LOC110486729 (light)


Basic Information

Item Value
gene id LOC110486729
gene name light
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 50885729 ~ 50894479 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021558543.2
CggattttggccaggtgggatgctaccgtcccacGTACCCCAGAgagatatttttttaaagtaaacaTTGGCTTTTAATTATATCATCCTTTTTTTACATGGTGGGGtcacaagttttttttttatcaaaaaagTTGGGGAACCCCTGCCCTAACCTAATCTTAATCCtaattttaaccctaaccttaacccccaaacctaaccttaatcctaaccctaaacctaaacctagctcctaaccctaactgtatcTCCTCACCTAATTCTAACATCAACCCCAACTAAACCccttagaaatagcatttgaccttgtggggactaacaaaatgaccCCAGTTGggcaaatgtttgtttgtttactattctattctggtccccacaagtatagttaaacgcgtacacacacacacacacacacacacacacacacagagatgcacacaTCCAGTAAGCACTGACTGACGTAGGATGTCCATGGATGTTGAAAACTTGGTGAAATTTGGTCAGTCCATCTTGGTATTGATTTCAACATCAACAGAAGTTAATTTCCAGACAGATCTTGATTTGGCcctggttcagatttggtccgctCTGGACCACccttgatttggcccaaacatggACATCTATGATTTCTTAAGATTTGGTCAGCTCTGGACGGGCCTATGTTGGGTTCAGATTTCGTCCTGTCTGGACTAACCACATTTTTATCAATGTCCgtaaaatacgtattttcaaTGTCTGTAAAATACGTTTTCAACTTTCACTTAGAGCTGAAAATGAACATGACTTCAACCTCCGTAATTATGTCTTTTCAACTTCTTTCCAACATCATTTTGCTCACTGGGCACTCATTTCATACAGTTCTTTTTAGCCAGAATTGTCCACTCAGTAACAATTTCCACAGTTTTCCAAGGAGTCCTGGATTCCATAGAATCAATAAAAACATACACATCACATAAAAGTTGTCTAgataaaaacacacatacacataagcATACACAGCATACCCAGTAGTAAACATACACAAATATGTACACACATACAGCATATGCAATGTACATACCATTTTTAAGGACAACTTGTTGTATGTTTTAGTTATATGACATACAGAATGTTTTTTTAGAAGTGTGCATTATGGTCAGAGAGGTGGTGGGTGGTGCCAAGGGAAAGCTTTACATTGTTATTGCAATATGCTCTTGTTAGTTTTGGATGAGGTTTACTCTTTGCcactgatctaagatcagattTCTACTGCCCCAGCCTGATCGCTAAGGGGGTTTGGAAAGGGTGTTGATCCTACATCTGAATATGATTTTGAATATAGGTTTAGTTTTAGATTCTTTTCACTAGTGGGTAATTGAAAAGTTAAAGAATTGAAAATGACTTTTAGAACACACCTTAGAGAGCATGCTGAAGCTATATATGGACACCCCTGCTGTGTACCTTTCATCCACTTCCTGACATAGTAAACCCCAATCCATCTCCAAGTGCCAAGCAGAGACGCATTTTTCCAGTCTTTGGTATGGCTTGACCGGGGATCGAACTCCCAGCCTTCCAATGTCAGGGAGGGCAAAGCATGATCTTGACAAAGCATGATCTTGACACAGCATGATCTTGACACAGCATGATCTTAACACAGCATGTGGTAAAAAACAATACCATGAAAAGTCTTAACAACACAAGAATAACAATAGAATGAAccatatgttgttgttttttacaagaAGCTGCACTGTCAAGGATCATGAATATATTGGTCTTGTCGTGATTTTATTGTTTTTGCTGGTAGAGACAGCAGACCACTCTCTACCAGATCAGATACTCATCATGAGAGTggctgagagtgagtgagaggaagTGTGAACAGAGCAACAAATGATTGCGAAACTCAATGTATGCTGTATTAGGCTAGAGTGGGAGGGTGTATGTAGTGTAGTGGGGAGGTGATCATACTCAGTGCATGGACACTCTATAAGATGCTCATTTGCATTTGCCTCACTCTATCTGACTGATTGAAACTTTACACAccgttctctctctgtcaagaTTTATTTTGGTTAAGACAAGTTTTGCTTTCTGTGACTGCTCTTTGGGGAGATGGTCGTTTCTGTGAAGGATTTCCACATTTCTCATATCTGGAGGTTTTTTTCCACTACTGTGTGTCTTGTCTTTTCTGCTGACAAGACGACCTGAGGAGTCATACTGTACAACCCACACTAGTGTTTGGTCTTGCTCTGGGAAAataatctctctgtgtctctcgttGTGTTCCGGGACACCTGGTGCGTGGACCTCGCTCAGGTACTACTTAACTACCTCTTGGAGGATCCTTTTTCAGTTCCTTATATTCTCTGATCGGAGAGATCATGGCTGAGGGTGGTGTCCCGTACCCCTCCGTGTTCATGGTGGATAGCCATGCAGCATTCCCATCGCTGCCCCCCAAACCGAGACCTCCTGGTCGGGGTGGTGTGGCCCAAAGCCTGCTGTTCTTGCTGGTTGGTCTGGCTTTGTGTGGCTTGGCCATAGAGGCCTGCTTCATCTACCACCTCTACTCCAAACAGGGATCTGTGGAGTCAGGGTCAGCTGGTATGAGTATCCAAGACCAAGAGGACATTCCGAAGGAGGTTCCCCCAACTTCAAGACCAAACCCTATTGTGTTGCCTTCAAAACCTGTTGCACATCTGACAGCTGGACCTCAAGCACCCCATGGAGATGGAGTCATGGTATGGAACATGCAGGCAGAACCAATCCTCCATGAAATGGAGTACAAAGATGGGAAGCTTGTCATCCAGAAGGAAGGCTACTACTACGTCTACTCTAAGATCTTCTTCAGTGAGGTCGATGTTGCGTTCACACACTCGGTCTGCAGAACTACTCCACGGTACCTTGGGAAGGACATTGAACTCCTTGAGTCCAGGAGATATTACCCCAAGTTTGGTAAAATTATGTCCACATCAAATAGCTACCTGGGAGGGGTGTTCCACCTCTTTGAAGATGACTCCATCTTTGTCAAAGTGAAAAATGTCACTCAAGTTCGGATACAACATTCCACAGAGAACGTGTTTGGTATCTATATGATATAATACGGGTTGATGATGAACATACTTTTTTTAGATAGCTGGCTGATTATCATTGGTTTAAGGCATAATAATACTGTAGGCCAATTTACATGTAATATTGTTACGCAGGGCCTTCCCCCTCATTTTCTTTAAACAAATCCTTGCATCAAGATGCAATTCGATGCGTGGAAAATGTACTGTTGAAGAAAAAGCCCCTTTATAATAAAGCCATAATAATGTTTGCCATACACTAGGCTACAGTTGAGCAGAGGCGTTTTTAGGATTTCCACACATGGATTTTTTTTAGCAGGGTCGTAAAAGAATCCGCCTTTGAAAAAAGGCATTTCATGCAGTTCTACGTCATTTACATGAAAGACATTGGATGTATCTTTTTATTACCGCACAACTGACTGAAATGGCTGGCTactctgacactgacaaactgagatcaatCTGGTCTTGAATTCAAACAAACAATAGCCCAGGCCAATGAAGCGACACACAGATTGTACAATATTAGgaggcaatatatatatatatactgtatatcatagtTTACAGTAGGTTACTAAATAAAATGTAGAGtggagggcctcccgggtggcgcagtggtctaaggcactgtttcgcagtgctagctgtgctagctctgtcgcagccggccgcaaccgggaggcacatggggcagcgcacaattggcccagcgtcgtctgggttagggagggtttggccggtagggatatccttgtctcatcgcgcactagcgacacCTGTGACAGGTCGGGtgcagtgcacactgaccaggtcgctaggtgtacagtgtttcctccgatacattggtgtggctggcttctgggttggatgcgcgctgtgtcaagaagcaatgcggcttggttgggttgtgttttggaggatgcatggctctcgaccttcgcctctcccgagtccgtacgggagttgcagcaatgagacaagacagtaactagtaccaattggataccacaaaattggggtaaaaaaaatacatgttgagTGGCACACTGATTCACCTAATGATGAAGATGAAGTCATAGGCTTCTCACGGTGAGGGCTGATGCACTAGTTGTGGCAATAGCCTATCTCAAGATGAGCTACTTTGAAAAACAGTGCTGCTGTTAGCTAAAAATTGGGAGTTGTTATTAAGAAAAACAATTTATTGGTTCTAAAGACAGATTTGGTCAGGAGGTAACACATTATGTTGATAGTTTGCCCTCAAGAACAAGAACAAAATAACTGCATGAACATTACCTCTGTATGCTAGTGTTCAATGCATATTTGTATTCTTTATTCTCTTATATATTATTCTCTTTATTCTGTTATATTGACCTGATTAAAAATAATATATCCATAATAGTATAAGGAAATACATAATATAGATATAGGGAAAAATATTTAGATATTTAGATCATTCGAAAAATTGACAAGTAGATATATTCTACGTTTTTGAAACAATTTAAGAATACCTGATATTCAGGTAAATTGCATGTAAACCACTGCATAATGATAAGGTCAAATGTTGGACTATCTTTTTCCCTCTTTGTATACCCTCCATAAAATGACCAAGTAATTAACTCATTTCAGTACCCTCAACATGTTGTATTTCACCTTTTggtgttttatatttatttaacattttataCAAATGTAAAGTAGTCATTGTCCTCCATATTCTGATAAACACGACTTATCAACTTCCATATATAgtgagaaataaaataaaatatgtttttttcttcttggACGCTAACGCTATGCAAGCAGTAGGCTATAGCTGTAACACATACTGGGTATTTTGTATATTCTATCCTGcaaatattaaaataaataaatgttgaaTTTTTTATCTT

