LOC110486722 (LOC106606841)


Basic Information

Item Value
gene id LOC110486722
gene name LOC106606841
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 50709612 ~ 50714443 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558521.2
gctgtgataTCTAATGAAAACACCCCTGCTGAACAACATACATACCATCAGATCATCCTTTCCTCTCATTTTCTTGTTAGCGTATCTCACAAGACTAGCGATTCAAATGCGATATAACTTTACTTTCACAACCTTTGGATCAAGAAGTAACCTAGTGTTTTGATGTTCCATTCCACGTCTGGCTTGAATCAATCATCTCGTACAGCGAGTTAGCTAAAACTCTAATGCACTCTGAATGTCTAGTtgccatacagttgaagttgtccCAACAGCAGCAGTAGCTAGCTACAACGACCACCACCAAGAGATAGCTGTGGTTCACTGGTGAATCATCAGGTGGAAGAAGATTTGAGAGAGAGTCCTATGCTGGACAGGATCTTTTGGCTACCTACCAAAGCAGCATCTGTTCActtccacagacagacagaaggataaAAATGCCTCTTGGATTGGGTAGAAGGAAGAAAGCATCTCCACTAGTGGAGAACGAGGAAGCCGAGCCGATCCGAGCGGGCCTTAATGTCCCAGGAATGGATGGCCTGGATGGAGGTGGTGTGGGGCTCGGGGAGGGTACTACCCAGGAGGGTCTGCCACCCCCACCCACCAGCCTGAGACCTCGTCTGATCTTCCACACCCAGCTAGCACACGGTAGCCCCACGGGACGCATCGAGGGCTTCAGCAACGTGCGAGAGCTCTACACCAAGATCGGAGAGGCCTTTGGGATCGCACCACCAGAGGTGATGTTCTGCACTCTGAACACTCACAAGGTGGACATGGACAAGTTACTGGGGGGTCAGATTGGGCTGGAGGACTTTATTTTCGCCCATATCAAAGGCCAGAGGAAGGAGGTGGAGGTGTTCAAGGGGGAGGACGCCCTGGGGTTGACCATCACTGATAATGGAGCTGGATACGCCTTCATCAAGAGAATAAGAGAGGGTAGCGTGGTCCATCAGATTCAGGTCATCAACGTGGGAGACATGATTGAGTCCATCAACGGCCACAGTCTCATTGGCTGTCGACACTACGAGGTGGCCAAGATGCTCAAGGAGCTGCCCAAGGGGAAGGACTTTGTTCTCAAGATGGTGGAGCCCTTGAAAGCCTTCGACATGATCAGCCAGAGGTCAGGAGGGGCCCGGGCTGGCTCAGGAACCCAGCTGGGGACAGGGAAGGGCACCCTGCGTTTACGCTCCAAAGGCCCAGCCACGGTGGAGGAgctgCCCTCTGCATTTGAGGAGAAGGCCATAGCGAAAGTGGATGACCTCCTGGAGAGTTACATGGGCATCAGAGACAGTGAGCTGGCTGCTACAATGGTGGAGCTGGGGAAGGACAAAAAGAACCCAGATGAGTTTGCCGAGGCGTTGGACGAGACTCTTGGTGACTTCGCCTTCCCGGATGAATTTGTTTTTGACGTCTGGGGTGCCATCGGGGACGCCAAGGTCGGCCGGCTGTAACCGGAGGGAGCAGGGGAACAACCTGTGTGTGGTTTTGAATGCTGAGGCACCAACCTGCAACAAACAGAACTACTAGGAAACACCACACTACCATCATGTGATTTACTTATTGTTTTCTGTGTACTTATTATTTTTTACGTGGAGTTTACTACTCTTGTTGGGATACTTTTGGGGGAGACTCTTTGGGAGGATAGAGACAGTGTATGGGAGAGGATAGAGGACTCTGATCACTAGCTCTGATCACTCGATCAGGCTGAAAATACTCTCATCAGACTCAGACTATTGAATGCAATACGTGGAGGTTATTGTGTTCAAACTGCAAGTGCTTTTCAATTTTCTTCCAGGTCTTGTGGTTGTGGACACACCTCCTGACCTTGAACACGTCAGATGTTAACGCCCAGGTCTTTGTTCCACTAGTCCTCTGAGGAACAATCCCGAGAACAACAAGTGGGAGAAGGGACCACGGCTTACATACACCTACCTTTTTGAAGTTTGAGTTCAAACAAActgtgacccccccaccccccccacactTTGCACTGTCTTGCACTGCCCTGTAGAAAATATAAGAAAAGTGCATTGTACTTCACTGGAGCAGTCACTCACTACATTGCACTGGTGCATATAACTGGACTACAGTATTTGCGTTCTGTGCGGTGTTGTTCAGAGAGAGGCGTATTGAGAGGCTCATGCCCAGAATGTCCTGGTCAAATCGCATGGTcagaaaaaaacatgttattAGCCCGTGCTATTATTGTTTGTCTCCTCGTTGTGAGTTCTTTTGGTTTTATGTGCTGTTGAGTGTCACTATTGAAGGAGTGTTTTGGCTGCTGAAGGTTCACAATGCGTAGACTGTCACTACAAAATTAGCTGCAGCTTTTTCTATGGTTCAAACTACAATCACTCAGTTTTTCTGAAGTGAATAAGGTATAGAGAAACAAGCTGCACTTGTAGCACATCTCAGTCTGTTAACAAAGATAGTCTGGTTAATACTTAAATGGTCCCCTTTGCCAGGGAAACTCCAGTATTAAGAAAAGCAGtgttatattacagtattacaagAATACTGAAGAATTTGAAATACATGTTAGAAAAAAAAAGTTTCAAAAAAACTATTGGCTTATTGGTAGACTGTGAGCCTTTCATTTTTCTATTTTTTAAGAAATTATTTTTTAAAGGAGTGGTGTTTTAAATGAAAAAGCGTTGTGTAACTGATGAGGAATTTCCTTTGTTTTAATTGAGTTGGTGGTAAAAATGAAAACTGATATCCAATAGACTGCATTTTTTAGGGACCAGACAGTCTCAACATGAAGGAGCCAAATAGTTATGCACATAAGTCATGGAGTGGTCAAGTAATGAAAGGAAAATGCACCATTATGCAATGAAATGAAGGACCAAGTCCAACACTGTTACTTTAGGAAAGAACCTGGACACTACCATAGGAACAGAATGATGTCATTATCAAACCAAACTACTTTCTGCAAAGTCATCTGGCTTTTAGTGACTTCTTTATAGATGAATAAAAAAACATGCAATATGGGTCAAAGTTCCAAGATATAGAAAAGAATTACTCAACATAGAAAATATTTCTTTTCGTAACTTTTTGGGGTTTTATCTTTTCCATAGCCTATCTCGAACAATATTTTTGTAGTACATTGTTTGGTTGTTTTTCTGTCTTTCAATGCTGTTGAAGTATATCTAGATGGTTACTGTCATAAAATACTGATAATAGGCACTGGAATACTGAGGACATTGTTTTGGTATGGCTTTCTATTACAATGTCTGATTTATAATGGCGATAATAATGACGAAGATGATGAAATAAGATGTTTTCCATGTCTTTCCCTCAGTTGAATACACAAATGTTGCCTTGGACTCT

