LOC110486719 (LOC105013088)


Basic Information

Item Value
gene id LOC110486719
gene name LOC105013088
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 50690182 ~ 50697090 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558516.2
TAGGGTTGTGTGTGGCTGACCAAGGTTACTGAGCTactgcagaacagagcagagcaaaTCGGTCTTCTTATATTTAGCCTTGCGACGTGCGCGCTACGGATTATGTCTTGGGCGTCTCGGGTTTCGCCTTCAGTACGTTTGTGGGTGTGGACGGGGTCCGGTAACTAGTGGGAGGCCTCTCTTCAGGTGAGGAGGTGGTAGGTTACTGACGTTTAACCCCCTCTCATTCTATGAACATCTCACaggcaacctctctctctctctttctcactttctctcccaccctcttgcTTTCTTTACCTCTTTCTCACACCCTCACACAGGAAAAGGCTGTTTATGGTGACATAGTCGTTTCCCATTCTGGAAGGCTATTTGGAGGGTACAGATAGTAAGAAAAACAGTCACAGAGGACATAGCAGTGTTAGACTACAGCTTCTAATCTGATACAAGTAGAGAACACTAACTAGGTTTTTGCAAAACATTGGAGGGACCTCATTTTAGTGCGGAGGCACATTGAGGTCGTAGTTCAAAAGGGGTCATGGATACACTGGCTTTAGAGGCGAAGGCAACTGGACAAGAAAAGAAAAGTTCAGCCCCAAGACCAAGACCTAAACCACCCAAAAAGGCCAAAAGGATTGTTTACTTTGAGGTAGAAATCGTGGATGCAAAGACAAAGGAGAAGCTACTACTCTTGGacaaaGTTGAGCCAACTTCTACTATTTTGGATATTAAGGCTTTGTTCCACAAATCAAATCCCCAGTGGTACCCAGCCAGACAGTCCTTACGCCTGGATCCTAAGGGTAAGGGTCTGAAGGATGAGGATGTCTTGCAGACACTTCCTGTTGGAACCACAGCCAGCTTCTACTTCTTTGACCTGGGGGCCCAGATCGCCTGGGGCACTGTCTTCCTATCAGAGTGTTACGGACCACTGCTCATCTACTTGATGTTCTACTTCCGCCTGCCTTTCATCTATGCCCCAAAGTATGACTTTAGCAGCAGCAAGCACTGGGTTGTACATTTGGCCTGCATGTGTCACTCCTTCCACTATGTGAAGAGAATCCTTGAGACGCTGTTCATCCACCGTATCTCCCATGGTACCATGCCACTGAGAAACATCTTCAAGAACTGCAGTTATTACTGGTGTTTCGCAGCATGGATGGCCTACTACATCAACCACCCCCTCTATACACCACCCTACTATGGGCAACAGCAAGTGAAGACAGCACTCATTATATTCTTATTCTGTCAGGTCGGCAACTTCTCCATCAACATCACTCTACGCAACCTCAAATGTCCAGGTTCGAAGGTCAAGAAGATCCCACATCCAACTAAGAATCCATTCACCTGGATCTTCGCGTTGGTGTCTTGTCCCAACTATACATACGAGCTGGGGTCGTGGATGGGCTTCACAGTGATGACCCAGTGCTTGCCGGTGGCTTTCTTCACCATCGTGGGCTTTGTCCTGATGACGGTGTGGGCCAGGGGAAAGCACCGAAACTACCGCAAGGAGTTCCGTGACTACCCCACCCTGCGCTCCCCTATACTGCCCTTCATCCTTTAGTCAGAGAGGGGCTGGTCCCACACATAACTTCACCCCTTTCAGCCCCACTGCAGTATACAGCTGGTGCTTCTGACTGGGTAGGTTGGAAGGAGTCTTTGGAATAGTTTAACTACACTGTGACTGGTTTTGGGGAGTTGAAACCCCCCTTTTGATGACTTAAATGCAGATGAGTCTTAATCTGATGTAATGTGTACAACCGGTATCTACTGTACATGTGTGGAGGCACAAATGAATGGAAAGAAATGCACTTGTTTTACTAAAGTGGTGACTTAACTGTCGACTAAACTGTT

Function

NR:

description
very-long-chain enoyl-CoA reductase-like

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function

KEGG:

id description
K10258 TER, TSC13, CER10; very-long-chain enoyl-CoA reductase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558516.2 True 1851 mRNA 0.48 11 50690182 50697090

Neighbor

gene id symbol gene type direction distance location
LOC110486716 LOC106601616 coding downstream 36898 50647434 ~ 50653284 (-)
LOC110486713 NA coding downstream 56492 50631005 ~ 50633690 (-)
LOC110486707 asb16 coding downstream 559880 50127555 ~ 50130302 (-)
LOC110486710 LOC106601657 coding downstream 562981 50123190 ~ 50127201 (-)
si:ch211-214j24.15 LOC106606868 coding downstream 622784 50059034 ~ 50067398 (-)
LOC118938085 NA coding upstream 22722 50719812 ~ 50730095 (-)
LOC110485208 LOC106606837 coding upstream 35007 50732097 ~ 50824433 (-)
LOC110486728 qtrt1 coding upstream 130305 50827395 ~ 50832708 (-)
LOC118938315 NA coding upstream 170238 50867328 ~ 50868744 (-)
LOC110486730 tmed1 coding upstream 179425 50876515 ~ 50883694 (-)
G1184995 NA non-coding downstream 8418 50678539 ~ 50681764 (-)
G1184965 NA non-coding downstream 81378 50608605 ~ 50608804 (-)
G1184964 NA non-coding downstream 81859 50607969 ~ 50608323 (-)
G1184963 NA non-coding downstream 82286 50607620 ~ 50607896 (-)
G1184958 NA non-coding downstream 87101 50602844 ~ 50603081 (-)
G1184979 NA non-coding upstream 6389 50703479 ~ 50703982 (-)
G1184978 NA non-coding upstream 10777 50707867 ~ 50708718 (-)
G1185012 NA non-coding upstream 11802 50708892 ~ 50709127 (-)
G1185048 NA non-coding upstream 88387 50785477 ~ 50786800 (-)
G1184986 NA other downstream 61643 50626647 ~ 50628539 (-)
LOC110486698 LOC106601594 other downstream 853850 49831067 ~ 49853671 (-)
G1183706 NA other downstream 1001726 49685338 ~ 49688456 (-)
LOC118938314 NA other downstream 1145906 49537199 ~ 49544276 (-)
LOC110486687 LOC106601611 other downstream 1186172 49486817 ~ 49504819 (-)
G1185046 NA other upstream 83175 50780265 ~ 50781858 (-)
G1186080 NA other upstream 624710 51321800 ~ 51323931 (-)
G1186075 NA other upstream 655219 51352309 ~ 51373954 (-)
G1186154 NA other upstream 792687 51489777 ~ 51490241 (-)

Expression


Co-expression Network