LOC110486730 (tmed1)


Basic Information

Item Value
gene id LOC110486730
gene name tmed1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 50876515 ~ 50883694 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036941431.1
AACGACTTAATTAGTCCTTTacagtattttttacttaagtacttcacaccactgctATACATTGGTATTGCACACCCTTCCAGTCAATCATACGCGCTACTTTGTAGAAGTTATTGTAAAAGATAGGGCTACAGGGTGAGCTTTTGTTCTTCCAGTGGTCTAGTCTAACATCGATATAATAGGTTATCTTGTTGGATGAGATGCCATAAAATCGACTTACTTTCAGTTGCGCGCACAGTGGTCAGAACTGATCTGAAGCTAGTTGTTCGGTGAAGTAGGCGACTTGATTTCTGCTATGACTAACTTTGATCACAAGCAATAAATAGCCTACAGCTCGTGGTCGCTGACAGTCTATGGAATATGTACGTATACAATGCGGTATGAGTGAAGCGAAGTAGGCTACTAGACTACAAGAACAAGCATTCATGGCTGCCGATGAGTCAACAGTGATTGTAACTTTTACTGAAGTCCAAAGTCGCTTCTAGGCTACAAATGGGTTCCATGTTTGATCTGAGCGTTGCTGTAAGACTCTATTTGCTGTCTTGTTTCGTTGTATCTGTGGACTTCACTTTAGGCTTGGGACAAAGCCAAGATACTGAATTCACGTTTCAACTCCCTGCAGGTAGAACAGAATGTTTCTACCAAACAGCTACGAAGAACGGAAGCCTGGAAGTAGAATACCAGGTGATTGCAGGTGCAGGCCTGGATGTGGGCTTCACCCTGATCTCCCCCAGCGGATACAAGCTGGCCTCTGAGTTCAGGACATCTGACGGCATCCACACGGTGGAGCCTACAGAGGATGGAGACTACCGGCTGTGTTTTGACAACAGCTTCAGTAAGCTTTCTGAGAAGATGGTGTTCTTCGAGGTGATTGTAGAGGGCCAGCCTGGGGACACCTGGGGCGATGAAGAGTGGGCTGACATGGCCGAGCCAGAGAGTATGGTGGAGTACAAATTGGAAGACATCAGGGAGACCATGGACTCAGTGCACAGGCACCTGGAGCGGAGCCGGCAGCTTCAGACCATGCTGAGGACCTTCGAGGCCCGGGACCGCTATCTACTGGAGGACAATCTGTGGAGGGTCTCGTTCTGGTCCTCCATGAGCCTCCTGGTCATCCTGACCGTGGCCGTCACACAGGTCTACACCCTCCGACGCCTCTTCGACGACAAGAGGGTCTGCAAACCCTAGTGTCCAGTAGTATCTTCCACCACCCCCACACCCTTCCCAGTGGTATCTTCCACCACCCCCACACCCTTCCCAGTGGTATGTTCCACCAACCCCACATCATGCCCAGTGGTATCTTCCACCACCCCCACACCCTTCCCAGTGGTATCTTCCTCCACCCCCACACTCTTCCCAGTGGTATCTTCCACCACCCCAACGCTCTTCCCAGTGTTATCTTCCACCACCCCACACCCTTCCCAGTGGTATGTTCCACCACCCCCACATCATGCCCAGTGATATCTTCCACCACCCCCACACCCTTCCCAGTGGTATCTTCCACCACCCCCACACCCTTCCCAGTGGTATCTTCCACCACCCCCACACCCTTCCCAGTGGTATCTTCCTCCACCCCCACACTCTTCCCAGTGGTATCTTCCACTACCCCCACGCTCTTCCCAGACTAACAGGACCCTACTGTAAAGTAATGGTTTCAGAGATTGAAGAAGAGAGACTATTGACAACAGTGATGTTTGGTAAATGAGGGACTGTTAGTAAGGATTTAGTGATGTTTGTGTTTGATGAGTTTGATTCAGCTTTTGAGTGGCAGAAAAGTGCATGTTTGTATGTGAGTCATAAACACTGTATAATGATGTTTTGACAATTTAGTGTCAATCTATCAAACAAGAAACCAAAGCAATAGCAGATCATGTGGTAGTATGTTTTTAACATGGGATCTTAAGAGTGACATTACAAATATAATTGATTTAATGACATGGTTATAACACAACTACAGaaaattaaacacacacacaaaaaatattcTACTCTGAAATAAATTAATTCTGGAGAAAGAGTAGCCTTGCAAAGCCACTGGTCCCGCAAGCTTACATTAAAAGCTGCAGTGGTTATCAGTCTGTTAATTATGAGGCAAGAGAAATAAGTCTTACATGCATCAATGGCTGTCCTCATGGGATGGTTTTATTGAATTACagatattacatttttattgaaaTGTATAGTGTTTGACAGAGATCTGGTGAGACGAAGCCAAAGAGTTGAGACATTCAAAAAATTATCCCTGCCAGGAGAATGTTGCAAAGTCAACCACAAGCATAGTTGTTATATACACCTCCAACACCACAAAACAAGATCCAATCATTCATTTGAAAAAATGATTGTATTTATAAAACCATAAAATCTCAATGATCCATTCCTTTCAATTATAGGTACAATAGTGCAAATTTGAGTGTCAAAAGTGTGCAGCGAAAGAAAATAAGGCAACCTTATTGGCTACCACAAAACAGCACTGGATTAAAGGCATATCGCAAAGTTCTGCAGTTGACATCAGTTGGATCTATTATTGACACTGTACTACATTATAATCACATTACCGGTATATGCCCTTCTTCATACAACTACCCttactacagtataaataaacTGTATAATGATAACATACAGCATATGCCATATAGAAGAGGCCTTTATTCAAAGTGATTTACAGTCATTCGTGCATACATTTCACGTATGAGTGGCCCCAGCAGGATTCGAACCTACGACCCTTGGTGTTGCAAGCACAATGCTCTACCGTCTGACCCTTGTGCAAGGCATCCACTGGAACATGCATGGTTTGAAGCTCTCTTCTGAACATGACATGACCCTCGCTGTTAAAAGCTTTGTATGCTTCTGTGCTCACTCAGCAGTGGAGGACCCAGCACTACCTGATTAATTGAGCTGTTCCTAACATCCTTCACCTCATCCCTTCAAATAGTCACTTTACCGTTTGGTTTTTGGGGCCCTCCCAATACACTACCATATAATATTAAGGGCTGTCATCCTCCCATGTGGTGTTCCCCAACTGACACGTCAAATGATTAACTGTAGCATCGAACACAATGCAGTATGAGTGAGATCTCAAATAATCTACAGTTCCACCTACAACACAATTTACAATCATCTAAATAAACCAAACTTCTACACTTCAATCATTTTTATAGGAGTGTTATACAAACGTGTTCAATAGTCATTCAGACACTGATCTGTTGAGAAATGCCCATATATTAAAACTGCACTGTACATAAAACCAAGAGGAGAGGTTATGCCCCATGAGATAGCTAACACAAACAATCACTGGATTTCATTACGAATTTGGCACATGAGCAATCAAAAATTTTTATCAGTACAAAAATAATTTCATTTTCTCAATGTTTGTTTAGTATGGAAATAGGGAACAGAAGTTGAACCCGTACTGAGAGTGGTGTCAGAATTCAGCCAGGCTACAGCTCGCTAAAACCACTGGaggggatggagatttcagaataCATCCCCCACACTTATAGAACAGTCTGGGTAGGTGCTAGctattaaaggcccaatgcagctgtttttatctcaacatcaaataatttctgggtaacaattaagtaccttactgtgattgttttcagttgatttttttttaaataaaaca

