAAAATTAAAACAGTTTGAAGCAGAATTCTAGTTGAAATGGGCTGGCAGACCAGAACCAACGTAGCTCAAGGCCCCAATGTTTCTTCCTGCTTCAGTTTGAGGGGAGAGAAACAACTGAATTATGGTCTTTTTTTAAGGGAAAATTATCCAACCAAAAAATTAACTTCATAACTTTAGGAAGTGTCATTGTAGCACTAATATGTTTTCTTTGTTTACAACCTCAACACAGCAACACAATTCCCCACGACATGGTAGACATCTTGATCAAATTCAACATTGTTGTTATCTGAGAGGATTACAATGAGGTCTCTTAATTTTGCCTTGTGGCTTCTGCTTTTGAAACAACGTCACATTCCATATTTCCATCTGTTACGTGTTTGATGTCACACTGTTAATTGCAATGTTGGCCCTGTTTCCAGGGGGGGAAATGAAGTTATTGTCTTTTCCACTCTTGTAGTGTGATATGTATTA

Function

NR:

description
atherin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558511.2 False 3032 mRNA 0.47 6 50682397 50690002
XM_021558510.2 False 3106 mRNA 0.47 6 50682398 50690002
XR_005035583.1 True 3060 mRNA 0.47 7 50682398 50690002

Neighbor

gene id symbol gene type direction distance location
LOC110486718 LOC106606839 coding upstream 607 50659213 ~ 50681790 (+)
LOC110486720 LOC106606512 coding upstream 23501 50655021 ~ 50658896 (+)
LOC110486715 LOC106601614 coding upstream 34994 50644660 ~ 50647403 (+)
LOC110486714 LOC106601613 coding upstream 40944 50638521 ~ 50641453 (+)
LOC110486712 LOC106600671 coding upstream 51397 50625720 ~ 50631000 (+)
LOC110486721 dnjb1 coding downstream 9061 50699063 ~ 50704298 (+)
LOC110486722 LOC106606841 coding downstream 19610 50709612 ~ 50714443 (+)
LOC110486723 LOC106601660 coding downstream 25375 50715377 ~ 50719819 (+)
dnm2a NA coding downstream 142802 50832804 ~ 50876302 (+)
LOC110486729 light coding downstream 195727 50885729 ~ 50894479 (+)
G1184308 NA non-coding upstream 68292 50613560 ~ 50614105 (+)
G1184302 NA non-coding upstream 73880 50608091 ~ 50608517 (+)
G1184298 NA non-coding upstream 79044 50602780 ~ 50603353 (+)
G1184296 NA non-coding upstream 81233 50600949 ~ 50601164 (+)
G1184178 NA non-coding upstream 263452 50417696 ~ 50418945 (+)
G1184329 NA non-coding downstream 3152 50693154 ~ 50693400 (+)
G1184330 NA non-coding downstream 5573 50695575 ~ 50696906 (+)
G1184326 NA non-coding downstream 17871 50707873 ~ 50708719 (+)
G1184337 NA non-coding downstream 31163 50721165 ~ 50721497 (+)
G1184338 NA non-coding downstream 34608 50724610 ~ 50724837 (+)
G1183875 NA other upstream 798962 49882821 ~ 49883435 (+)
G1183819 NA other upstream 847383 49832221 ~ 49835014 (+)
ndua4 ndua4 other upstream 1097835 49580324 ~ 49584562 (+)
G1182742 NA other upstream 1256174 49419570 ~ 49426223 (+)
LOC110486677 LOC106601591 other upstream 1398894 49281106 ~ 49284116 (+)
G1184435 LOC106606845 other downstream 295811 50985813 ~ 50986566 (+)
LOC110487554 LOC106601638 other downstream 694170 51384172 ~ 51394113 (+)
G1185436 NA other downstream 755905 51445907 ~ 51446557 (+)
G1185521 NA other downstream 937680 51627682 ~ 51628676 (+)
G1185527 NA other downstream 961611 51651613 ~ 51653770 (+)

Expression


Co-expression Network