Function

NR:

description
PDZ domain-containing protein GIPC1-like

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0048844 artery morphogenesis biological_process
GO:0000165 MAPK cascade biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004707 MAP kinase activity molecular_function

KEGG:

id description
K20056 GIPC, SEMCAP; PDZ domain-containing protein GIPC

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558521.2 True 3330 mRNA 0.45 7 50709612 50714443

Neighbor

gene id symbol gene type direction distance location
LOC110486721 dnjb1 coding upstream 5314 50699063 ~ 50704298 (+)
LOC110486717 LOC108442215 coding upstream 19610 50682397 ~ 50690002 (+)
LOC110486718 LOC106606839 coding upstream 27822 50659213 ~ 50681790 (+)
LOC110486720 LOC106606512 coding upstream 50716 50655021 ~ 50658896 (+)
LOC110486715 LOC106601614 coding upstream 62209 50644660 ~ 50647403 (+)
LOC110486723 LOC106601660 coding downstream 934 50715377 ~ 50719819 (+)
dnm2a NA coding downstream 118361 50832804 ~ 50876302 (+)
LOC110486729 light coding downstream 171286 50885729 ~ 50894479 (+)
LOC110485209 LOC105013079 coding downstream 225131 50939574 ~ 50965217 (+)
LOC110486733 LOC106606838 coding downstream 277051 50991494 ~ 50992842 (+)
G1184326 NA non-coding upstream 893 50707873 ~ 50708719 (+)
G1184330 NA non-coding upstream 12706 50695575 ~ 50696906 (+)
G1184329 NA non-coding upstream 16212 50693154 ~ 50693400 (+)
G1184328 NA non-coding upstream 21617 50687723 ~ 50687995 (+)
G1184308 NA non-coding upstream 95507 50613560 ~ 50614105 (+)
G1184337 NA non-coding downstream 6722 50721165 ~ 50721497 (+)
G1184338 NA non-coding downstream 10167 50724610 ~ 50724837 (+)
G1184352 LOC106594965 non-coding downstream 31940 50746383 ~ 50746651 (+)
G1184359 NA non-coding downstream 43065 50757508 ~ 50757901 (+)
G1184361 NA non-coding downstream 46064 50760507 ~ 50768578 (+)
G1183875 NA other upstream 826177 49882821 ~ 49883435 (+)
G1183819 NA other upstream 874598 49832221 ~ 49835014 (+)
ndua4 ndua4 other upstream 1125050 49580324 ~ 49584562 (+)
G1182742 NA other upstream 1283389 49419570 ~ 49426223 (+)
LOC110486677 LOC106601591 other upstream 1426109 49281106 ~ 49284116 (+)
G1184435 LOC106606845 other downstream 271370 50985813 ~ 50986566 (+)
LOC110487554 LOC106601638 other downstream 669729 51384172 ~ 51394113 (+)
G1185436 NA other downstream 731464 51445907 ~ 51446557 (+)
G1185521 NA other downstream 913239 51627682 ~ 51628676 (+)
G1185527 NA other downstream 937170 51651613 ~ 51653770 (+)

Expression


Co-expression Network