Function

symbol description
tmed1 Predicted to enable signaling receptor binding activity. Predicted to be involved in Golgi organization; endoplasmic reticulum to Golgi vesicle-mediated transport; and intracellular protein transport. Located in Golgi apparatus; endoplasmic reticulum; and endoplasmic reticulum-Golgi intermediate compartment.

NR:

description
transmembrane emp24 domain-containing protein 1-like

GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K20348 TMED1; p24 family protein gamma-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036941431.1 True 3634 mRNA 0.43 4 50876515 50883694

Neighbor

gene id symbol gene type direction distance location
LOC118938315 NA coding downstream 7771 50867328 ~ 50868744 (-)
LOC110486728 qtrt1 coding downstream 43807 50827395 ~ 50832708 (-)
LOC110485208 LOC106606837 coding downstream 52082 50732097 ~ 50824433 (-)
LOC118938085 NA coding downstream 146420 50719812 ~ 50730095 (-)
LOC110486719 LOC105013088 coding downstream 179425 50690182 ~ 50697090 (-)
LOC110485210 adgrl1 coding upstream 126925 51010619 ~ 51230197 (-)
LOC110486734 LOC106606824 coding upstream 441212 51324906 ~ 51329316 (-)
LOC110486738 LOC106606773 coding upstream 521563 51405257 ~ 51412417 (-)
LOC110486740 LOC106606777 coding upstream 538896 51422590 ~ 51424573 (-)
LOC110486741 erf3b coding upstream 543991 51427685 ~ 51441706 (-)
G1185048 NA non-coding downstream 89715 50785477 ~ 50786800 (-)
G1185012 NA non-coding downstream 167388 50708892 ~ 50709127 (-)
G1184978 NA non-coding downstream 167797 50707867 ~ 50708718 (-)
G1184979 NA non-coding downstream 172533 50703479 ~ 50703982 (-)
G1185123 NA non-coding upstream 52664 50936358 ~ 50936584 (-)
G1185154 NA non-coding upstream 106679 50990373 ~ 50991627 (-)
G1185128 NA non-coding upstream 119797 51003491 ~ 51007735 (-)
G1185194 NA non-coding upstream 180429 51064123 ~ 51082403 (-)
G1185256 NA non-coding upstream 289354 51173048 ~ 51173497 (-)
G1185046 NA other downstream 94657 50780265 ~ 50781858 (-)
G1184986 NA other downstream 247976 50626647 ~ 50628539 (-)
LOC110486698 LOC106601594 other downstream 1040183 49831067 ~ 49853671 (-)
G1183706 NA other downstream 1188059 49685338 ~ 49688456 (-)
G1186080 NA other upstream 438106 51321800 ~ 51323931 (-)
G1186075 NA other upstream 468615 51352309 ~ 51373954 (-)
G1186154 NA other upstream 606083 51489777 ~ 51490241 (-)
G1186381 NA other upstream 1041269 51924963 ~ 52030660 (-)
G1186216 NA other upstream 1126996 52010690 ~ 52011211 (-)

Expression


Co-expression Network