Function

symbol description
light tumor necrosis factor ligand superfamily member 14

NR:

description
tumor necrosis factor ligand superfamily member 14-like

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0005615 extracellular space cellular_component
GO:0016020 membrane cellular_component
GO:0005125 cytokine activity molecular_function
GO:0005164 tumor necrosis factor receptor binding molecular_function

KEGG:

id description
K05477 TNFSF14, LIGHT, CD258; tumor necrosis factor ligand superfamily member 14

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021558543.2 True 4948 mRNA 0.41 4 50885729 50894479

Neighbor

gene id symbol gene type direction distance location
dnm2a NA coding upstream 9427 50832804 ~ 50876302 (+)
LOC110486723 LOC106601660 coding upstream 165910 50715377 ~ 50719819 (+)
LOC110486722 LOC106606841 coding upstream 171286 50709612 ~ 50714443 (+)
LOC110486721 dnjb1 coding upstream 181431 50699063 ~ 50704298 (+)
LOC110486717 LOC108442215 coding upstream 195727 50682397 ~ 50690002 (+)
LOC110485209 LOC105013079 coding downstream 45095 50939574 ~ 50965217 (+)
LOC110486733 LOC106606838 coding downstream 97015 50991494 ~ 50992842 (+)
LOC110486735 LOC100380774 coding downstream 449899 51344378 ~ 51373991 (+)
LOC110487554 LOC106601638 coding downstream 497381 51384172 ~ 51394113 (+)
LOC110486737 LOC106606772 coding downstream 499957 51394436 ~ 51404580 (+)
G1184367 NA non-coding upstream 98617 50778836 ~ 50787112 (+)
G1184369 NA non-coding upstream 98639 50785525 ~ 50787090 (+)
G1184368 NA non-coding upstream 99321 50785343 ~ 50786408 (+)
G1184362 NA non-coding upstream 104932 50762509 ~ 50780797 (+)
G1184364 NA non-coding upstream 110744 50769244 ~ 50774985 (+)
G1184427 NA non-coding downstream 31312 50925791 ~ 50926011 (+)
G1184441 NA non-coding downstream 50442 50944921 ~ 50946135 (+)
G1184443 NA non-coding downstream 109038 51003517 ~ 51007979 (+)
G1184575 NA non-coding downstream 315930 51210409 ~ 51210919 (+)
G1185283 NA non-coding downstream 335989 51230468 ~ 51230739 (+)
G1183875 NA other upstream 1002294 49882821 ~ 49883435 (+)
G1183819 NA other upstream 1050715 49832221 ~ 49835014 (+)
ndua4 ndua4 other upstream 1301167 49580324 ~ 49584562 (+)
G1182742 NA other upstream 1459506 49419570 ~ 49426223 (+)
LOC110486677 LOC106601591 other upstream 1602226 49281106 ~ 49284116 (+)
G1184435 LOC106606845 other downstream 91334 50985813 ~ 50986566 (+)
G1185436 NA other downstream 551428 51445907 ~ 51446557 (+)
G1185521 NA other downstream 733203 51627682 ~ 51628676 (+)
G1185527 NA other downstream 757134 51651613 ~ 51653770 (+)

Expression


Co-expression Network